Rh6AG396600

Lariat debranching

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Reverse (-)
59575991 .. 59578053
2063 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG396600.1

Sequence Viewer

Length: 1248 bp
ATGAAAATTGCAGTGGAAGGATGTATGCACGGTGACCTGGAGAACGTGTACAGAACCCTCCAGCACATAGAAAAAGTTCATAACACCAAAATCGACCTCCTCCTCTGCTGCGGCGACTTTCAGGCTGTGAGGAATGAGAAGGATTTGGAGAGCTTGAGTGTGCCCCCCAAGTACCGGTCCATGAACTCCTTCTGGAAGTACTATTCCGGCGAGGAGATCGCTCCCTATCCCACCATATTCATCGGTGGCAATCACGAAGCTTCTAATTATTTGTGGGAACTGTACTACGGTGGGTGGGCGGCACCTAATATATACTTCTTGGGGTTTGCTGGGGTAGTCAAGTTCGGAAACCTTCGCATTGGTGGCCTCTCTGGAATTTATAAGTCGCGAGACTATCGTTCAGGACACTATGAGAGGCCTCCTTATAATGCAAATACCGTCAAGTCTGTATATCATGTTCGTGAGTATGATGTCCACAAACTCATGCAAGTTGAGGAACCAATCGATATTTTTCTTTCACATGATTGGCCTCTTGGCATCACCGATTGTGGGGACTGGAAGCAACTTGTTCGATACAAACCTTATTTTGAGACCGAGGTTCGGGAAAGAACCCTGGGAAGTAAACCTGCTGCTCAATTGCTAGAAAAATTGAAACCACCCTATTGGTTTTCAGCTCATCTACACTGCAAATTTGCTGCTCGTGTTCAGCATGGGGAAGATGGTCCCGTGACGAATTTTCTTGCTCTTGATAAGTGTCTTCCTGGAAAGAAGTTTTTACAGGTTCTTGATATTGACTCAGATCCAGGGCCATACGAGATTCAGTATGATGAAGAATGGCTAGAAATAACTCGGAGGTTTAACCCTATTTTCCCTCTCACAATCAGGAGTGCAAATTTCAGGGGTGTACATATTGACAAGCAAGATTGTCGTCAATGGGTAAGGAGTAAGCTGCAAGCAAGAGGAGCCCGACCTTTTGAATTCAGCCAGACAGCTCCATCTTATAATCCCTCTAATTCTGTCTCAAATAGTTCCTCGCCTGGATATACTCGGAATCCTCAAACAGAATCTTTGTTGCAGTTTCTGGAACTCCCTTATCTTCTTGATGACATGTCAGAATCTTCGGAAATATCCAGGAGTCCTTTTCCATCAAGCGATAGAGATGACAGCGAAGAGATTCCCATTGATGATGTGGATGAGTTAGAAGACCTTGCTGAAGAGGCTGGAGATGCTGAACATGAAGATGTATGA

Protein Analysis

415

Amino Acids

47.72

Weight (kDa)

5.11

Isoelectric Point (pI)

52.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Metallophos PF00149 1 - 229 1.2e-14 Calcineurin-like phosphoesterase
DBR1 PF05011 243 - 364 1.2e-28 Lariat debranching enzyme, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 381, 426, 1002
Acc36I ACCTGC 1 cut(s) 634
AccB1I GGYRCC 1 cut(s) 301
AccII CGCG 1 cut(s) 388
AciI CCGC 2 cut(s) 111, 299
AclWI GGATC 1 cut(s) 794
AcsI RAATTY 5 cut(s) 375, 689, 733, 892, 977
AcuI CTGAAG 1 cut(s) 1233
AfaI GTAC 5 cut(s) 50, 173, 200, 284, 906
AfiI CCNNNNNNNGG 3 cut(s) 174, 549, 600
AflIII ACRYGT 2 cut(s) 45, 1107
AgeI ACCGGT 1 cut(s) 174
AgsI TTSAA 2 cut(s) 652, 977
AjnI CCWGG 6 cut(s) 36, 612, 760, 802, 1036, 1130
AluBI AGCT 5 cut(s) 153, 260, 674, 949, 992
AluI AGCT 5 cut(s) 153, 260, 674, 949, 992
Alw26I GTCTC 3 cut(s) 384, 584, 1024
AlwI GGATC 1 cut(s) 794
AlwNI CAGNNNCTG 1 cut(s) 1081
AoxI GGCC 4 cut(s) 364, 416, 527, 806
ApeKI GCWGC 4 cut(s) 108, 629, 695, 949
ApoI RAATTY 5 cut(s) 375, 689, 733, 892, 977
AsiGI ACCGGT 1 cut(s) 174
Asp700I GAANNNNTTC 3 cut(s) 75, 188, 1173
AspS9I GGNCC 3 cut(s) 177, 722, 806
AsuHPI GGTGA 2 cut(s) 44, 532
AvaII GGWCC 2 cut(s) 177, 722
BaeGI GKGCMC 1 cut(s) 165
BanI GGYRCC 1 cut(s) 301
BanII GRGCYC 1 cut(s) 967
BauI CACGAG 1 cut(s) 699
BbsI GAAGAC 2 cut(s) 749, 1209
BbvI GCAGC 4 cut(s) 95, 616, 682, 936
BccI CCATC 3 cut(s) 713, 1003, 1153
BcgI CGANNNNNNTGC 4 cut(s) 551, 585, 908, 942
BciT130I CCWGG 6 cut(s) 38, 614, 762, 804, 1038, 1132
BcoDI GTCTC 3 cut(s) 384, 584, 1024
BfaI CTAG 2 cut(s) 641, 839
BfuAI ACCTGC 1 cut(s) 634
BisI GCNGC 6 cut(s) 109, 112, 300, 630, 696, 950
BlsI GCNGC 6 cut(s) 110, 113, 301, 631, 697, 951
BmcAI AGTACT 1 cut(s) 200
Bme1390I CCNGG 6 cut(s) 38, 614, 762, 804, 1038, 1132
Bme18I GGWCC 2 cut(s) 177, 722
BmgT120I GGNCC 3 cut(s) 177, 722, 806
BmiI GGNNCC 4 cut(s) 303, 498, 724, 964
BmrFI CCNGG 6 cut(s) 38, 614, 762, 804, 1038, 1132
BmsI GCATC 2 cut(s) 546, 1216
BpiI GAAGAC 2 cut(s) 749, 1209
BpmI CTGGAG 3 cut(s) 44, 59, 1242
BpuEI CTTGAG 1 cut(s) 175
Bsa29I ATCGAT 1 cut(s) 504
BsaI GGTCTC 1 cut(s) 584
BsaJI CCNNGG 4 cut(s) 594, 612, 613, 803
BsaWI WCCGGW 1 cut(s) 174
BsaXI ACNNNNNCTCC 2 cut(s) 32, 62
Bsc4I CCNNNNNNNGG 3 cut(s) 174, 549, 600
Bse118I RCCGGY 1 cut(s) 174
Bse1I ACTGG 1 cut(s) 560
BseBI CCWGG 6 cut(s) 38, 614, 762, 804, 1038, 1132
BseCI ATCGAT 1 cut(s) 504
BseDI CCNNGG 4 cut(s) 594, 612, 613, 803
BseGI GGATG 2 cut(s) 26, 1198
BseLI CCNNNNNNNGG 3 cut(s) 174, 549, 600
BseMII CTCAG 1 cut(s) 810
BseNI ACTGG 1 cut(s) 560
BseRI GAGGAG 4 cut(s) 89, 92, 227, 975
BseSI GKGCMC 1 cut(s) 165
BseXI GCAGC 4 cut(s) 95, 616, 682, 936
BseYI CCCAGC 1 cut(s) 329
Bsh1236I CGCG 1 cut(s) 388
BshFI GGCC 4 cut(s) 366, 418, 529, 808
BshNI GGYRCC 1 cut(s) 301
BshTI ACCGGT 1 cut(s) 174
BshVI ATCGAT 1 cut(s) 504
BsiSI CCGG 2 cut(s) 175, 207
BslFI GGGAC 2 cut(s) 566, 708
BslI CCNNNNNNNGG 3 cut(s) 174, 549, 600
BsmAI GTCTC 3 cut(s) 384, 584, 1024
BsmFI GGGAC 2 cut(s) 566, 708
BsnI GGCC 4 cut(s) 366, 418, 529, 808
Bso31I GGTCTC 1 cut(s) 584
Bsp1286I GDGCHC 2 cut(s) 165, 967
Bsp1407I TGTACA 2 cut(s) 48, 904
Bsp143I GATC 2 cut(s) 216, 799
Bsp68I TCGCGA 1 cut(s) 388
BspACI CCGC 2 cut(s) 111, 299
BspANI GGCC 4 cut(s) 366, 418, 529, 808
BspCNI CTCAG 1 cut(s) 809
BspDI ATCGAT 1 cut(s) 504
BspFNI CGCG 1 cut(s) 388
BspLI GGNNCC 4 cut(s) 303, 498, 724, 964
BspMI ACCTGC 1 cut(s) 634
BspPI GGATC 1 cut(s) 794
BspT107I GGYRCC 1 cut(s) 301
BspTNI GGTCTC 1 cut(s) 584
BsrFI RCCGGY 1 cut(s) 174
BsrGI TGTACA 2 cut(s) 48, 904
BsrI ACTGG 1 cut(s) 560
BssAI RCCGGY 1 cut(s) 174
BssECI CCNNGG 4 cut(s) 594, 612, 613, 803
BssMI GATC 2 cut(s) 216, 799
BssSI CACGAG 1 cut(s) 699
Bst2BI CACGAG 1 cut(s) 699
Bst2UI CCWGG 6 cut(s) 38, 614, 762, 804, 1038, 1132
Bst4CI ACNGT 4 cut(s) 32, 282, 290, 439
Bst6I CTCTTC 2 cut(s) 1164, 1209
BstAUI TGTACA 2 cut(s) 48, 904
BstC8I GCNNGC 1 cut(s) 954
BstDEI CTNAG 1 cut(s) 796
BstEII GGTNACC 1 cut(s) 32
BstF5I GGATG 2 cut(s) 26, 1198
BstFNI CGCG 1 cut(s) 388
BstKTI GATC 2 cut(s) 219, 802
BstMAI GTCTC 3 cut(s) 384, 584, 1024
BstMBI GATC 2 cut(s) 216, 799
BstMWI GCNNNNNNNGC 4 cut(s) 363, 962, 1217, 1226
BstNI CCWGG 6 cut(s) 38, 614, 762, 804, 1038, 1132
BstNSI RCATGY 1 cut(s) 1111
BstPI GGTNACC 1 cut(s) 32
BstSCI CCNGG 6 cut(s) 36, 612, 760, 802, 1036, 1130
BstSLI GKGCMC 1 cut(s) 165
BstUI CGCG 1 cut(s) 388
BstV1I GCAGC 4 cut(s) 95, 616, 682, 936
BstV2I GAAGAC 2 cut(s) 749, 1209
BstX2I RGATCY 1 cut(s) 799
BstXI CCANNNNNNTGG 1 cut(s) 663
BstYI RGATCY 1 cut(s) 799
Bsu15I ATCGAT 1 cut(s) 504
BsuRI GGCC 4 cut(s) 366, 418, 529, 808
BsuTUI ATCGAT 1 cut(s) 504
BtsCI GGATG 2 cut(s) 26, 1198
BtsI GCAGTG 2 cut(s) 18, 682
BtsIMutI CAGTG 2 cut(s) 18, 682
BtuMI TCGCGA 1 cut(s) 388
BveI ACCTGC 1 cut(s) 634
Cac8I GCNNGC 1 cut(s) 954
CaiI CAGNNNCTG 1 cut(s) 1081
Cfr10I RCCGGY 1 cut(s) 174
Cfr13I GGNCC 3 cut(s) 177, 722, 806
ClaI ATCGAT 1 cut(s) 504
Csp6I GTAC 5 cut(s) 49, 172, 199, 283, 905
CspAI ACCGGT 1 cut(s) 174
CviAII CATG 7 cut(s) 181, 455, 484, 521, 710, 1108, 1235
CviQI GTAC 5 cut(s) 49, 172, 199, 283, 905
DdeI CTNAG 1 cut(s) 796
DpnI GATC 2 cut(s) 218, 801
DpnII GATC 2 cut(s) 216, 799
Eam1104I CTCTTC 2 cut(s) 1164, 1209
EarI CTCTTC 2 cut(s) 1164, 1209
Eco147I AGGCCT 1 cut(s) 418
Eco24I GRGCYC 1 cut(s) 967
Eco31I GGTCTC 1 cut(s) 584
Eco47I GGWCC 2 cut(s) 177, 722
Eco57I CTGAAG 1 cut(s) 1233
Eco91I GGTNACC 1 cut(s) 32
EcoO65I GGTNACC 1 cut(s) 32
EcoRI GAATTC 1 cut(s) 977
EcoRII CCWGG 6 cut(s) 36, 612, 760, 802, 1036, 1130
EcoT38I GRGCYC 1 cut(s) 967
FaeI CATG 7 cut(s) 184, 458, 487, 524, 713, 1111, 1238
FaqI GGGAC 2 cut(s) 566, 708
FatI CATG 7 cut(s) 180, 454, 483, 520, 709, 1107, 1234
Fnu4HI GCNGC 6 cut(s) 109, 112, 300, 630, 696, 950
FokI GGATG 2 cut(s) 33, 1205
FriOI GRGCYC 1 cut(s) 967
Fsp4HI GCNGC 6 cut(s) 109, 112, 300, 630, 696, 950
FspBI CTAG 2 cut(s) 641, 839
GluI GCNGC 6 cut(s) 109, 112, 300, 630, 696, 950
GsaI CCCAGC 1 cut(s) 333
GsuI CTGGAG 3 cut(s) 44, 59, 1242
HaeIII GGCC 4 cut(s) 366, 418, 529, 808
HapII CCGG 2 cut(s) 175, 207
Hin1II CATG 7 cut(s) 184, 458, 487, 524, 713, 1111, 1238
HindIII AAGCTT 1 cut(s) 258
HinfI GANTC 7 cut(s) 794, 817, 1051, 1064, 1115, 1135, 1174
HpaII CCGG 2 cut(s) 175, 207
HphI GGTGA 2 cut(s) 44, 532
Hpy166II GTNNAC 4 cut(s) 49, 475, 623, 905
Hpy188I TCNGA 6 cut(s) 347, 799, 852, 1050, 1114, 1123
Hpy8I GTNNAC 4 cut(s) 49, 475, 623, 905
HpyAV CCTTC 4 cut(s) 11, 133, 199, 362
HpyCH4III ACNGT 4 cut(s) 32, 282, 290, 439
HpyCH4IV ACGT 1 cut(s) 45
HpyCH4V TGCA 8 cut(s) 11, 28, 431, 487, 687, 890, 952, 1075
HpyF10VI GCNNNNNNNGC 4 cut(s) 363, 962, 1217, 1226
HpyF3I CTNAG 1 cut(s) 796
HpySE526I ACGT 1 cut(s) 45
Hsp92II CATG 7 cut(s) 184, 458, 487, 524, 713, 1111, 1238
Kzo9I GATC 2 cut(s) 216, 799
LmnI GCTCC 3 cut(s) 226, 962, 997
Lsp1109I GCAGC 4 cut(s) 95, 616, 682, 936
LweI GCATC 2 cut(s) 546, 1216
MaeI CTAG 2 cut(s) 641, 839
MaeII ACGT 1 cut(s) 45
MaeIII GTNAC 2 cut(s) 32, 727
MalI GATC 2 cut(s) 218, 801
MboI GATC 2 cut(s) 216, 799
MboII GAAGA 8 cut(s) 728, 749, 842, 1088, 1110, 1181, 1214, 1226
MfeI CAATTG 1 cut(s) 635
MflI RGATCY 1 cut(s) 799
MhlI GDGCHC 2 cut(s) 165, 967
MlyI GAGTC 2 cut(s) 788, 1144
MroXI GAANNNNTTC 3 cut(s) 75, 188, 1173
MseI TTAA 1 cut(s) 858
MslI CAYNNNNRTG 2 cut(s) 459, 1239
MspI CCGG 2 cut(s) 175, 207
MspR9I CCNGG 6 cut(s) 38, 614, 762, 804, 1038, 1132
MunI CAATTG 1 cut(s) 635
MvaI CCWGG 6 cut(s) 38, 614, 762, 804, 1038, 1132
MvnI CGCG 1 cut(s) 388
MwoI GCNNNNNNNGC 4 cut(s) 363, 962, 1217, 1226
NdeII GATC 2 cut(s) 216, 799
NlaIII CATG 7 cut(s) 184, 458, 487, 524, 713, 1111, 1238
NlaIV GGNNCC 4 cut(s) 303, 498, 724, 964
NmuCI GTSAC 2 cut(s) 32, 727
NruI TCGCGA 1 cut(s) 388
NspI RCATGY 1 cut(s) 1111
PasI CCCWGGG 1 cut(s) 613
PceI AGGCCT 1 cut(s) 418
PciI ACATGT 1 cut(s) 1107
PdmI GAANNNNTTC 3 cut(s) 75, 188, 1173
PfeI GAWTC 5 cut(s) 817, 1051, 1064, 1115, 1174
PfoI TCCNGGA 2 cut(s) 760, 1130
PinAI ACCGGT 1 cut(s) 174
PkrI GCNGC 6 cut(s) 110, 113, 301, 631, 697, 951
PleI GAGTC 2 cut(s) 788, 1143
PpsI GAGTC 2 cut(s) 788, 1143
PscI ACATGT 1 cut(s) 1107
PsiI TTATAA 3 cut(s) 381, 426, 1002
Psp6I CCWGG 6 cut(s) 36, 612, 760, 802, 1036, 1130
PspEI GGTNACC 1 cut(s) 32
PspFI CCCAGC 1 cut(s) 329
PspGI CCWGG 6 cut(s) 36, 612, 760, 802, 1036, 1130
PspN4I GGNNCC 4 cut(s) 303, 498, 724, 964
PspPI GGNCC 3 cut(s) 177, 722, 806
PsrI GAACNNNNNNTAC 2 cut(s) 441, 473
PstNI CAGNNNCTG 1 cut(s) 1081
PsuI RGATCY 1 cut(s) 799
RruI TCGCGA 1 cut(s) 388
RsaI GTAC 5 cut(s) 50, 173, 200, 284, 906
RsaNI GTAC 5 cut(s) 49, 172, 199, 283, 905
RseI CAYNNNNRTG 2 cut(s) 459, 1239
SaqAI TTAA 1 cut(s) 858
SatI GCNGC 6 cut(s) 109, 112, 300, 630, 696, 950
Sau3AI GATC 2 cut(s) 216, 799
Sau96I GGNCC 3 cut(s) 177, 722, 806
ScaI AGTACT 1 cut(s) 200
SchI GAGTC 2 cut(s) 788, 1144
ScrFI CCNGG 6 cut(s) 38, 614, 762, 804, 1038, 1132
SduI GDGCHC 2 cut(s) 165, 967
SfaNI GCATC 2 cut(s) 546, 1216
SinI GGWCC 2 cut(s) 177, 722
SmiMI CAYNNNNRTG 2 cut(s) 459, 1239
SmlI CTYRAG 1 cut(s) 154
SmoI CTYRAG 1 cut(s) 154
SseBI AGGCCT 1 cut(s) 418
SsiI CCGC 2 cut(s) 111, 299
SspMI CTAG 2 cut(s) 641, 839
StuI AGGCCT 1 cut(s) 418
StyD4I CCNGG 6 cut(s) 36, 612, 760, 802, 1036, 1130
TaaI ACNGT 4 cut(s) 32, 282, 290, 439
TaiI ACGT 1 cut(s) 48
TaqI TCGA 3 cut(s) 93, 504, 571
TaqII GACCGA 1 cut(s) 608
TatI WGTACW 4 cut(s) 48, 198, 282, 904
TauI GCSGC 2 cut(s) 114, 302
TfiI GAWTC 5 cut(s) 817, 1051, 1064, 1115, 1174
Tru1I TTAA 1 cut(s) 858
Tru9I TTAA 1 cut(s) 858
TscAI CASTG 2 cut(s) 18, 689
TseFI GTSAC 2 cut(s) 32, 727
TseI GCWGC 4 cut(s) 108, 629, 695, 949
Tsp45I GTSAC 2 cut(s) 32, 727
TspDTI ATGAA 5 cut(s) 17, 68, 197, 229, 843
TspRI CASTG 2 cut(s) 18, 689
VpaK11BI GGWCC 2 cut(s) 177, 722
XapI RAATTY 5 cut(s) 375, 689, 733, 892, 977
XceI RCATGY 1 cut(s) 1111
XcmI CCANNNNNNNNNTGG 1 cut(s) 1186
XmnI GAANNNNTTC 3 cut(s) 75, 188, 1173
XspI CTAG 2 cut(s) 641, 839
ZrmI AGTACT 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.