Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8086444.1

Orthogroup ID

OG0002005

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 504

Gene Structure 503 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8086444.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 344 bp

atgaactccttctggaagtactattccggcgaggagatcgctccctatcccaccatattcatcggtggcaatcacgaagcttctaattatttgtgggaactgtactacggtgggtgggcggcacctaatatgtacttcttggggtttgctggggtagtcaagttcggaaaccttcgcattggtggcctctctggaatttataagtcgcgagactatcgttcaggacactatgagaggcctccttataatgcaaataccgtcaagtctgtatatcatgttcgtgagtatgatgtccacaaactcatgcaagttgaggaaccaatcgatatttttctttcacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0008419 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DBR1 Metallophos peroxidase

Protein Analysis

114

Amino Acids

13.26

Weight (kDa)

6.5

Isoelectric Point (pI)

42.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002005)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31770 AT4G31770
fragaria_vesca	FvH4_2g41360 FvH4_6g29560
malus_domestica	MD08G1051300.v1.1 MD13G1228500.v1.1 MD15G1043800.v1.1
prunus_persica	Prupe.1G397300_v2.0.a1 Prupe.1G397300_v2.0.a1 Prupe.1G397300_v2.0.a1 Prupe.1G397300_v2.0.a1 Prupe.1G397300_v2.0.a1 Prupe.1G397300_v2.0.a1
pyrus_communis	pycom15g04070
rosa_chinensis	RchiOBHm_Chr1g0357361 RchiOBHm_Chr2g0135121 RchiOBHm_Chr6g0299131
rosa_laevigata	RLG00000011460 RLG00000019443 RLG00000028022
rosa_multiflora	Rmu_co8086444.1_g000001 Rmu_sc0001385.1_g000017 Rmu_sc0001434.1_g000018 Rmu_sc0003543.1_g000005
rosa_roxburghii	Rroxscaffold_2G00109470 Rroxscaffold_7G00168980
rosa_rugosa	Rorug01G0256500 Rorug02G0323300 Rorug06G0285600
rosa_samantha	Rh1AG270400 Rh1CG254100 Rh1CG254200 Rh2AG371700 Rh2BG379800 Rh2CG358900 Rh2DG396400 Rh6AG396600 Rh6BG404800 Rh6BG405000 Rh6CG411100 Rh6DG397800
rosa_wichuraiana	Rw0G013580 Rw1G023910 Rw1G023940 Rw6G034720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	201, 246
AccB1I	GGYRCC	1 cut(s)	121
AccII	CGCG	1 cut(s)	208
AciI	CCGC	1 cut(s)	119
AcsI	RAATTY	1 cut(s)	195
AfaI	GTAC	3 cut(s)	20, 104, 134
AluBI	AGCT	1 cut(s)	80
AluI	AGCT	1 cut(s)	80
Alw26I	GTCTC	1 cut(s)	204
AoxI	GGCC	2 cut(s)	184, 236
ApoI	RAATTY	1 cut(s)	195
Asp700I	GAANNNNTTC	1 cut(s)	8
BanI	GGYRCC	1 cut(s)	121
BcoDI	GTCTC	1 cut(s)	204
BisI	GCNGC	1 cut(s)	120
BlsI	GCNGC	1 cut(s)	121
BmcAI	AGTACT	1 cut(s)	20
BmiI	GGNNCC	2 cut(s)	123, 318
Bsa29I	ATCGAT	1 cut(s)	324
BseCI	ATCGAT	1 cut(s)	324
BseRI	GAGGAG	1 cut(s)	47
BseYI	CCCAGC	1 cut(s)	149
Bsh1236I	CGCG	1 cut(s)	208
BshFI	GGCC	2 cut(s)	186, 238
BshNI	GGYRCC	1 cut(s)	121
BshVI	ATCGAT	1 cut(s)	324
BsiSI	CCGG	1 cut(s)	27
BsmAI	GTCTC	1 cut(s)	204
BsnI	GGCC	2 cut(s)	186, 238
Bsp143I	GATC	1 cut(s)	36
Bsp68I	TCGCGA	1 cut(s)	208
BspACI	CCGC	1 cut(s)	119
BspANI	GGCC	2 cut(s)	186, 238
BspDI	ATCGAT	1 cut(s)	324
BspFNI	CGCG	1 cut(s)	208
BspLI	GGNNCC	2 cut(s)	123, 318
BspT107I	GGYRCC	1 cut(s)	121
BssMI	GATC	1 cut(s)	36
Bst4CI	ACNGT	3 cut(s)	102, 110, 259
BstFNI	CGCG	1 cut(s)	208
BstKTI	GATC	1 cut(s)	39
BstMAI	GTCTC	1 cut(s)	204
BstMBI	GATC	1 cut(s)	36
BstMWI	GCNNNNNNNGC	1 cut(s)	183
BstUI	CGCG	1 cut(s)	208
Bsu15I	ATCGAT	1 cut(s)	324
BsuRI	GGCC	2 cut(s)	186, 238
BsuTUI	ATCGAT	1 cut(s)	324
BtuMI	TCGCGA	1 cut(s)	208
ClaI	ATCGAT	1 cut(s)	324
Csp6I	GTAC	3 cut(s)	19, 103, 133
CviAII	CATG	3 cut(s)	275, 304, 341
CviJI	RGCY	3 cut(s)	80, 186, 238
CviKI_1	RGCY	3 cut(s)	80, 186, 238
CviQI	GTAC	3 cut(s)	19, 103, 133
DpnI	GATC	1 cut(s)	38
DpnII	GATC	1 cut(s)	36
Eco147I	AGGCCT	1 cut(s)	238
FaeI	CATG	3 cut(s)	278, 307, 344
FatI	CATG	3 cut(s)	274, 303, 340
Fnu4HI	GCNGC	1 cut(s)	120
Fsp4HI	GCNGC	1 cut(s)	120
GluI	GCNGC	1 cut(s)	120
GsaI	CCCAGC	1 cut(s)	153
HaeIII	GGCC	2 cut(s)	186, 238
HapII	CCGG	1 cut(s)	27
Hin1II	CATG	3 cut(s)	278, 307, 344
HindIII	AAGCTT	1 cut(s)	78
HpaII	CCGG	1 cut(s)	27
Hpy166II	GTNNAC	1 cut(s)	295
Hpy188I	TCNGA	1 cut(s)	167
Hpy188III	TCNNGA	6 cut(s)	13, 74, 192, 207, 222, 281
Hpy8I	GTNNAC	1 cut(s)	295
HpyAV	CCTTC	2 cut(s)	19, 182
HpyCH4III	ACNGT	3 cut(s)	102, 110, 259
HpyCH4V	TGCA	2 cut(s)	251, 307
HpyF10VI	GCNNNNNNNGC	1 cut(s)	183
Hsp92II	CATG	3 cut(s)	278, 307, 344
Kzo9I	GATC	1 cut(s)	36
LmnI	GCTCC	1 cut(s)	46
LpnPI	CCDG	4 cut(s)	40, 135, 177, 207
MalI	GATC	1 cut(s)	38
MboI	GATC	1 cut(s)	36
MluCI	AATT	2 cut(s)	85, 195
MnlI	CCTC	5 cut(s)	25, 197, 228, 249, 307
MroXI	GAANNNNTTC	1 cut(s)	8
MslI	CAYNNNNRTG	1 cut(s)	279
MspI	CCGG	1 cut(s)	27
MvnI	CGCG	1 cut(s)	208
MwoI	GCNNNNNNNGC	1 cut(s)	183
NdeII	GATC	1 cut(s)	36
NlaIII	CATG	3 cut(s)	278, 307, 344
NlaIV	GGNNCC	2 cut(s)	123, 318
NruI	TCGCGA	1 cut(s)	208
PceI	AGGCCT	1 cut(s)	238
PdmI	GAANNNNTTC	1 cut(s)	8
PkrI	GCNGC	1 cut(s)	121
PsiI	TTATAA	2 cut(s)	201, 246
PspFI	CCCAGC	1 cut(s)	149
PspN4I	GGNNCC	2 cut(s)	123, 318
PsrI	GAACNNNNNNTAC	2 cut(s)	261, 293
RruI	TCGCGA	1 cut(s)	208
RsaI	GTAC	3 cut(s)	20, 104, 134
RsaNI	GTAC	3 cut(s)	19, 103, 133
RseI	CAYNNNNRTG	1 cut(s)	279
SatI	GCNGC	1 cut(s)	120
Sau3AI	GATC	1 cut(s)	36
ScaI	AGTACT	1 cut(s)	20
SetI	ASST	3 cut(s)	82, 127, 174
SmiMI	CAYNNNNRTG	1 cut(s)	279
Sse9I	AATT	2 cut(s)	85, 195
SseBI	AGGCCT	1 cut(s)	238
SsiI	CCGC	1 cut(s)	119
StuI	AGGCCT	1 cut(s)	238
TaaI	ACNGT	3 cut(s)	102, 110, 259
TaqI	TCGA	1 cut(s)	324
TasI	AATT	2 cut(s)	85, 195
TatI	WGTACW	3 cut(s)	18, 102, 132
TauI	GCSGC	1 cut(s)	122
TspDTI	ATGAA	2 cut(s)	17, 49
XapI	RAATTY	1 cut(s)	195
XmnI	GAANNNNTTC	1 cut(s)	8
ZrmI	AGTACT	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.