Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002005

Physical Location & Seq

Genomic Coordinates Forward (+)

43585461 .. 43586270

Gene Structure 810 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0285600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGAGAGCTCTCAAAGGCATTGTCGTTTTCTATTTGTGTGCAGCTTTAGCCCTGAGTATCTTCCCGGGATCCTCTGCCAAAGCGCCCGGTCTTGATCCCACCGACTGGCATGTGCACGTGGTTAACGGTTTCAGTGGGCGAAGAGCACTGGTGGTCCACTGTAAGTCCGACGTCAACGATCTCGGCACCCATACTCTTTATCCTGGTGGCGACTTCAATTGGAATTTCCATGTCAACTTGCCCGGGTCAACGCGTTTCACTTGCGACTTCCATGCAGACAAACAACACGCTTCATTTGATGTGTTTTGGAAGGAGAGTCAACATATGTGGCTTCGGACCAGATGCAATTGGAAAGCGTGCTTTTGGACTGCGAAAGATGATGGGATTTACCTCAAAAACGTTCCAGAGAATCGTGACGAGCGTATTCATCCATGGGAAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0008419 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DBR1 Metallophos peroxidase

Protein Analysis

147

Amino Acids

16.85

Weight (kDa)

7.73

Isoelectric Point (pI)

28.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Self-incomp_S1	PF05938	37 - 145	5.3e-27	Plant self-incompatibility protein S1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002005)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31770 AT4G31770
fragaria_vesca	FvH4_2g41360 FvH4_6g29560
malus_domestica	MD08G1051300.v1.1 MD13G1228500.v1.1 MD15G1043800.v1.1
prunus_persica	Prupe.1G397300_v2.0.a1 Prupe.1G397300_v2.0.a1 Prupe.1G397300_v2.0.a1 Prupe.1G397300_v2.0.a1 Prupe.1G397300_v2.0.a1 Prupe.1G397300_v2.0.a1
pyrus_communis	pycom15g04070
rosa_chinensis	RchiOBHm_Chr1g0357361 RchiOBHm_Chr2g0135121 RchiOBHm_Chr6g0299131
rosa_laevigata	RLG00000011460 RLG00000019443 RLG00000028022
rosa_multiflora	Rmu_co8086444.1_g000001 Rmu_sc0001385.1_g000017 Rmu_sc0001434.1_g000018 Rmu_sc0003543.1_g000005
rosa_roxburghii	Rroxscaffold_2G00109470 Rroxscaffold_7G00168980
rosa_rugosa	Rorug01G0256500 Rorug02G0323300 Rorug06G0285600
rosa_samantha	Rh1AG270400 Rh1CG254100 Rh1CG254200 Rh2AG371700 Rh2BG379800 Rh2CG358900 Rh2DG396400 Rh6AG396600 Rh6BG404800 Rh6BG405000 Rh6CG411100 Rh6DG397800
rosa_wichuraiana	Rw0G013580 Rw1G023910 Rw1G023940 Rw6G034720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	174
AccB1I	GGYRCC	1 cut(s)	185
AccB7I	CCANNNNNTGG	1 cut(s)	105
AccII	CGCG	1 cut(s)	253
AclI	AACGTT	1 cut(s)	399
AclWI	GGATC	3 cut(s)	63, 76, 89
AcsI	RAATTY	1 cut(s)	223
AcvI	CACGTG	1 cut(s)	118
AcyI	GRCGYC	1 cut(s)	171
AfiI	CCNNNNNNNGG	1 cut(s)	105
AflIII	ACRYGT	1 cut(s)	251
AgsI	TTSAA	1 cut(s)	217
AjnI	CCWGG	1 cut(s)	202
AluBI	AGCT	2 cut(s)	8, 44
AluI	AGCT	2 cut(s)	8, 44
Alw21I	GWGCWC	3 cut(s)	10, 117, 148
Alw44I	GTGCAC	1 cut(s)	113
AlwI	GGATC	3 cut(s)	63, 76, 89
Ama87I	CYCGRG	2 cut(s)	64, 242
ApaLI	GTGCAC	1 cut(s)	113
ApeKI	GCWGC	1 cut(s)	41
ApoI	RAATTY	1 cut(s)	223
ArsI	GACNNNNNNTTYG	1 cut(s)	38
AspLEI	GCGC	1 cut(s)	85
AspS9I	GGNCC	2 cut(s)	154, 336
AsuC2I	CCSGG	5 cut(s)	65, 66, 87, 243, 244
AvaI	CYCGRG	2 cut(s)	64, 242
AvaII	GGWCC	2 cut(s)	154, 336
BaeGI	GKGCMC	1 cut(s)	117
BamHI	GGATCC	1 cut(s)	68
BanI	GGYRCC	1 cut(s)	185
BanII	GRGCYC	1 cut(s)	10
BbrPI	CACGTG	1 cut(s)	118
Bbv12I	GWGCWC	3 cut(s)	10, 117, 148
BbvI	GCAGC	1 cut(s)	53
BccI	CCATC	1 cut(s)	374
BcgI	CGANNNNNNTGC	2 cut(s)	254, 288
BciT130I	CCWGG	1 cut(s)	204
BcnI	CCSGG	5 cut(s)	65, 66, 87, 243, 244
BfoI	RGCGCY	1 cut(s)	86
BisI	GCNGC	1 cut(s)	42
BlsI	GCNGC	1 cut(s)	43
Bme1390I	CCNGG	6 cut(s)	65, 66, 87, 204, 243, 244
Bme18I	GGWCC	2 cut(s)	154, 336
BmeT110I	CYCGRG	2 cut(s)	64, 242
BmgT120I	GGNCC	2 cut(s)	154, 336
BmiI	GGNNCC	2 cut(s)	70, 187
BmrFI	CCNGG	6 cut(s)	65, 66, 87, 204, 243, 244
BmsI	GCATC	1 cut(s)	332
BpuMI	CCSGG	5 cut(s)	65, 66, 87, 243, 244
BsaAI	YACGTR	1 cut(s)	118
BsaHI	GRCGYC	1 cut(s)	171
BsaJI	CCNNGG	3 cut(s)	64, 242, 431
Bsc4I	CCNNNNNNNGG	1 cut(s)	105
Bse1I	ACTGG	2 cut(s)	110, 153
BseBI	CCWGG	1 cut(s)	204
BseDI	CCNNGG	3 cut(s)	64, 242, 431
BseGI	GGATG	1 cut(s)	427
BseLI	CCNNNNNNNGG	1 cut(s)	105
BseMII	CTCAG	1 cut(s)	44
BseNI	ACTGG	2 cut(s)	110, 153
BseSI	GKGCMC	1 cut(s)	117
BseXI	GCAGC	1 cut(s)	53
BsgI	GTGCAG	1 cut(s)	60
Bsh1236I	CGCG	1 cut(s)	253
BshNI	GGYRCC	1 cut(s)	185
BsiHKAI	GWGCWC	3 cut(s)	10, 117, 148
BsiHKCI	CYCGRG	2 cut(s)	64, 242
BsiSI	CCGG	3 cut(s)	65, 87, 243
BslI	CCNNNNNNNGG	1 cut(s)	105
BsoBI	CYCGRG	2 cut(s)	64, 242
Bsp1286I	GDGCHC	3 cut(s)	10, 117, 148
Bsp143I	GATC	3 cut(s)	68, 94, 178
Bsp19I	CCATGG	1 cut(s)	431
BspCNI	CTCAG	1 cut(s)	45
BspFNI	CGCG	1 cut(s)	253
BspLI	GGNNCC	2 cut(s)	70, 187
BspPI	GGATC	3 cut(s)	63, 76, 89
BspQI	GCTCTTC	1 cut(s)	136
BspT107I	GGYRCC	1 cut(s)	185
BsrI	ACTGG	2 cut(s)	110, 153
BssECI	CCNNGG	3 cut(s)	64, 242, 431
BssMI	GATC	3 cut(s)	68, 94, 178
BssNI	GRCGYC	1 cut(s)	171
BssT1I	CCWWGG	1 cut(s)	431
Bst2UI	CCWGG	1 cut(s)	204
Bst4CI	ACNGT	2 cut(s)	128, 161
Bst6I	CTCTTC	1 cut(s)	136
BstACI	GRCGYC	1 cut(s)	171
BstBAI	YACGTR	1 cut(s)	118
BstC8I	GCNNGC	1 cut(s)	358
BstDEI	CTNAG	1 cut(s)	53
BstDSI	CCRYGG	1 cut(s)	431
BstF5I	GGATG	1 cut(s)	427
BstFNI	CGCG	1 cut(s)	253
BstH2I	RGCGCY	1 cut(s)	86
BstHHI	GCGC	1 cut(s)	85
BstKTI	GATC	3 cut(s)	71, 97, 181
BstMBI	GATC	3 cut(s)	68, 94, 178
BstMWI	GCNNNNNNNGC	1 cut(s)	47
BstNI	CCWGG	1 cut(s)	204
BstNSI	RCATGY	1 cut(s)	113
BstSCI	CCNGG	6 cut(s)	63, 64, 85, 202, 241, 242
BstSLI	GKGCMC	1 cut(s)	117
BstUI	CGCG	1 cut(s)	253
BstV1I	GCAGC	1 cut(s)	53
BstX2I	RGATCY	1 cut(s)	68
BstYI	RGATCY	1 cut(s)	68
BtgI	CCRYGG	1 cut(s)	431
BtsCI	GGATG	1 cut(s)	427
BtsIMutI	CAGTG	3 cut(s)	139, 146, 157
Cac8I	GCNNGC	1 cut(s)	358
CfoI	GCGC	1 cut(s)	85
Cfr13I	GGNCC	2 cut(s)	154, 336
Cfr9I	CCCGGG	2 cut(s)	64, 242
CspCI	CAANNNNNGTGG	2 cut(s)	308, 343
CviAII	CATG	5 cut(s)	110, 230, 272, 432, 441
CviJI	RGCY	4 cut(s)	8, 44, 50, 331
CviKI_1	RGCY	4 cut(s)	8, 44, 50, 331
DdeI	CTNAG	1 cut(s)	53
DpnI	GATC	3 cut(s)	70, 96, 180
DpnII	GATC	3 cut(s)	68, 94, 178
Eam1104I	CTCTTC	1 cut(s)	136
EarI	CTCTTC	1 cut(s)	136
Ecl136II	GAGCTC	1 cut(s)	8
Eco130I	CCWWGG	1 cut(s)	431
Eco24I	GRGCYC	1 cut(s)	10
Eco47I	GGWCC	2 cut(s)	154, 336
Eco53kI	GAGCTC	1 cut(s)	8
Eco72I	CACGTG	1 cut(s)	118
Eco88I	CYCGRG	2 cut(s)	64, 242
EcoICRI	GAGCTC	1 cut(s)	8
EcoRII	CCWGG	1 cut(s)	202
EcoT14I	CCWWGG	1 cut(s)	431
EcoT38I	GRGCYC	1 cut(s)	10
ErhI	CCWWGG	1 cut(s)	431
FaeI	CATG	5 cut(s)	113, 233, 275, 435, 444
FaiI	YATR	8 cut(s)	111, 192, 231, 273, 324, 326, 433, 442
FatI	CATG	5 cut(s)	109, 229, 271, 431, 440
FauNDI	CATATG	1 cut(s)	324
Fnu4HI	GCNGC	1 cut(s)	42
FokI	GGATG	1 cut(s)	414
FriOI	GRGCYC	1 cut(s)	10
Fsp4HI	GCNGC	1 cut(s)	42
GlaI	GCGC	1 cut(s)	84
GluI	GCNGC	1 cut(s)	42
HaeII	RGCGCY	1 cut(s)	86
HapII	CCGG	3 cut(s)	65, 87, 243
HhaI	GCGC	1 cut(s)	85
Hin1I	GRCGYC	1 cut(s)	171
Hin1II	CATG	5 cut(s)	113, 233, 275, 435, 444
Hin6I	GCGC	1 cut(s)	83
HinP1I	GCGC	1 cut(s)	83
HincII	GTYRAC	5 cut(s)	124, 175, 235, 249, 320
HindII	GTYRAC	5 cut(s)	124, 175, 235, 249, 320
HinfI	GANTC	2 cut(s)	316, 409
HpaI	GTTAAC	1 cut(s)	124
HpaII	CCGG	3 cut(s)	65, 87, 243
Hpy166II	GTNNAC	7 cut(s)	115, 124, 157, 175, 235, 249, 320
Hpy188I	TCNGA	2 cut(s)	169, 336
Hpy188III	TCNNGA	3 cut(s)	92, 404, 413
Hpy8I	GTNNAC	7 cut(s)	115, 124, 157, 175, 235, 249, 320
Hpy99I	CGWCG	1 cut(s)	173
HpyAV	CCTTC	1 cut(s)	304
HpyCH4III	ACNGT	2 cut(s)	128, 161
HpyCH4IV	ACGT	3 cut(s)	117, 171, 399
HpyCH4V	TGCA	4 cut(s)	41, 115, 275, 345
HpyF10VI	GCNNNNNNNGC	1 cut(s)	47
HpyF3I	CTNAG	1 cut(s)	53
HpySE526I	ACGT	3 cut(s)	117, 171, 399
Hsp92I	GRCGYC	1 cut(s)	171
Hsp92II	CATG	5 cut(s)	113, 233, 275, 435, 444
HspAI	GCGC	1 cut(s)	83
KspAI	GTTAAC	1 cut(s)	124
Kzo9I	GATC	3 cut(s)	68, 94, 178
LguI	GCTCTTC	1 cut(s)	136
Lsp1109I	GCAGC	1 cut(s)	53
LweI	GCATC	1 cut(s)	332
MaeII	ACGT	3 cut(s)	117, 171, 399
MaeIII	GTNAC	1 cut(s)	413
MalI	GATC	3 cut(s)	70, 96, 180
MboI	GATC	3 cut(s)	68, 94, 178
MboII	GAAGA	2 cut(s)	52, 153
MfeI	CAATTG	2 cut(s)	217, 346
MflI	RGATCY	1 cut(s)	68
MhlI	GDGCHC	3 cut(s)	10, 117, 148
MluCI	AATT	3 cut(s)	217, 223, 346
MluI	ACGCGT	1 cut(s)	251
MlyI	GAGTC	1 cut(s)	325
MmeI	TCCRAC	1 cut(s)	192
MnlI	CCTC	2 cut(s)	82, 401
MseI	TTAA	1 cut(s)	123
MspI	CCGG	3 cut(s)	65, 87, 243
MspR9I	CCNGG	6 cut(s)	65, 66, 87, 204, 243, 244
MunI	CAATTG	2 cut(s)	217, 346
MvaI	CCWGG	1 cut(s)	204
MvnI	CGCG	1 cut(s)	253
MwoI	GCNNNNNNNGC	1 cut(s)	47
NciI	CCSGG	5 cut(s)	65, 66, 87, 243, 244
NcoI	CCATGG	1 cut(s)	431
NdeI	CATATG	1 cut(s)	324
NdeII	GATC	3 cut(s)	68, 94, 178
NlaIII	CATG	5 cut(s)	113, 233, 275, 435, 444
NlaIV	GGNNCC	2 cut(s)	70, 187
NmeAIII	GCCGAG	1 cut(s)	162
NmuCI	GTSAC	1 cut(s)	413
NspI	RCATGY	1 cut(s)	113
PciSI	GCTCTTC	1 cut(s)	136
PcsI	WCGNNNNNNNCGW	1 cut(s)	418
PfeI	GAWTC	1 cut(s)	409
PflMI	CCANNNNNTGG	1 cut(s)	105
PkrI	GCNGC	1 cut(s)	43
PleI	GAGTC	1 cut(s)	324
PmaCI	CACGTG	1 cut(s)	118
PmlI	CACGTG	1 cut(s)	118
PpsI	GAGTC	1 cut(s)	324
Ppu21I	YACGTR	1 cut(s)	118
Psp124BI	GAGCTC	1 cut(s)	10
Psp1406I	AACGTT	1 cut(s)	399
Psp6I	CCWGG	1 cut(s)	202
PspCI	CACGTG	1 cut(s)	118
PspGI	CCWGG	1 cut(s)	202
PspN4I	GGNNCC	2 cut(s)	70, 187
PspPI	GGNCC	2 cut(s)	154, 336
PsuI	RGATCY	1 cut(s)	68
SacI	GAGCTC	1 cut(s)	10
SapI	GCTCTTC	1 cut(s)	136
SaqAI	TTAA	1 cut(s)	123
SatI	GCNGC	1 cut(s)	42
Sau3AI	GATC	3 cut(s)	68, 94, 178
Sau96I	GGNCC	2 cut(s)	154, 336
SchI	GAGTC	1 cut(s)	325
ScrFI	CCNGG	6 cut(s)	65, 66, 87, 204, 243, 244
SduI	GDGCHC	3 cut(s)	10, 117, 148
SetI	ASST	6 cut(s)	10, 46, 120, 174, 393, 402
SfaNI	GCATC	1 cut(s)	332
SinI	GGWCC	2 cut(s)	154, 336
SmaI	CCCGGG	2 cut(s)	66, 244
Sse9I	AATT	3 cut(s)	217, 223, 346
SstI	GAGCTC	1 cut(s)	10
StyD4I	CCNGG	6 cut(s)	63, 64, 85, 202, 241, 242
StyI	CCWWGG	1 cut(s)	431
TaaI	ACNGT	2 cut(s)	128, 161
TaiI	ACGT	3 cut(s)	120, 174, 402
TasI	AATT	3 cut(s)	217, 223, 346
TfiI	GAWTC	1 cut(s)	409
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
TscAI	CASTG	3 cut(s)	139, 153, 164
TseFI	GTSAC	1 cut(s)	413
TseI	GCWGC	1 cut(s)	41
Tsp45I	GTSAC	1 cut(s)	413
TspDTI	ATGAA	2 cut(s)	282, 416
TspMI	CCCGGG	2 cut(s)	64, 242
TspRI	CASTG	3 cut(s)	139, 153, 164
Van91I	CCANNNNNTGG	1 cut(s)	105
VneI	GTGCAC	1 cut(s)	113
VpaK11BI	GGWCC	2 cut(s)	154, 336
XapI	RAATTY	1 cut(s)	223
XceI	RCATGY	1 cut(s)	113
XmaI	CCCGGG	2 cut(s)	64, 242
ZraI	GACGTC	1 cut(s)	172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.