Rroxscaffold_2G00109470

Lariat debranching

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
33659573 .. 33660787
1215 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00109470.1

Sequence Viewer

Length: 1215 bp
ATGAAAATTGCAGTAGAAGGTTGCATGCATGGTGACCTCGACAATGTCTACAGGACCCTCCAACACATAGAAAGAATCCACGACACTAAAATCGACCTCCTCCTCTGCTGCGGCGACTTTCAGGCCGTCAGGAATGAACACGATTTGAAGAGCTTAAAGGCGTCTCCAAAACACCGGAAGATGAACTCCTTTTGGAAGTACTATTCCGGCGAGGCCATCGCTCCCTATCCCACCATATTCATCGGCGGCAACCACGAAGCTTCTAACTATCTCTGGGAACTCTACTACGGAGGTTGGGCCGCACCTAACATATACTTCTTAGGGTTTGCTGGGGTCGTCAAGTTCGGACACCTTCGCATTGGTGGCCTCTCTGGTATTTATAAATCGCGAGATCACTATAGTTTAGGACACTATGAGAGGCCTCCTTATAATGAACATACCATCAAGTCTGTATATCATGTTCGTGAGTATGACGTACACAAACTCATGCAGGTCGAGGAACCGATCGATATTTTTCTTTCACATGATTGGCCTGTAAACATCACTGATCATGGAGACTTGAAGCAACTCCTTCAAAAGAAACCATTTTTTACGAAGGAGGTTCGGGAGAAAAAGCTGGGAAGTGATGCTGCTGCTTACTTGCTAGAGAAACTGAAACCACCCTATTGGTTTTCAGCTCATCTGCACTGCAAATTTGCAGCTCGTGTTCAACACGGTGGGAAAGGTGGTCCGGTGACGAATTTTCTTGCTCTTGATAAGTGTGGTGAACATAGGGACTTTCTGCAGGTTATTGATGTTGAATCAGGGCCAGGGCCTTATGAGATTCAATATGATGAGGAATGGCTCGAAATAACTAGACGGTTTAACCCTGCTTTCCCTCTCACCATCGCACGTGCGAATTTCAGTAATGTGTATCTTGACAAGGAAGCTTGTCGAAACTGGGTGAGGAGTAAGCTACAAGCAAGAGGAGCCAGGCCTTTTGAATTCTGCCAGACAGCTCCATCTCATAATCCCTCTAAGAAATCTGATGACTCAAGTGGTGCATTTCCTGTATGTCCTAGGAATCCTCAAACAGAATCTTTGTTGCAGTTTCTGGAACTTCCTTACCTTCTTGATAACATGTCAGAATCTTCAGATGCACCAAGAAATTCTTTTCCATCAAGCAATAGTTATAATAACCCCGAAGAGATTTTCATTGATGATGTGGATAAGTGA

Protein Analysis

404

Amino Acids

46.4

Weight (kDa)

6.44

Isoelectric Point (pI)

44.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Metallophos PF00149 1 - 230 1.4e-14 Calcineurin-like phosphoesterase
DBR1 PF05011 245 - 368 1e-25 Lariat debranching enzyme, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 381, 429, 1173
Acc36I ACCTGC 2 cut(s) 481, 775
AccI GTMKAC 1 cut(s) 48
AccII CGCG 1 cut(s) 388
AciI CCGC 3 cut(s) 111, 246, 300
AcsI RAATTY 5 cut(s) 692, 739, 898, 983, 1147
AcuI CTGAAG 1 cut(s) 1116
AcvI CACGTG 1 cut(s) 893
AcyI GRCGYC 1 cut(s) 161
AfaI GTAC 2 cut(s) 200, 477
AflIII ACRYGT 1 cut(s) 1119
AgsI TTSAA 7 cut(s) 148, 562, 575, 710, 800, 827, 983
AjnI CCWGG 2 cut(s) 808, 971
AluBI AGCT 8 cut(s) 153, 260, 616, 677, 701, 929, 955, 998
AluI AGCT 8 cut(s) 153, 260, 616, 677, 701, 929, 955, 998
Alw26I GTCTC 2 cut(s) 168, 549
AlwNI CAGNNNCTG 1 cut(s) 1093
AoxI GGCC 9 cut(s) 123, 213, 297, 364, 419, 530, 806, 812, 974
ApeKI GCWGC 4 cut(s) 108, 629, 632, 698
ApoI RAATTY 5 cut(s) 692, 739, 898, 983, 1147
AspA2I CCTAGG 1 cut(s) 1058
AspS9I GGNCC 5 cut(s) 54, 297, 728, 806, 812
AsuHPI GGTGA 5 cut(s) 44, 745, 776, 874, 955
AvaII GGWCC 2 cut(s) 54, 728
AvrII CCTAGG 1 cut(s) 1058
BauI CACGAG 1 cut(s) 702
BbrPI CACGTG 1 cut(s) 893
BbvI GCAGC 4 cut(s) 95, 616, 619, 710
BccI CCATC 5 cut(s) 224, 449, 893, 1009, 1165
BceAI ACGGC 1 cut(s) 110
BciT130I CCWGG 2 cut(s) 810, 973
BclI TGATCA 1 cut(s) 547
BcoDI GTCTC 2 cut(s) 168, 549
BfaI CTAG 3 cut(s) 644, 855, 1059
BfmI CTRYAG 3 cut(s) 49, 397, 782
BfuAI ACCTGC 2 cut(s) 481, 775
BisI GCNGC 7 cut(s) 109, 112, 247, 300, 630, 633, 699
BlnI CCTAGG 1 cut(s) 1058
BlsI GCNGC 7 cut(s) 110, 113, 248, 301, 631, 634, 700
BmcAI AGTACT 1 cut(s) 200
Bme1390I CCNGG 2 cut(s) 810, 973
Bme18I GGWCC 2 cut(s) 54, 728
BmgT120I GGNCC 5 cut(s) 54, 297, 728, 806, 812
BmiI GGNNCC 3 cut(s) 56, 501, 970
BmrFI CCNGG 2 cut(s) 810, 973
BmrI ACTGGG 1 cut(s) 949
BmsI GCATC 2 cut(s) 616, 1126
BmuI ACTGGG 1 cut(s) 949
BpuEI CTTGAG 1 cut(s) 1018
Bsa29I ATCGAT 1 cut(s) 507
BsaAI YACGTR 1 cut(s) 893
BsaHI GRCGYC 1 cut(s) 161
BsaJI CCNNGG 2 cut(s) 809, 1058
BsaWI WCCGGW 2 cut(s) 174, 730
Bse1I ACTGG 1 cut(s) 944
BseBI CCWGG 2 cut(s) 810, 973
BseCI ATCGAT 1 cut(s) 507
BseDI CCNNGG 2 cut(s) 809, 1058
BseNI ACTGG 1 cut(s) 944
BseRI GAGGAG 4 cut(s) 89, 92, 961, 981
BseXI GCAGC 4 cut(s) 95, 616, 619, 710
BseYI CCCAGC 2 cut(s) 329, 616
BsgI GTGCAG 1 cut(s) 668
Bsh1236I CGCG 1 cut(s) 388
Bsh1285I CGRYCG 1 cut(s) 507
BshFI GGCC 9 cut(s) 125, 215, 299, 366, 421, 532, 808, 814, 976
BshVI ATCGAT 1 cut(s) 507
BsiEI CGRYCG 1 cut(s) 507
BsiSI CCGG 3 cut(s) 175, 207, 731
BslFI GGGAC 1 cut(s) 788
BsmAI GTCTC 2 cut(s) 168, 549
BsmBI CGTCTC 1 cut(s) 168
BsmFI GGGAC 1 cut(s) 788
BsnI GGCC 9 cut(s) 125, 215, 299, 366, 421, 532, 808, 814, 976
Bsp143I GATC 3 cut(s) 391, 504, 547
Bsp68I TCGCGA 1 cut(s) 388
BspACI CCGC 3 cut(s) 111, 246, 300
BspANI GGCC 9 cut(s) 125, 215, 299, 366, 421, 532, 808, 814, 976
BspDI ATCGAT 1 cut(s) 507
BspFNI CGCG 1 cut(s) 388
BspLI GGNNCC 3 cut(s) 56, 501, 970
BspMAI CTGCAG 1 cut(s) 786
BspMI ACCTGC 2 cut(s) 481, 775
BspQI GCTCTTC 1 cut(s) 143
BsrI ACTGG 1 cut(s) 944
BssECI CCNNGG 2 cut(s) 809, 1058
BssMI GATC 3 cut(s) 391, 504, 547
BssNI GRCGYC 1 cut(s) 161
BssSI CACGAG 1 cut(s) 702
BssT1I CCWWGG 1 cut(s) 1058
Bst2BI CACGAG 1 cut(s) 702
Bst2UI CCWGG 2 cut(s) 810, 973
Bst4CI ACNGT 2 cut(s) 716, 861
Bst6I CTCTTC 2 cut(s) 143, 1179
BstACI GRCGYC 1 cut(s) 161
BstBAI YACGTR 1 cut(s) 893
BstC8I GCNNGC 1 cut(s) 26
BstDEI CTNAG 2 cut(s) 319, 1017
BstEII GGTNACC 1 cut(s) 32
BstFNI CGCG 1 cut(s) 388
BstKTI GATC 3 cut(s) 394, 507, 550
BstMAI GTCTC 2 cut(s) 168, 549
BstMBI GATC 3 cut(s) 391, 504, 547
BstMCI CGRYCG 1 cut(s) 507
BstMWI GCNNNNNNNGC 2 cut(s) 363, 968
BstNI CCWGG 2 cut(s) 810, 973
BstNSI RCATGY 2 cut(s) 28, 1123
BstPI GGTNACC 1 cut(s) 32
BstSCI CCNGG 2 cut(s) 808, 971
BstSFI CTRYAG 3 cut(s) 49, 397, 782
BstUI CGCG 1 cut(s) 388
BstV1I GCAGC 4 cut(s) 95, 616, 619, 710
BstXI CCANNNNNNTGG 1 cut(s) 666
Bsu15I ATCGAT 1 cut(s) 507
BsuRI GGCC 9 cut(s) 125, 215, 299, 366, 421, 532, 808, 814, 976
BsuTUI ATCGAT 1 cut(s) 507
BtgZI GCGATG 2 cut(s) 202, 871
BtsI GCAGTG 1 cut(s) 685
BtsIMutI CAGTG 2 cut(s) 543, 685
BtuMI TCGCGA 1 cut(s) 388
BveI ACCTGC 2 cut(s) 481, 775
Cac8I GCNNGC 1 cut(s) 26
CaiI CAGNNNCTG 1 cut(s) 1093
Cfr13I GGNCC 5 cut(s) 54, 297, 728, 806, 812
ClaI ATCGAT 1 cut(s) 507
CseI GACGC 1 cut(s) 150
Csp6I GTAC 2 cut(s) 199, 476
CviAII CATG 7 cut(s) 25, 29, 458, 487, 524, 551, 1120
CviQI GTAC 2 cut(s) 199, 476
DdeI CTNAG 2 cut(s) 319, 1017
DpnI GATC 3 cut(s) 393, 506, 549
DpnII GATC 3 cut(s) 391, 504, 547
Eam1104I CTCTTC 2 cut(s) 143, 1179
EarI CTCTTC 2 cut(s) 143, 1179
Eco130I CCWWGG 1 cut(s) 1058
Eco147I AGGCCT 2 cut(s) 421, 976
Eco47I GGWCC 2 cut(s) 54, 728
Eco57I CTGAAG 1 cut(s) 1116
Eco72I CACGTG 1 cut(s) 893
Eco91I GGTNACC 1 cut(s) 32
EcoO109I RGGNCCY 2 cut(s) 54, 812
EcoO65I GGTNACC 1 cut(s) 32
EcoRI GAATTC 1 cut(s) 983
EcoRII CCWGG 2 cut(s) 808, 971
EcoT14I CCWWGG 1 cut(s) 1058
EcoT22I ATGCAT 1 cut(s) 30
ErhI CCWWGG 1 cut(s) 1058
Esp3I CGTCTC 1 cut(s) 168
FaeI CATG 7 cut(s) 28, 32, 461, 490, 527, 554, 1123
FalI AAGNNNNNCTT 2 cut(s) 1135, 1167
FaqI GGGAC 1 cut(s) 788
FatI CATG 7 cut(s) 24, 28, 457, 486, 523, 550, 1119
FbaI TGATCA 1 cut(s) 547
FblI GTMKAC 1 cut(s) 48
Fnu4HI GCNGC 7 cut(s) 109, 112, 247, 300, 630, 633, 699
Fsp4HI GCNGC 7 cut(s) 109, 112, 247, 300, 630, 633, 699
FspBI CTAG 3 cut(s) 644, 855, 1059
GluI GCNGC 7 cut(s) 109, 112, 247, 300, 630, 633, 699
GsaI CCCAGC 2 cut(s) 333, 620
HaeIII GGCC 9 cut(s) 125, 215, 299, 366, 421, 532, 808, 814, 976
HapII CCGG 3 cut(s) 175, 207, 731
HgaI GACGC 1 cut(s) 150
Hin1I GRCGYC 1 cut(s) 161
Hin1II CATG 7 cut(s) 28, 32, 461, 490, 527, 554, 1123
HindIII AAGCTT 2 cut(s) 258, 927
HinfI GANTC 7 cut(s) 75, 800, 823, 1031, 1063, 1076, 1127
HpaII CCGG 3 cut(s) 175, 207, 731
HphI GGTGA 5 cut(s) 44, 745, 776, 874, 955
Hpy166II GTNNAC 4 cut(s) 49, 478, 538, 767
Hpy188I TCNGA 4 cut(s) 347, 1027, 1126, 1135
Hpy188III TCNNGA 8 cut(s) 130, 387, 464, 605, 752, 917, 1094, 1112
Hpy8I GTNNAC 4 cut(s) 49, 478, 538, 767
HpyAV CCTTC 5 cut(s) 11, 362, 581, 589, 1118
HpyCH4III ACNGT 2 cut(s) 716, 861
HpyCH4IV ACGT 2 cut(s) 474, 892
HpyF10VI GCNNNNNNNGC 2 cut(s) 363, 968
HpyF3I CTNAG 2 cut(s) 319, 1017
HpySE526I ACGT 2 cut(s) 474, 892
Hsp92I GRCGYC 1 cut(s) 161
Hsp92II CATG 7 cut(s) 28, 32, 461, 490, 527, 554, 1123
Ksp22I TGATCA 1 cut(s) 547
Kzo9I GATC 3 cut(s) 391, 504, 547
LguI GCTCTTC 1 cut(s) 143
LmnI GCTCC 3 cut(s) 226, 968, 1003
Lsp1109I GCAGC 4 cut(s) 95, 616, 619, 710
LweI GCATC 2 cut(s) 616, 1126
MaeI CTAG 3 cut(s) 644, 855, 1059
MaeII ACGT 2 cut(s) 474, 892
MaeIII GTNAC 2 cut(s) 32, 733
MalI GATC 3 cut(s) 393, 506, 549
MboI GATC 3 cut(s) 391, 504, 547
MboII GAAGA 4 cut(s) 160, 190, 1122, 1196
MluCI AATT 6 cut(s) 6, 692, 739, 898, 983, 1147
MlyI GAGTC 1 cut(s) 1025
MmeI TCCRAC 1 cut(s) 85
Mph1103I ATGCAT 1 cut(s) 30
MseI TTAA 2 cut(s) 155, 864
MslI CAYNNNNRTG 1 cut(s) 462
MspI CCGG 3 cut(s) 175, 207, 731
MspR9I CCNGG 2 cut(s) 810, 973
MvaI CCWGG 2 cut(s) 810, 973
MvnI CGCG 1 cut(s) 388
MwoI GCNNNNNNNGC 2 cut(s) 363, 968
NdeII GATC 3 cut(s) 391, 504, 547
NlaIII CATG 7 cut(s) 28, 32, 461, 490, 527, 554, 1123
NlaIV GGNNCC 3 cut(s) 56, 501, 970
NmuCI GTSAC 2 cut(s) 32, 733
NruI TCGCGA 1 cut(s) 388
NsiI ATGCAT 1 cut(s) 30
NspI RCATGY 2 cut(s) 28, 1123
PaeI GCATGC 1 cut(s) 28
PceI AGGCCT 2 cut(s) 421, 976
PciI ACATGT 1 cut(s) 1119
PciSI GCTCTTC 1 cut(s) 143
PfeI GAWTC 6 cut(s) 75, 800, 823, 1063, 1076, 1127
PflFI GACNNNGTC 1 cut(s) 44
PkrI GCNGC 7 cut(s) 110, 113, 248, 301, 631, 634, 700
Ple19I CGATCG 1 cut(s) 507
PleI GAGTC 1 cut(s) 1025
PmaCI CACGTG 1 cut(s) 893
PmlI CACGTG 1 cut(s) 893
PpsI GAGTC 1 cut(s) 1025
Ppu21I YACGTR 1 cut(s) 893
PpuMI RGGWCCY 1 cut(s) 54
PscI ACATGT 1 cut(s) 1119
PsiI TTATAA 3 cut(s) 381, 429, 1173
Psp5II RGGWCCY 1 cut(s) 54
Psp6I CCWGG 2 cut(s) 808, 971
PspCI CACGTG 1 cut(s) 893
PspEI GGTNACC 1 cut(s) 32
PspFI CCCAGC 2 cut(s) 329, 616
PspGI CCWGG 2 cut(s) 808, 971
PspN4I GGNNCC 3 cut(s) 56, 501, 970
PspPI GGNCC 5 cut(s) 54, 297, 728, 806, 812
PspPPI RGGWCCY 1 cut(s) 54
PsrI GAACNNNNNNTAC 2 cut(s) 444, 476
PstI CTGCAG 1 cut(s) 786
PstNI CAGNNNCTG 1 cut(s) 1093
PsyI GACNNNGTC 1 cut(s) 44
PvuI CGATCG 1 cut(s) 507
RruI TCGCGA 1 cut(s) 388
RsaI GTAC 2 cut(s) 200, 477
RsaNI GTAC 2 cut(s) 199, 476
RseI CAYNNNNRTG 1 cut(s) 462
SapI GCTCTTC 1 cut(s) 143
SaqAI TTAA 2 cut(s) 155, 864
SatI GCNGC 7 cut(s) 109, 112, 247, 300, 630, 633, 699
Sau3AI GATC 3 cut(s) 391, 504, 547
Sau96I GGNCC 5 cut(s) 54, 297, 728, 806, 812
ScaI AGTACT 1 cut(s) 200
SchI GAGTC 1 cut(s) 1025
ScrFI CCNGG 2 cut(s) 810, 973
SfaNI GCATC 2 cut(s) 616, 1126
SfcI CTRYAG 3 cut(s) 49, 397, 782
SinI GGWCC 2 cut(s) 54, 728
SmiMI CAYNNNNRTG 1 cut(s) 462
SmlI CTYRAG 1 cut(s) 1033
SmoI CTYRAG 1 cut(s) 1033
SphI GCATGC 1 cut(s) 28
Sse9I AATT 6 cut(s) 6, 692, 739, 898, 983, 1147
SseBI AGGCCT 2 cut(s) 421, 976
SsiI CCGC 3 cut(s) 111, 246, 300
SspMI CTAG 3 cut(s) 644, 855, 1059
StuI AGGCCT 2 cut(s) 421, 976
StyD4I CCNGG 2 cut(s) 808, 971
StyI CCWWGG 1 cut(s) 1058
TaaI ACNGT 2 cut(s) 716, 861
TaiI ACGT 2 cut(s) 477, 895
TaqI TCGA 6 cut(s) 39, 93, 495, 507, 846, 934
TasI AATT 6 cut(s) 6, 692, 739, 898, 983, 1147
TatI WGTACW 1 cut(s) 198
TauI GCSGC 3 cut(s) 114, 249, 302
TfiI GAWTC 6 cut(s) 75, 800, 823, 1063, 1076, 1127
Tru1I TTAA 2 cut(s) 155, 864
Tru9I TTAA 2 cut(s) 155, 864
TscAI CASTG 2 cut(s) 550, 692
TseFI GTSAC 2 cut(s) 32, 733
TseI GCWGC 4 cut(s) 108, 629, 632, 698
Tsp45I GTSAC 2 cut(s) 32, 733
TspDTI ATGAA 6 cut(s) 17, 150, 197, 229, 447, 1183
TspGWI ACGGA 1 cut(s) 303
TspRI CASTG 2 cut(s) 550, 692
Tth111I GACNNNGTC 1 cut(s) 44
VpaK11BI GGWCC 2 cut(s) 54, 728
XapI RAATTY 5 cut(s) 692, 739, 898, 983, 1147
XceI RCATGY 2 cut(s) 28, 1123
XmaJI CCTAGG 1 cut(s) 1058
XmiI GTMKAC 1 cut(s) 48
XspI CTAG 3 cut(s) 644, 855, 1059
ZrmI AGTACT 1 cut(s) 200
Zsp2I ATGCAT 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.