Lariat debranching
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G31770 AT4G31770 |
| fragaria_vesca | FvH4_2g41360 FvH4_6g29560 |
| malus_domestica | MD08G1051300.v1.1 MD13G1228500.v1.1 MD15G1043800.v1.1 |
| prunus_persica | Prupe.1G397300_v2.0.a1 Prupe.1G397300_v2.0.a1 Prupe.1G397300_v2.0.a1 Prupe.1G397300_v2.0.a1 Prupe.1G397300_v2.0.a1 Prupe.1G397300_v2.0.a1 |
| pyrus_communis | pycom15g04070 |
| rosa_chinensis | RchiOBHm_Chr1g0357361 RchiOBHm_Chr2g0135121 RchiOBHm_Chr6g0299131 |
| rosa_laevigata | RLG00000011460 RLG00000019443 RLG00000028022 |
| rosa_multiflora | Rmu_co8086444.1_g000001 Rmu_sc0001385.1_g000017 Rmu_sc0001434.1_g000018 Rmu_sc0003543.1_g000005 |
| rosa_roxburghii | Rroxscaffold_2G00109470 Rroxscaffold_7G00168980 |
| rosa_rugosa | Rorug01G0256500 Rorug02G0323300 Rorug06G0285600 |
| rosa_samantha | Rh1AG270400 Rh1CG254100 Rh1CG254200 Rh2AG371700 Rh2BG379800 Rh2CG358900 Rh2DG396400 Rh6AG396600 Rh6BG404800 Rh6BG405000 Rh6CG411100 Rh6DG397800 |
| rosa_wichuraiana | Rw0G013580 Rw1G023910 Rw1G023940 Rw6G034720 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 381, 426, 1002 |
| Acc36I | ACCTGC | 1 cut(s) | 634 |
| AccB1I | GGYRCC | 1 cut(s) | 301 |
| AccII | CGCG | 1 cut(s) | 388 |
| AciI | CCGC | 2 cut(s) | 111, 299 |
| AclWI | GGATC | 1 cut(s) | 794 |
| AcsI | RAATTY | 5 cut(s) | 375, 689, 733, 892, 977 |
| AcuI | CTGAAG | 1 cut(s) | 1233 |
| AfaI | GTAC | 5 cut(s) | 50, 173, 200, 284, 906 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 174, 549, 600 |
| AflIII | ACRYGT | 2 cut(s) | 45, 1107 |
| AgeI | ACCGGT | 1 cut(s) | 174 |
| AgsI | TTSAA | 2 cut(s) | 652, 977 |
| AjnI | CCWGG | 6 cut(s) | 36, 612, 760, 802, 1036, 1130 |
| AluBI | AGCT | 5 cut(s) | 153, 260, 674, 949, 992 |
| AluI | AGCT | 5 cut(s) | 153, 260, 674, 949, 992 |
| Alw26I | GTCTC | 3 cut(s) | 384, 584, 1024 |
| AlwI | GGATC | 1 cut(s) | 794 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1081 |
| AoxI | GGCC | 4 cut(s) | 364, 416, 527, 806 |
| ApeKI | GCWGC | 4 cut(s) | 108, 629, 695, 949 |
| ApoI | RAATTY | 5 cut(s) | 375, 689, 733, 892, 977 |
| AsiGI | ACCGGT | 1 cut(s) | 174 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 75, 188, 1173 |
| AspS9I | GGNCC | 3 cut(s) | 177, 722, 806 |
| AsuHPI | GGTGA | 2 cut(s) | 44, 532 |
| AvaII | GGWCC | 2 cut(s) | 177, 722 |
| BaeGI | GKGCMC | 1 cut(s) | 165 |
| BanI | GGYRCC | 1 cut(s) | 301 |
| BanII | GRGCYC | 1 cut(s) | 967 |
| BauI | CACGAG | 1 cut(s) | 699 |
| BbsI | GAAGAC | 2 cut(s) | 749, 1209 |
| BbvI | GCAGC | 4 cut(s) | 95, 616, 682, 936 |
| BccI | CCATC | 3 cut(s) | 713, 1003, 1153 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 551, 585, 908, 942 |
| BciT130I | CCWGG | 6 cut(s) | 38, 614, 762, 804, 1038, 1132 |
| BcoDI | GTCTC | 3 cut(s) | 384, 584, 1024 |
| BfaI | CTAG | 2 cut(s) | 641, 839 |
| BfuAI | ACCTGC | 1 cut(s) | 634 |
| BisI | GCNGC | 6 cut(s) | 109, 112, 300, 630, 696, 950 |
| BlsI | GCNGC | 6 cut(s) | 110, 113, 301, 631, 697, 951 |
| BmcAI | AGTACT | 1 cut(s) | 200 |
| Bme1390I | CCNGG | 6 cut(s) | 38, 614, 762, 804, 1038, 1132 |
| Bme18I | GGWCC | 2 cut(s) | 177, 722 |
| BmgT120I | GGNCC | 3 cut(s) | 177, 722, 806 |
| BmiI | GGNNCC | 4 cut(s) | 303, 498, 724, 964 |
| BmrFI | CCNGG | 6 cut(s) | 38, 614, 762, 804, 1038, 1132 |
| BmsI | GCATC | 2 cut(s) | 546, 1216 |
| BpiI | GAAGAC | 2 cut(s) | 749, 1209 |
| BpmI | CTGGAG | 3 cut(s) | 44, 59, 1242 |
| BpuEI | CTTGAG | 1 cut(s) | 175 |
| Bsa29I | ATCGAT | 1 cut(s) | 504 |
| BsaI | GGTCTC | 1 cut(s) | 584 |
| BsaJI | CCNNGG | 4 cut(s) | 594, 612, 613, 803 |
| BsaWI | WCCGGW | 1 cut(s) | 174 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 32, 62 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 174, 549, 600 |
| Bse118I | RCCGGY | 1 cut(s) | 174 |
| Bse1I | ACTGG | 1 cut(s) | 560 |
| BseBI | CCWGG | 6 cut(s) | 38, 614, 762, 804, 1038, 1132 |
| BseCI | ATCGAT | 1 cut(s) | 504 |
| BseDI | CCNNGG | 4 cut(s) | 594, 612, 613, 803 |
| BseGI | GGATG | 2 cut(s) | 26, 1198 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 174, 549, 600 |
| BseMII | CTCAG | 1 cut(s) | 810 |
| BseNI | ACTGG | 1 cut(s) | 560 |
| BseRI | GAGGAG | 4 cut(s) | 89, 92, 227, 975 |
| BseSI | GKGCMC | 1 cut(s) | 165 |
| BseXI | GCAGC | 4 cut(s) | 95, 616, 682, 936 |
| BseYI | CCCAGC | 1 cut(s) | 329 |
| Bsh1236I | CGCG | 1 cut(s) | 388 |
| BshFI | GGCC | 4 cut(s) | 366, 418, 529, 808 |
| BshNI | GGYRCC | 1 cut(s) | 301 |
| BshTI | ACCGGT | 1 cut(s) | 174 |
| BshVI | ATCGAT | 1 cut(s) | 504 |
| BsiSI | CCGG | 2 cut(s) | 175, 207 |
| BslFI | GGGAC | 2 cut(s) | 566, 708 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 174, 549, 600 |
| BsmAI | GTCTC | 3 cut(s) | 384, 584, 1024 |
| BsmFI | GGGAC | 2 cut(s) | 566, 708 |
| BsnI | GGCC | 4 cut(s) | 366, 418, 529, 808 |
| Bso31I | GGTCTC | 1 cut(s) | 584 |
| Bsp1286I | GDGCHC | 2 cut(s) | 165, 967 |
| Bsp1407I | TGTACA | 2 cut(s) | 48, 904 |
| Bsp143I | GATC | 2 cut(s) | 216, 799 |
| Bsp68I | TCGCGA | 1 cut(s) | 388 |
| BspACI | CCGC | 2 cut(s) | 111, 299 |
| BspANI | GGCC | 4 cut(s) | 366, 418, 529, 808 |
| BspCNI | CTCAG | 1 cut(s) | 809 |
| BspDI | ATCGAT | 1 cut(s) | 504 |
| BspFNI | CGCG | 1 cut(s) | 388 |
| BspLI | GGNNCC | 4 cut(s) | 303, 498, 724, 964 |
| BspMI | ACCTGC | 1 cut(s) | 634 |
| BspPI | GGATC | 1 cut(s) | 794 |
| BspT107I | GGYRCC | 1 cut(s) | 301 |
| BspTNI | GGTCTC | 1 cut(s) | 584 |
| BsrFI | RCCGGY | 1 cut(s) | 174 |
| BsrGI | TGTACA | 2 cut(s) | 48, 904 |
| BsrI | ACTGG | 1 cut(s) | 560 |
| BssAI | RCCGGY | 1 cut(s) | 174 |
| BssECI | CCNNGG | 4 cut(s) | 594, 612, 613, 803 |
| BssMI | GATC | 2 cut(s) | 216, 799 |
| BssSI | CACGAG | 1 cut(s) | 699 |
| Bst2BI | CACGAG | 1 cut(s) | 699 |
| Bst2UI | CCWGG | 6 cut(s) | 38, 614, 762, 804, 1038, 1132 |
| Bst4CI | ACNGT | 4 cut(s) | 32, 282, 290, 439 |
| Bst6I | CTCTTC | 2 cut(s) | 1164, 1209 |
| BstAUI | TGTACA | 2 cut(s) | 48, 904 |
| BstC8I | GCNNGC | 1 cut(s) | 954 |
| BstDEI | CTNAG | 1 cut(s) | 796 |
| BstEII | GGTNACC | 1 cut(s) | 32 |
| BstF5I | GGATG | 2 cut(s) | 26, 1198 |
| BstFNI | CGCG | 1 cut(s) | 388 |
| BstKTI | GATC | 2 cut(s) | 219, 802 |
| BstMAI | GTCTC | 3 cut(s) | 384, 584, 1024 |
| BstMBI | GATC | 2 cut(s) | 216, 799 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 363, 962, 1217, 1226 |
| BstNI | CCWGG | 6 cut(s) | 38, 614, 762, 804, 1038, 1132 |
| BstNSI | RCATGY | 1 cut(s) | 1111 |
| BstPI | GGTNACC | 1 cut(s) | 32 |
| BstSCI | CCNGG | 6 cut(s) | 36, 612, 760, 802, 1036, 1130 |
| BstSLI | GKGCMC | 1 cut(s) | 165 |
| BstUI | CGCG | 1 cut(s) | 388 |
| BstV1I | GCAGC | 4 cut(s) | 95, 616, 682, 936 |
| BstV2I | GAAGAC | 2 cut(s) | 749, 1209 |
| BstX2I | RGATCY | 1 cut(s) | 799 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 663 |
| BstYI | RGATCY | 1 cut(s) | 799 |
| Bsu15I | ATCGAT | 1 cut(s) | 504 |
| BsuRI | GGCC | 4 cut(s) | 366, 418, 529, 808 |
| BsuTUI | ATCGAT | 1 cut(s) | 504 |
| BtsCI | GGATG | 2 cut(s) | 26, 1198 |
| BtsI | GCAGTG | 2 cut(s) | 18, 682 |
| BtsIMutI | CAGTG | 2 cut(s) | 18, 682 |
| BtuMI | TCGCGA | 1 cut(s) | 388 |
| BveI | ACCTGC | 1 cut(s) | 634 |
| Cac8I | GCNNGC | 1 cut(s) | 954 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1081 |
| Cfr10I | RCCGGY | 1 cut(s) | 174 |
| Cfr13I | GGNCC | 3 cut(s) | 177, 722, 806 |
| ClaI | ATCGAT | 1 cut(s) | 504 |
| Csp6I | GTAC | 5 cut(s) | 49, 172, 199, 283, 905 |
| CspAI | ACCGGT | 1 cut(s) | 174 |
| CviAII | CATG | 7 cut(s) | 181, 455, 484, 521, 710, 1108, 1235 |
| CviQI | GTAC | 5 cut(s) | 49, 172, 199, 283, 905 |
| DdeI | CTNAG | 1 cut(s) | 796 |
| DpnI | GATC | 2 cut(s) | 218, 801 |
| DpnII | GATC | 2 cut(s) | 216, 799 |
| Eam1104I | CTCTTC | 2 cut(s) | 1164, 1209 |
| EarI | CTCTTC | 2 cut(s) | 1164, 1209 |
| Eco147I | AGGCCT | 1 cut(s) | 418 |
| Eco24I | GRGCYC | 1 cut(s) | 967 |
| Eco31I | GGTCTC | 1 cut(s) | 584 |
| Eco47I | GGWCC | 2 cut(s) | 177, 722 |
| Eco57I | CTGAAG | 1 cut(s) | 1233 |
| Eco91I | GGTNACC | 1 cut(s) | 32 |
| EcoO65I | GGTNACC | 1 cut(s) | 32 |
| EcoRI | GAATTC | 1 cut(s) | 977 |
| EcoRII | CCWGG | 6 cut(s) | 36, 612, 760, 802, 1036, 1130 |
| EcoT38I | GRGCYC | 1 cut(s) | 967 |
| FaeI | CATG | 7 cut(s) | 184, 458, 487, 524, 713, 1111, 1238 |
| FaqI | GGGAC | 2 cut(s) | 566, 708 |
| FatI | CATG | 7 cut(s) | 180, 454, 483, 520, 709, 1107, 1234 |
| Fnu4HI | GCNGC | 6 cut(s) | 109, 112, 300, 630, 696, 950 |
| FokI | GGATG | 2 cut(s) | 33, 1205 |
| FriOI | GRGCYC | 1 cut(s) | 967 |
| Fsp4HI | GCNGC | 6 cut(s) | 109, 112, 300, 630, 696, 950 |
| FspBI | CTAG | 2 cut(s) | 641, 839 |
| GluI | GCNGC | 6 cut(s) | 109, 112, 300, 630, 696, 950 |
| GsaI | CCCAGC | 1 cut(s) | 333 |
| GsuI | CTGGAG | 3 cut(s) | 44, 59, 1242 |
| HaeIII | GGCC | 4 cut(s) | 366, 418, 529, 808 |
| HapII | CCGG | 2 cut(s) | 175, 207 |
| Hin1II | CATG | 7 cut(s) | 184, 458, 487, 524, 713, 1111, 1238 |
| HindIII | AAGCTT | 1 cut(s) | 258 |
| HinfI | GANTC | 7 cut(s) | 794, 817, 1051, 1064, 1115, 1135, 1174 |
| HpaII | CCGG | 2 cut(s) | 175, 207 |
| HphI | GGTGA | 2 cut(s) | 44, 532 |
| Hpy166II | GTNNAC | 4 cut(s) | 49, 475, 623, 905 |
| Hpy188I | TCNGA | 6 cut(s) | 347, 799, 852, 1050, 1114, 1123 |
| Hpy8I | GTNNAC | 4 cut(s) | 49, 475, 623, 905 |
| HpyAV | CCTTC | 4 cut(s) | 11, 133, 199, 362 |
| HpyCH4III | ACNGT | 4 cut(s) | 32, 282, 290, 439 |
| HpyCH4IV | ACGT | 1 cut(s) | 45 |
| HpyCH4V | TGCA | 8 cut(s) | 11, 28, 431, 487, 687, 890, 952, 1075 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 363, 962, 1217, 1226 |
| HpyF3I | CTNAG | 1 cut(s) | 796 |
| HpySE526I | ACGT | 1 cut(s) | 45 |
| Hsp92II | CATG | 7 cut(s) | 184, 458, 487, 524, 713, 1111, 1238 |
| Kzo9I | GATC | 2 cut(s) | 216, 799 |
| LmnI | GCTCC | 3 cut(s) | 226, 962, 997 |
| Lsp1109I | GCAGC | 4 cut(s) | 95, 616, 682, 936 |
| LweI | GCATC | 2 cut(s) | 546, 1216 |
| MaeI | CTAG | 2 cut(s) | 641, 839 |
| MaeII | ACGT | 1 cut(s) | 45 |
| MaeIII | GTNAC | 2 cut(s) | 32, 727 |
| MalI | GATC | 2 cut(s) | 218, 801 |
| MboI | GATC | 2 cut(s) | 216, 799 |
| MboII | GAAGA | 8 cut(s) | 728, 749, 842, 1088, 1110, 1181, 1214, 1226 |
| MfeI | CAATTG | 1 cut(s) | 635 |
| MflI | RGATCY | 1 cut(s) | 799 |
| MhlI | GDGCHC | 2 cut(s) | 165, 967 |
| MlyI | GAGTC | 2 cut(s) | 788, 1144 |
| MroXI | GAANNNNTTC | 3 cut(s) | 75, 188, 1173 |
| MseI | TTAA | 1 cut(s) | 858 |
| MslI | CAYNNNNRTG | 2 cut(s) | 459, 1239 |
| MspI | CCGG | 2 cut(s) | 175, 207 |
| MspR9I | CCNGG | 6 cut(s) | 38, 614, 762, 804, 1038, 1132 |
| MunI | CAATTG | 1 cut(s) | 635 |
| MvaI | CCWGG | 6 cut(s) | 38, 614, 762, 804, 1038, 1132 |
| MvnI | CGCG | 1 cut(s) | 388 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 363, 962, 1217, 1226 |
| NdeII | GATC | 2 cut(s) | 216, 799 |
| NlaIII | CATG | 7 cut(s) | 184, 458, 487, 524, 713, 1111, 1238 |
| NlaIV | GGNNCC | 4 cut(s) | 303, 498, 724, 964 |
| NmuCI | GTSAC | 2 cut(s) | 32, 727 |
| NruI | TCGCGA | 1 cut(s) | 388 |
| NspI | RCATGY | 1 cut(s) | 1111 |
| PasI | CCCWGGG | 1 cut(s) | 613 |
| PceI | AGGCCT | 1 cut(s) | 418 |
| PciI | ACATGT | 1 cut(s) | 1107 |
| PdmI | GAANNNNTTC | 3 cut(s) | 75, 188, 1173 |
| PfeI | GAWTC | 5 cut(s) | 817, 1051, 1064, 1115, 1174 |
| PfoI | TCCNGGA | 2 cut(s) | 760, 1130 |
| PinAI | ACCGGT | 1 cut(s) | 174 |
| PkrI | GCNGC | 6 cut(s) | 110, 113, 301, 631, 697, 951 |
| PleI | GAGTC | 2 cut(s) | 788, 1143 |
| PpsI | GAGTC | 2 cut(s) | 788, 1143 |
| PscI | ACATGT | 1 cut(s) | 1107 |
| PsiI | TTATAA | 3 cut(s) | 381, 426, 1002 |
| Psp6I | CCWGG | 6 cut(s) | 36, 612, 760, 802, 1036, 1130 |
| PspEI | GGTNACC | 1 cut(s) | 32 |
| PspFI | CCCAGC | 1 cut(s) | 329 |
| PspGI | CCWGG | 6 cut(s) | 36, 612, 760, 802, 1036, 1130 |
| PspN4I | GGNNCC | 4 cut(s) | 303, 498, 724, 964 |
| PspPI | GGNCC | 3 cut(s) | 177, 722, 806 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 441, 473 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1081 |
| PsuI | RGATCY | 1 cut(s) | 799 |
| RruI | TCGCGA | 1 cut(s) | 388 |
| RsaI | GTAC | 5 cut(s) | 50, 173, 200, 284, 906 |
| RsaNI | GTAC | 5 cut(s) | 49, 172, 199, 283, 905 |
| RseI | CAYNNNNRTG | 2 cut(s) | 459, 1239 |
| SaqAI | TTAA | 1 cut(s) | 858 |
| SatI | GCNGC | 6 cut(s) | 109, 112, 300, 630, 696, 950 |
| Sau3AI | GATC | 2 cut(s) | 216, 799 |
| Sau96I | GGNCC | 3 cut(s) | 177, 722, 806 |
| ScaI | AGTACT | 1 cut(s) | 200 |
| SchI | GAGTC | 2 cut(s) | 788, 1144 |
| ScrFI | CCNGG | 6 cut(s) | 38, 614, 762, 804, 1038, 1132 |
| SduI | GDGCHC | 2 cut(s) | 165, 967 |
| SfaNI | GCATC | 2 cut(s) | 546, 1216 |
| SinI | GGWCC | 2 cut(s) | 177, 722 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 459, 1239 |
| SmlI | CTYRAG | 1 cut(s) | 154 |
| SmoI | CTYRAG | 1 cut(s) | 154 |
| SseBI | AGGCCT | 1 cut(s) | 418 |
| SsiI | CCGC | 2 cut(s) | 111, 299 |
| SspMI | CTAG | 2 cut(s) | 641, 839 |
| StuI | AGGCCT | 1 cut(s) | 418 |
| StyD4I | CCNGG | 6 cut(s) | 36, 612, 760, 802, 1036, 1130 |
| TaaI | ACNGT | 4 cut(s) | 32, 282, 290, 439 |
| TaiI | ACGT | 1 cut(s) | 48 |
| TaqI | TCGA | 3 cut(s) | 93, 504, 571 |
| TaqII | GACCGA | 1 cut(s) | 608 |
| TatI | WGTACW | 4 cut(s) | 48, 198, 282, 904 |
| TauI | GCSGC | 2 cut(s) | 114, 302 |
| TfiI | GAWTC | 5 cut(s) | 817, 1051, 1064, 1115, 1174 |
| Tru1I | TTAA | 1 cut(s) | 858 |
| Tru9I | TTAA | 1 cut(s) | 858 |
| TscAI | CASTG | 2 cut(s) | 18, 689 |
| TseFI | GTSAC | 2 cut(s) | 32, 727 |
| TseI | GCWGC | 4 cut(s) | 108, 629, 695, 949 |
| Tsp45I | GTSAC | 2 cut(s) | 32, 727 |
| TspDTI | ATGAA | 5 cut(s) | 17, 68, 197, 229, 843 |
| TspRI | CASTG | 2 cut(s) | 18, 689 |
| VpaK11BI | GGWCC | 2 cut(s) | 177, 722 |
| XapI | RAATTY | 5 cut(s) | 375, 689, 733, 892, 977 |
| XceI | RCATGY | 1 cut(s) | 1111 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1186 |
| XmnI | GAANNNNTTC | 3 cut(s) | 75, 188, 1173 |
| XspI | CTAG | 2 cut(s) | 641, 839 |
| ZrmI | AGTACT | 1 cut(s) | 200 |