Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0002005

Physical Location & Seq

Genomic Coordinates Forward (+)

51805994 .. 51806638

Gene Structure 645 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG254200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGAGAGGCTCTGTATATCATGTTCGTGAGTATGATGTCCACAAACTCATGCAAGTTGAGGAACCAATCGATATTTTTCTTTCACATGATTGGCCTCTTGGCATCACGGATTGTGGGGACTGGAAGCAACTTGTTCGATACAAACCTCATTTTGAGACCGAGGTTCGGGAAAGAACCCTGGGAAGTAAACCTGCTGCTCAATTGCTAGAAAAATTGAAACCACCCTATTGGTTTTCAGCTCATCTACACTGCAAATTTGCTGCTCGTGTTCAGCATGGGGAAGATGGTCCCGTGACGAATTTTCTTGCTCTTGATAAGTGTCTTCCTGGAAAGAAGTTTTTGCAGGTTCTTGATATTGACTCAGAGCCAGGGCCGTACGAGATTCAGTATGATGAAGAATGGCTAGAAATAACTCGAAGGTTTAACCCCATTTTCCCTCTCACAATCAGGAGTGCAAATTTCAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0008419 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DBR1 Metallophos peroxidase

Protein Analysis

155

Amino Acids

18.24

Weight (kDa)

6.16

Isoelectric Point (pI)

31.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DBR1	PF05011	98 - 150	5.3e-19	Lariat debranching enzyme, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002005)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31770 AT4G31770
fragaria_vesca	FvH4_2g41360 FvH4_6g29560
malus_domestica	MD08G1051300.v1.1 MD13G1228500.v1.1 MD15G1043800.v1.1
prunus_persica	Prupe.1G397300_v2.0.a1 Prupe.1G397300_v2.0.a1 Prupe.1G397300_v2.0.a1 Prupe.1G397300_v2.0.a1 Prupe.1G397300_v2.0.a1 Prupe.1G397300_v2.0.a1
pyrus_communis	pycom15g04070
rosa_chinensis	RchiOBHm_Chr1g0357361 RchiOBHm_Chr2g0135121 RchiOBHm_Chr6g0299131
rosa_laevigata	RLG00000011460 RLG00000019443 RLG00000028022
rosa_multiflora	Rmu_co8086444.1_g000001 Rmu_sc0001385.1_g000017 Rmu_sc0001434.1_g000018 Rmu_sc0003543.1_g000005
rosa_roxburghii	Rroxscaffold_2G00109470 Rroxscaffold_7G00168980
rosa_rugosa	Rorug01G0256500 Rorug02G0323300 Rorug06G0285600
rosa_samantha	Rh1AG270400 Rh1CG254100 Rh1CG254200 Rh2AG371700 Rh2BG379800 Rh2CG358900 Rh2DG396400 Rh6AG396600 Rh6BG404800 Rh6BG405000 Rh6CG411100 Rh6DG397800
rosa_wichuraiana	Rw0G013580 Rw1G023910 Rw1G023940 Rw6G034720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	199, 334
AcsI	RAATTY	3 cut(s)	254, 298, 457
AfaI	GTAC	1 cut(s)	377
AfiI	CCNNNNNNNGG	1 cut(s)	165
AgsI	TTSAA	1 cut(s)	217
AjnI	CCWGG	3 cut(s)	177, 325, 367
AluBI	AGCT	1 cut(s)	239
AluI	AGCT	1 cut(s)	239
Alw26I	GTCTC	1 cut(s)	149
AoxI	GGCC	2 cut(s)	92, 371
ApeKI	GCWGC	2 cut(s)	194, 260
ApoI	RAATTY	3 cut(s)	254, 298, 457
AspS9I	GGNCC	2 cut(s)	287, 371
AvaII	GGWCC	1 cut(s)	287
BauI	CACGAG	1 cut(s)	264
BbsI	GAAGAC	1 cut(s)	314
BbvI	GCAGC	2 cut(s)	181, 247
BccI	CCATC	1 cut(s)	278
BceAI	ACGGC	1 cut(s)	358
BcgI	CGANNNNNNTGC	2 cut(s)	116, 150
BciT130I	CCWGG	3 cut(s)	179, 327, 369
BcoDI	GTCTC	1 cut(s)	149
BfaI	CTAG	2 cut(s)	206, 404
BfuAI	ACCTGC	2 cut(s)	199, 334
BisI	GCNGC	2 cut(s)	195, 261
BlsI	GCNGC	2 cut(s)	196, 262
Bme1390I	CCNGG	3 cut(s)	179, 327, 369
Bme18I	GGWCC	1 cut(s)	287
BmgT120I	GGNCC	2 cut(s)	287, 371
BmiI	GGNNCC	2 cut(s)	63, 289
BmrFI	CCNGG	3 cut(s)	179, 327, 369
BmsI	GCATC	1 cut(s)	111
BpiI	GAAGAC	1 cut(s)	314
Bsa29I	ATCGAT	1 cut(s)	69
BsaI	GGTCTC	1 cut(s)	149
BsaJI	CCNNGG	4 cut(s)	159, 177, 178, 368
Bsc4I	CCNNNNNNNGG	1 cut(s)	165
Bse1I	ACTGG	1 cut(s)	125
BseBI	CCWGG	3 cut(s)	179, 327, 369
BseCI	ATCGAT	1 cut(s)	69
BseDI	CCNNGG	4 cut(s)	159, 177, 178, 368
BseLI	CCNNNNNNNGG	1 cut(s)	165
BseMII	CTCAG	1 cut(s)	375
BseNI	ACTGG	1 cut(s)	125
BseXI	GCAGC	2 cut(s)	181, 247
BshFI	GGCC	2 cut(s)	94, 373
BshVI	ATCGAT	1 cut(s)	69
BsiWI	CGTACG	1 cut(s)	375
BslFI	GGGAC	2 cut(s)	131, 273
BslI	CCNNNNNNNGG	1 cut(s)	165
BsmAI	GTCTC	1 cut(s)	149
BsmFI	GGGAC	2 cut(s)	131, 273
BsnI	GGCC	2 cut(s)	94, 373
Bso31I	GGTCTC	1 cut(s)	149
BspANI	GGCC	2 cut(s)	94, 373
BspCNI	CTCAG	1 cut(s)	374
BspDI	ATCGAT	1 cut(s)	69
BspLI	GGNNCC	2 cut(s)	63, 289
BspMI	ACCTGC	2 cut(s)	199, 334
BspTNI	GGTCTC	1 cut(s)	149
BsrI	ACTGG	1 cut(s)	125
BssECI	CCNNGG	4 cut(s)	159, 177, 178, 368
BssSI	CACGAG	1 cut(s)	264
Bst2BI	CACGAG	1 cut(s)	264
Bst2UI	CCWGG	3 cut(s)	179, 327, 369
BstDEI	CTNAG	1 cut(s)	361
BstMAI	GTCTC	1 cut(s)	149
BstNI	CCWGG	3 cut(s)	179, 327, 369
BstSCI	CCNGG	3 cut(s)	177, 325, 367
BstV1I	GCAGC	2 cut(s)	181, 247
BstV2I	GAAGAC	1 cut(s)	314
BstXI	CCANNNNNNTGG	1 cut(s)	228
Bsu15I	ATCGAT	1 cut(s)	69
BsuRI	GGCC	2 cut(s)	94, 373
BsuTUI	ATCGAT	1 cut(s)	69
BtsI	GCAGTG	1 cut(s)	247
BtsIMutI	CAGTG	1 cut(s)	247
BveI	ACCTGC	2 cut(s)	199, 334
Cfr13I	GGNCC	2 cut(s)	287, 371
ClaI	ATCGAT	1 cut(s)	69
Csp6I	GTAC	1 cut(s)	376
CviAII	CATG	4 cut(s)	20, 49, 86, 275
CviJI	RGCY	6 cut(s)	9, 94, 239, 367, 373, 403
CviKI_1	RGCY	6 cut(s)	9, 94, 239, 367, 373, 403
CviQI	GTAC	1 cut(s)	376
DdeI	CTNAG	1 cut(s)	361
Eco31I	GGTCTC	1 cut(s)	149
Eco47I	GGWCC	1 cut(s)	287
EcoRII	CCWGG	3 cut(s)	177, 325, 367
FaeI	CATG	4 cut(s)	23, 52, 89, 278
FaiI	YATR	7 cut(s)	16, 21, 33, 50, 87, 276, 390
FaqI	GGGAC	2 cut(s)	131, 273
FatI	CATG	4 cut(s)	19, 48, 85, 274
Fnu4HI	GCNGC	2 cut(s)	195, 261
Fsp4HI	GCNGC	2 cut(s)	195, 261
FspBI	CTAG	2 cut(s)	206, 404
GluI	GCNGC	2 cut(s)	195, 261
HaeIII	GGCC	2 cut(s)	94, 373
Hin1II	CATG	4 cut(s)	23, 52, 89, 278
HinfI	GANTC	2 cut(s)	359, 382
Hpy166II	GTNNAC	2 cut(s)	40, 188
Hpy188I	TCNGA	1 cut(s)	364
Hpy188III	TCNNGA	5 cut(s)	26, 167, 311, 350, 448
Hpy8I	GTNNAC	2 cut(s)	40, 188
HpyAV	CCTTC	1 cut(s)	411
HpyCH4V	TGCA	4 cut(s)	52, 252, 343, 455
HpyF3I	CTNAG	1 cut(s)	361
Hsp92II	CATG	4 cut(s)	23, 52, 89, 278
Lsp1109I	GCAGC	2 cut(s)	181, 247
LweI	GCATC	1 cut(s)	111
MaeI	CTAG	2 cut(s)	206, 404
MaeIII	GTNAC	1 cut(s)	292
MboII	GAAGA	3 cut(s)	293, 314, 407
MfeI	CAATTG	1 cut(s)	200
MluCI	AATT	5 cut(s)	200, 212, 254, 298, 457
MlyI	GAGTC	1 cut(s)	353
MnlI	CCTC	5 cut(s)	52, 105, 154, 156, 447
MseI	TTAA	1 cut(s)	423
MslI	CAYNNNNRTG	1 cut(s)	24
MspR9I	CCNGG	3 cut(s)	179, 327, 369
MunI	CAATTG	1 cut(s)	200
MvaI	CCWGG	3 cut(s)	179, 327, 369
NlaIII	CATG	4 cut(s)	23, 52, 89, 278
NlaIV	GGNNCC	2 cut(s)	63, 289
NmuCI	GTSAC	1 cut(s)	292
PasI	CCCWGGG	1 cut(s)	178
PfeI	GAWTC	1 cut(s)	382
Pfl23II	CGTACG	1 cut(s)	375
PfoI	TCCNGGA	1 cut(s)	325
PkrI	GCNGC	2 cut(s)	196, 262
PleI	GAGTC	1 cut(s)	353
PpsI	GAGTC	1 cut(s)	353
Psp6I	CCWGG	3 cut(s)	177, 325, 367
PspGI	CCWGG	3 cut(s)	177, 325, 367
PspLI	CGTACG	1 cut(s)	375
PspN4I	GGNNCC	2 cut(s)	63, 289
PspPI	GGNCC	2 cut(s)	287, 371
PsrI	GAACNNNNNNTAC	1 cut(s)	38
RsaI	GTAC	1 cut(s)	377
RsaNI	GTAC	1 cut(s)	376
RseI	CAYNNNNRTG	1 cut(s)	24
SaqAI	TTAA	1 cut(s)	423
SatI	GCNGC	2 cut(s)	195, 261
Sau96I	GGNCC	2 cut(s)	287, 371
SchI	GAGTC	1 cut(s)	353
ScrFI	CCNGG	3 cut(s)	179, 327, 369
SetI	ASST	7 cut(s)	148, 165, 193, 241, 348, 422, 467
SfaNI	GCATC	1 cut(s)	111
SinI	GGWCC	1 cut(s)	287
SmiMI	CAYNNNNRTG	1 cut(s)	24
Sse9I	AATT	5 cut(s)	200, 212, 254, 298, 457
SspMI	CTAG	2 cut(s)	206, 404
StyD4I	CCNGG	3 cut(s)	177, 325, 367
TaqI	TCGA	3 cut(s)	69, 136, 415
TaqII	GACCGA	1 cut(s)	173
TasI	AATT	5 cut(s)	200, 212, 254, 298, 457
TfiI	GAWTC	1 cut(s)	382
Tru1I	TTAA	1 cut(s)	423
Tru9I	TTAA	1 cut(s)	423
TscAI	CASTG	1 cut(s)	254
TseFI	GTSAC	1 cut(s)	292
TseI	GCWGC	2 cut(s)	194, 260
Tsp45I	GTSAC	1 cut(s)	292
TspDTI	ATGAA	1 cut(s)	408
TspGWI	ACGGA	1 cut(s)	122
TspRI	CASTG	1 cut(s)	254
VpaK11BI	GGWCC	1 cut(s)	287
XapI	RAATTY	3 cut(s)	254, 298, 457
XspI	CTAG	2 cut(s)	206, 404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.