Lariat debranching
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G31770 AT4G31770 |
| fragaria_vesca | FvH4_2g41360 FvH4_6g29560 |
| malus_domestica | MD08G1051300.v1.1 MD13G1228500.v1.1 MD15G1043800.v1.1 |
| prunus_persica | Prupe.1G397300_v2.0.a1 Prupe.1G397300_v2.0.a1 Prupe.1G397300_v2.0.a1 Prupe.1G397300_v2.0.a1 Prupe.1G397300_v2.0.a1 Prupe.1G397300_v2.0.a1 |
| pyrus_communis | pycom15g04070 |
| rosa_chinensis | RchiOBHm_Chr1g0357361 RchiOBHm_Chr2g0135121 RchiOBHm_Chr6g0299131 |
| rosa_laevigata | RLG00000011460 RLG00000019443 RLG00000028022 |
| rosa_multiflora | Rmu_co8086444.1_g000001 Rmu_sc0001385.1_g000017 Rmu_sc0001434.1_g000018 Rmu_sc0003543.1_g000005 |
| rosa_roxburghii | Rroxscaffold_2G00109470 Rroxscaffold_7G00168980 |
| rosa_rugosa | Rorug01G0256500 Rorug02G0323300 Rorug06G0285600 |
| rosa_samantha | Rh1AG270400 Rh1CG254100 Rh1CG254200 Rh2AG371700 Rh2BG379800 Rh2CG358900 Rh2DG396400 Rh6AG396600 Rh6BG404800 Rh6BG405000 Rh6CG411100 Rh6DG397800 |
| rosa_wichuraiana | Rw0G013580 Rw1G023910 Rw1G023940 Rw6G034720 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 567, 612, 1188 |
| Acc36I | ACCTGC | 2 cut(s) | 820, 955 |
| AccB1I | GGYRCC | 2 cut(s) | 487, 1148 |
| AccI | GTMKAC | 1 cut(s) | 1229 |
| AccII | CGCG | 1 cut(s) | 574 |
| AciI | CCGC | 2 cut(s) | 297, 485 |
| AcsI | RAATTY | 5 cut(s) | 561, 875, 919, 1078, 1163 |
| AcuI | CTGAAG | 2 cut(s) | 1290, 1419 |
| AfaI | GTAC | 6 cut(s) | 236, 359, 386, 470, 998, 1092 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 64, 735, 1224 |
| AflIII | ACRYGT | 2 cut(s) | 231, 1293 |
| AgsI | TTSAA | 2 cut(s) | 838, 1163 |
| AjnI | CCWGG | 6 cut(s) | 222, 798, 946, 988, 1222, 1316 |
| AluBI | AGCT | 5 cut(s) | 339, 446, 860, 1135, 1178 |
| AluI | AGCT | 5 cut(s) | 339, 446, 860, 1135, 1178 |
| Alw26I | GTCTC | 3 cut(s) | 570, 770, 1210 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1267 |
| AoxI | GGCC | 7 cut(s) | 55, 67, 95, 550, 602, 713, 992 |
| ApeKI | GCWGC | 3 cut(s) | 294, 815, 881 |
| ApoI | RAATTY | 5 cut(s) | 561, 875, 919, 1078, 1163 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 89, 261, 374, 1359 |
| AspS9I | GGNCC | 3 cut(s) | 67, 908, 992 |
| AsuHPI | GGTGA | 2 cut(s) | 230, 718 |
| AvaII | GGWCC | 1 cut(s) | 908 |
| AxyI | CCTNAGG | 1 cut(s) | 52 |
| BaeGI | GKGCMC | 2 cut(s) | 351, 1153 |
| BanI | GGYRCC | 2 cut(s) | 487, 1148 |
| BanII | GRGCYC | 1 cut(s) | 50 |
| BauI | CACGAG | 1 cut(s) | 885 |
| BbsI | GAAGAC | 2 cut(s) | 935, 1395 |
| BbvI | GCAGC | 3 cut(s) | 281, 802, 868 |
| BccI | CCATC | 3 cut(s) | 899, 1189, 1339 |
| BceAI | ACGGC | 1 cut(s) | 979 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 737, 771, 1094, 1128 |
| BciT130I | CCWGG | 6 cut(s) | 224, 800, 948, 990, 1224, 1318 |
| BciVI | GTATCC | 1 cut(s) | 1324 |
| BcoDI | GTCTC | 3 cut(s) | 570, 770, 1210 |
| BfaI | CTAG | 2 cut(s) | 827, 1025 |
| BfuAI | ACCTGC | 2 cut(s) | 820, 955 |
| BfuI | GTATCC | 1 cut(s) | 1324 |
| BisI | GCNGC | 5 cut(s) | 295, 298, 486, 816, 882 |
| BlsI | GCNGC | 5 cut(s) | 296, 299, 487, 817, 883 |
| BmcAI | AGTACT | 1 cut(s) | 386 |
| Bme1390I | CCNGG | 6 cut(s) | 224, 800, 948, 990, 1224, 1318 |
| Bme18I | GGWCC | 1 cut(s) | 908 |
| BmgT120I | GGNCC | 3 cut(s) | 67, 908, 992 |
| BmiI | GGNNCC | 6 cut(s) | 49, 489, 684, 910, 1150, 1216 |
| BmrFI | CCNGG | 6 cut(s) | 224, 800, 948, 990, 1224, 1318 |
| BmrI | ACTGGG | 1 cut(s) | 178 |
| BmsI | GCATC | 2 cut(s) | 732, 1402 |
| BmuI | ACTGGG | 1 cut(s) | 178 |
| BpiI | GAAGAC | 2 cut(s) | 935, 1395 |
| BpmI | CTGGAG | 2 cut(s) | 245, 1428 |
| BpuEI | CTTGAG | 1 cut(s) | 361 |
| BsaJI | CCNNGG | 4 cut(s) | 798, 799, 989, 1223 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 218, 248 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 64, 735, 1224 |
| Bse118I | RCCGGY | 1 cut(s) | 392 |
| Bse1I | ACTGG | 4 cut(s) | 86, 173, 686, 746 |
| Bse21I | CCTNAGG | 1 cut(s) | 52 |
| BseBI | CCWGG | 6 cut(s) | 224, 800, 948, 990, 1224, 1318 |
| BseDI | CCNNGG | 4 cut(s) | 798, 799, 989, 1223 |
| BseGI | GGATG | 1 cut(s) | 1384 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 64, 735, 1224 |
| BseMII | CTCAG | 3 cut(s) | 66, 771, 996 |
| BseNI | ACTGG | 4 cut(s) | 86, 173, 686, 746 |
| BseRI | GAGGAG | 4 cut(s) | 40, 275, 278, 413 |
| BseSI | GKGCMC | 2 cut(s) | 351, 1153 |
| BseXI | GCAGC | 3 cut(s) | 281, 802, 868 |
| BseYI | CCCAGC | 1 cut(s) | 515 |
| Bsh1236I | CGCG | 1 cut(s) | 574 |
| BshFI | GGCC | 7 cut(s) | 57, 69, 97, 552, 604, 715, 994 |
| BshNI | GGYRCC | 2 cut(s) | 487, 1148 |
| BsiSI | CCGG | 2 cut(s) | 70, 393 |
| BsiWI | CGTACG | 1 cut(s) | 996 |
| BslFI | GGGAC | 2 cut(s) | 752, 894 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 64, 735, 1224 |
| BsmAI | GTCTC | 3 cut(s) | 570, 770, 1210 |
| BsmFI | GGGAC | 2 cut(s) | 752, 894 |
| BsnI | GGCC | 7 cut(s) | 57, 69, 97, 552, 604, 715, 994 |
| Bsp1286I | GDGCHC | 3 cut(s) | 50, 351, 1153 |
| Bsp1407I | TGTACA | 2 cut(s) | 234, 1090 |
| Bsp143I | GATC | 2 cut(s) | 62, 402 |
| Bsp68I | TCGCGA | 1 cut(s) | 574 |
| BspACI | CCGC | 2 cut(s) | 297, 485 |
| BspANI | GGCC | 7 cut(s) | 57, 69, 97, 552, 604, 715, 994 |
| BspCNI | CTCAG | 3 cut(s) | 65, 772, 995 |
| BspFNI | CGCG | 1 cut(s) | 574 |
| BspLI | GGNNCC | 6 cut(s) | 49, 489, 684, 910, 1150, 1216 |
| BspMI | ACCTGC | 2 cut(s) | 820, 955 |
| BspT107I | GGYRCC | 2 cut(s) | 487, 1148 |
| BsrFI | RCCGGY | 1 cut(s) | 392 |
| BsrGI | TGTACA | 2 cut(s) | 234, 1090 |
| BsrI | ACTGG | 4 cut(s) | 86, 173, 686, 746 |
| BssAI | RCCGGY | 1 cut(s) | 392 |
| BssECI | CCNNGG | 4 cut(s) | 798, 799, 989, 1223 |
| BssMI | GATC | 2 cut(s) | 62, 402 |
| BssNAI | GTATAC | 1 cut(s) | 1230 |
| BssSI | CACGAG | 1 cut(s) | 885 |
| Bst1107I | GTATAC | 1 cut(s) | 1230 |
| Bst2BI | CACGAG | 1 cut(s) | 885 |
| Bst2UI | CCWGG | 6 cut(s) | 224, 800, 948, 990, 1224, 1318 |
| Bst4CI | ACNGT | 5 cut(s) | 218, 362, 468, 476, 625 |
| Bst6I | CTCTTC | 2 cut(s) | 1350, 1395 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1148 |
| BstAUI | TGTACA | 2 cut(s) | 234, 1090 |
| BstC8I | GCNNGC | 1 cut(s) | 394 |
| BstDEI | CTNAG | 3 cut(s) | 52, 780, 982 |
| BstEII | GGTNACC | 1 cut(s) | 218 |
| BstF5I | GGATG | 1 cut(s) | 1384 |
| BstFNI | CGCG | 1 cut(s) | 574 |
| BstKTI | GATC | 2 cut(s) | 65, 405 |
| BstMAI | GTCTC | 3 cut(s) | 570, 770, 1210 |
| BstMBI | GATC | 2 cut(s) | 62, 402 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 54, 549, 1148, 1403, 1412 |
| BstNI | CCWGG | 6 cut(s) | 224, 800, 948, 990, 1224, 1318 |
| BstNSI | RCATGY | 1 cut(s) | 1297 |
| BstPI | GGTNACC | 1 cut(s) | 218 |
| BstSCI | CCNGG | 6 cut(s) | 222, 798, 946, 988, 1222, 1316 |
| BstSLI | GKGCMC | 2 cut(s) | 351, 1153 |
| BstUI | CGCG | 1 cut(s) | 574 |
| BstV1I | GCAGC | 3 cut(s) | 281, 802, 868 |
| BstV2I | GAAGAC | 2 cut(s) | 935, 1395 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 849 |
| BstZ17I | GTATAC | 1 cut(s) | 1230 |
| Bsu36I | CCTNAGG | 1 cut(s) | 52 |
| BsuI | GTATCC | 1 cut(s) | 1324 |
| BsuRI | GGCC | 7 cut(s) | 57, 69, 97, 552, 604, 715, 994 |
| BtsCI | GGATG | 1 cut(s) | 1384 |
| BtsI | GCAGTG | 2 cut(s) | 204, 868 |
| BtsIMutI | CAGTG | 2 cut(s) | 204, 868 |
| BtuMI | TCGCGA | 1 cut(s) | 574 |
| BveI | ACCTGC | 2 cut(s) | 820, 955 |
| Cac8I | GCNNGC | 1 cut(s) | 394 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1267 |
| Cfr10I | RCCGGY | 1 cut(s) | 392 |
| Cfr13I | GGNCC | 3 cut(s) | 67, 908, 992 |
| Csp6I | GTAC | 6 cut(s) | 235, 358, 385, 469, 997, 1091 |
| CviAII | CATG | 7 cut(s) | 367, 641, 670, 707, 896, 1294, 1421 |
| CviQI | GTAC | 6 cut(s) | 235, 358, 385, 469, 997, 1091 |
| DdeI | CTNAG | 3 cut(s) | 52, 780, 982 |
| DpnI | GATC | 2 cut(s) | 64, 404 |
| DpnII | GATC | 2 cut(s) | 62, 402 |
| Eam1104I | CTCTTC | 2 cut(s) | 1350, 1395 |
| EarI | CTCTTC | 2 cut(s) | 1350, 1395 |
| Eco147I | AGGCCT | 1 cut(s) | 604 |
| Eco24I | GRGCYC | 1 cut(s) | 50 |
| Eco47I | GGWCC | 1 cut(s) | 908 |
| Eco57I | CTGAAG | 2 cut(s) | 1290, 1419 |
| Eco81I | CCTNAGG | 1 cut(s) | 52 |
| Eco91I | GGTNACC | 1 cut(s) | 218 |
| EcoO65I | GGTNACC | 1 cut(s) | 218 |
| EcoRI | GAATTC | 1 cut(s) | 1163 |
| EcoRII | CCWGG | 6 cut(s) | 222, 798, 946, 988, 1222, 1316 |
| EcoT38I | GRGCYC | 1 cut(s) | 50 |
| FaeI | CATG | 7 cut(s) | 370, 644, 673, 710, 899, 1297, 1424 |
| FaqI | GGGAC | 2 cut(s) | 752, 894 |
| FatI | CATG | 7 cut(s) | 366, 640, 669, 706, 895, 1293, 1420 |
| FblI | GTMKAC | 1 cut(s) | 1229 |
| Fnu4HI | GCNGC | 5 cut(s) | 295, 298, 486, 816, 882 |
| FokI | GGATG | 1 cut(s) | 1391 |
| FriOI | GRGCYC | 1 cut(s) | 50 |
| Fsp4HI | GCNGC | 5 cut(s) | 295, 298, 486, 816, 882 |
| FspBI | CTAG | 2 cut(s) | 827, 1025 |
| GluI | GCNGC | 5 cut(s) | 295, 298, 486, 816, 882 |
| GsaI | CCCAGC | 1 cut(s) | 519 |
| GsuI | CTGGAG | 2 cut(s) | 245, 1428 |
| HaeIII | GGCC | 7 cut(s) | 57, 69, 97, 552, 604, 715, 994 |
| HapII | CCGG | 2 cut(s) | 70, 393 |
| Hin1II | CATG | 7 cut(s) | 370, 644, 673, 710, 899, 1297, 1424 |
| HindIII | AAGCTT | 1 cut(s) | 444 |
| HinfI | GANTC | 7 cut(s) | 980, 1003, 1237, 1250, 1301, 1321, 1360 |
| HpaII | CCGG | 2 cut(s) | 70, 393 |
| HphI | GGTGA | 2 cut(s) | 230, 718 |
| Hpy166II | GTNNAC | 6 cut(s) | 235, 265, 661, 809, 1091, 1230 |
| Hpy188I | TCNGA | 6 cut(s) | 533, 985, 1038, 1236, 1300, 1309 |
| Hpy8I | GTNNAC | 6 cut(s) | 235, 265, 661, 809, 1091, 1230 |
| HpyAV | CCTTC | 4 cut(s) | 197, 319, 385, 548 |
| HpyCH4III | ACNGT | 5 cut(s) | 218, 362, 468, 476, 625 |
| HpyCH4IV | ACGT | 1 cut(s) | 231 |
| HpyCH4V | TGCA | 8 cut(s) | 197, 214, 617, 673, 873, 964, 1076, 1261 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 54, 549, 1148, 1403, 1412 |
| HpyF3I | CTNAG | 3 cut(s) | 52, 780, 982 |
| HpySE526I | ACGT | 1 cut(s) | 231 |
| Hsp92II | CATG | 7 cut(s) | 370, 644, 673, 710, 899, 1297, 1424 |
| KroI | GCCGGC | 1 cut(s) | 392 |
| KroNI | GCCGGC | 1 cut(s) | 394 |
| Kzo9I | GATC | 2 cut(s) | 62, 402 |
| LmnI | GCTCC | 3 cut(s) | 53, 412, 1183 |
| Lsp1109I | GCAGC | 3 cut(s) | 281, 802, 868 |
| LweI | GCATC | 2 cut(s) | 732, 1402 |
| MaeI | CTAG | 2 cut(s) | 827, 1025 |
| MaeII | ACGT | 1 cut(s) | 231 |
| MaeIII | GTNAC | 2 cut(s) | 218, 913 |
| MalI | GATC | 2 cut(s) | 64, 404 |
| MboI | GATC | 2 cut(s) | 62, 402 |
| MboII | GAAGA | 8 cut(s) | 914, 935, 1028, 1274, 1296, 1367, 1400, 1412 |
| MfeI | CAATTG | 1 cut(s) | 821 |
| MhlI | GDGCHC | 3 cut(s) | 50, 351, 1153 |
| MlyI | GAGTC | 2 cut(s) | 974, 1330 |
| MmeI | TCCRAC | 3 cut(s) | 86, 271, 1365 |
| MroNI | GCCGGC | 1 cut(s) | 392 |
| MroXI | GAANNNNTTC | 4 cut(s) | 89, 261, 374, 1359 |
| MseI | TTAA | 2 cut(s) | 141, 1044 |
| MslI | CAYNNNNRTG | 3 cut(s) | 130, 645, 1425 |
| MspI | CCGG | 2 cut(s) | 70, 393 |
| MspR9I | CCNGG | 6 cut(s) | 224, 800, 948, 990, 1224, 1318 |
| MunI | CAATTG | 1 cut(s) | 821 |
| MvaI | CCWGG | 6 cut(s) | 224, 800, 948, 990, 1224, 1318 |
| MvnI | CGCG | 1 cut(s) | 574 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 54, 549, 1148, 1403, 1412 |
| NaeI | GCCGGC | 1 cut(s) | 394 |
| NdeII | GATC | 2 cut(s) | 62, 402 |
| NgoMIV | GCCGGC | 1 cut(s) | 392 |
| NlaIII | CATG | 7 cut(s) | 370, 644, 673, 710, 899, 1297, 1424 |
| NlaIV | GGNNCC | 6 cut(s) | 49, 489, 684, 910, 1150, 1216 |
| NmuCI | GTSAC | 2 cut(s) | 218, 913 |
| NruI | TCGCGA | 1 cut(s) | 574 |
| NspI | RCATGY | 1 cut(s) | 1297 |
| PasI | CCCWGGG | 1 cut(s) | 799 |
| PceI | AGGCCT | 1 cut(s) | 604 |
| PciI | ACATGT | 1 cut(s) | 1293 |
| PdiI | GCCGGC | 1 cut(s) | 394 |
| PdmI | GAANNNNTTC | 4 cut(s) | 89, 261, 374, 1359 |
| PfeI | GAWTC | 5 cut(s) | 1003, 1237, 1250, 1301, 1360 |
| Pfl23II | CGTACG | 1 cut(s) | 996 |
| PfoI | TCCNGGA | 2 cut(s) | 946, 1316 |
| PkrI | GCNGC | 5 cut(s) | 296, 299, 487, 817, 883 |
| PleI | GAGTC | 2 cut(s) | 974, 1329 |
| PpsI | GAGTC | 2 cut(s) | 974, 1329 |
| PscI | ACATGT | 1 cut(s) | 1293 |
| PsiI | TTATAA | 3 cut(s) | 567, 612, 1188 |
| Psp6I | CCWGG | 6 cut(s) | 222, 798, 946, 988, 1222, 1316 |
| PspEI | GGTNACC | 1 cut(s) | 218 |
| PspFI | CCCAGC | 1 cut(s) | 515 |
| PspGI | CCWGG | 6 cut(s) | 222, 798, 946, 988, 1222, 1316 |
| PspLI | CGTACG | 1 cut(s) | 996 |
| PspN4I | GGNNCC | 6 cut(s) | 49, 489, 684, 910, 1150, 1216 |
| PspPI | GGNCC | 3 cut(s) | 67, 908, 992 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 627, 659 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1267 |
| RruI | TCGCGA | 1 cut(s) | 574 |
| RsaI | GTAC | 6 cut(s) | 236, 359, 386, 470, 998, 1092 |
| RsaNI | GTAC | 6 cut(s) | 235, 358, 385, 469, 997, 1091 |
| RseI | CAYNNNNRTG | 3 cut(s) | 130, 645, 1425 |
| SaqAI | TTAA | 2 cut(s) | 141, 1044 |
| SatI | GCNGC | 5 cut(s) | 295, 298, 486, 816, 882 |
| Sau3AI | GATC | 2 cut(s) | 62, 402 |
| Sau96I | GGNCC | 3 cut(s) | 67, 908, 992 |
| ScaI | AGTACT | 1 cut(s) | 386 |
| SchI | GAGTC | 2 cut(s) | 974, 1330 |
| ScrFI | CCNGG | 6 cut(s) | 224, 800, 948, 990, 1224, 1318 |
| SduI | GDGCHC | 3 cut(s) | 50, 351, 1153 |
| SfaNI | GCATC | 2 cut(s) | 732, 1402 |
| SinI | GGWCC | 1 cut(s) | 908 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 130, 645, 1425 |
| SmlI | CTYRAG | 1 cut(s) | 340 |
| SmoI | CTYRAG | 1 cut(s) | 340 |
| SseBI | AGGCCT | 1 cut(s) | 604 |
| SsiI | CCGC | 2 cut(s) | 297, 485 |
| SspMI | CTAG | 2 cut(s) | 827, 1025 |
| StuI | AGGCCT | 1 cut(s) | 604 |
| StyD4I | CCNGG | 6 cut(s) | 222, 798, 946, 988, 1222, 1316 |
| TaaI | ACNGT | 5 cut(s) | 218, 362, 468, 476, 625 |
| TaiI | ACGT | 1 cut(s) | 234 |
| TaqI | TCGA | 3 cut(s) | 279, 690, 757 |
| TatI | WGTACW | 4 cut(s) | 234, 384, 468, 1090 |
| TauI | GCSGC | 2 cut(s) | 300, 488 |
| TfiI | GAWTC | 5 cut(s) | 1003, 1237, 1250, 1301, 1360 |
| Tru1I | TTAA | 2 cut(s) | 141, 1044 |
| Tru9I | TTAA | 2 cut(s) | 141, 1044 |
| TscAI | CASTG | 2 cut(s) | 204, 875 |
| TseFI | GTSAC | 2 cut(s) | 218, 913 |
| TseI | GCWGC | 3 cut(s) | 294, 815, 881 |
| Tsp45I | GTSAC | 2 cut(s) | 218, 913 |
| TspDTI | ATGAA | 4 cut(s) | 203, 383, 415, 1029 |
| TspRI | CASTG | 2 cut(s) | 204, 875 |
| VpaK11BI | GGWCC | 1 cut(s) | 908 |
| XapI | RAATTY | 5 cut(s) | 561, 875, 919, 1078, 1163 |
| XceI | RCATGY | 1 cut(s) | 1297 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1372 |
| XmiI | GTMKAC | 1 cut(s) | 1229 |
| XmnI | GAANNNNTTC | 4 cut(s) | 89, 261, 374, 1359 |
| XspI | CTAG | 2 cut(s) | 827, 1025 |
| ZrmI | AGTACT | 1 cut(s) | 386 |