RchiOBHm_Chr6g0299131

Lariat debranching

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
60340352 .. 60342865
2514 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26858

Sequence Viewer

Length: 1434 bp
ATGTTTTTATTTATTTATCTTTTGTTTTTCTCTAAAATTGGGTTGGGCTCCTCAGGCCAGAGATCGGGCCGGAAAACCGACTGGAACAATTTCTGGCCTAATAGTTGGAAAACCCCCCCAAACGCATATAAATGTTGGCTTAAACCCCCATATATTGTTATTTGGAACTGGGAATTGAGGTTGAGAATGAAAATTGCAGTGGAAGGTTGTATGCACGGTGACCTGGAGAACGTGTACAGAACCCTCCAACACATAGAAAAAGTTCACAACACCAAAATCGACCTCCTCCTCTGCTGCGGCGACTTTCAGGCTGTGAGGAATGAGAAGGATTTGGAGAGCTTGAGTGTGCCCCCCAAGTACCGTTCCATGAACTCCTTCTGGAAGTACTATGCCGGCGAGGAGATCGCTCCCTATCCCACCATATTCATCGGTGGCAATCACGAAGCTTGTAATTATCTGTGGGAACTGTACTACGGTGGGTGGGCGGCACCTAATATATACTTCTTGGGGTTTGCTGGGGTAGTCAAGTTCGGAAACCTTCGCATTGGTGGCCTCTCTGGAATTTATAAGTCGCGAGACTATCGTTCAGGACACTATGAGAGGCCTCCTTATAATGCAAATACCGTCAAGTCTGTATATCATGTTCGTGAGTATGATGTCCACAAACTCATGCAAGTTGAGGAACCAGTCGATATTTTTCTTTCACATGATTGGCCTCTTGGCATCACCGATTGTGGGGACTGGAAGCAACTTGTTCGATACAAACCTCATTTTGAGACTGAGGTTCGGGAAAGAACCCTGGGAAGTAAACCTGCTGCTCAATTGCTAGAAAAATTGAAACCACCCTATTGGTTTTCAGCTCATCTACACTGCAAATTTGCTGCTCGTGTTCAGCATGGGGAAGATGGTCCCGTGACGAATTTTCTTGCTCTTGATAAGTGTCTTCCTGGAAAGAAGTTTTTGCAGGTTCTTGATATTGACTCAGAGCCAGGGCCGTACGAGATTCAGTATGATGAAGAATGGCTAGAAATAACTCGGAGGTTTAACCCTATTTTCCCTCTCACAATCAGGAGTGCAAATTTCAGGGGTGTACATATTGACAAGCAAGATTGTCGTCAATGGGTAAGGAGTAAGCTACAAGCAAGAGGTGCCCGACCTTTTGAATTCAGCCAGACAGCTCCATCTTATAATCCCTCTAATTCTGTCTCAAATGGTTCCTCGCCTGGGTATACTCGGAATCCTCAAACAGAATCTTTGTTGCAGTTTCTGGAACTCCCTTATCTTCTTGATGACATGTCAGAATCTTCAGAAGTATCCAGGAGTCCTTTTCCATCAAGCGATAGAGATGACAGCGAAGAGATTCCCATTGATGATGTGGATGAGTTGGAAGACCTTGCTGAAGAGGCTGGAGATGCTGAACATGAAGATGTATGA

Protein Analysis

477

Amino Acids

55.2

Weight (kDa)

5.61

Isoelectric Point (pI)

50.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Metallophos PF00149 63 - 291 1.3e-14 Calcineurin-like phosphoesterase
DBR1 PF05011 305 - 426 3.4e-28 Lariat debranching enzyme, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 567, 612, 1188
Acc36I ACCTGC 2 cut(s) 820, 955
AccB1I GGYRCC 2 cut(s) 487, 1148
AccI GTMKAC 1 cut(s) 1229
AccII CGCG 1 cut(s) 574
AciI CCGC 2 cut(s) 297, 485
AcsI RAATTY 5 cut(s) 561, 875, 919, 1078, 1163
AcuI CTGAAG 2 cut(s) 1290, 1419
AfaI GTAC 6 cut(s) 236, 359, 386, 470, 998, 1092
AfiI CCNNNNNNNGG 3 cut(s) 64, 735, 1224
AflIII ACRYGT 2 cut(s) 231, 1293
AgsI TTSAA 2 cut(s) 838, 1163
AjnI CCWGG 6 cut(s) 222, 798, 946, 988, 1222, 1316
AluBI AGCT 5 cut(s) 339, 446, 860, 1135, 1178
AluI AGCT 5 cut(s) 339, 446, 860, 1135, 1178
Alw26I GTCTC 3 cut(s) 570, 770, 1210
AlwNI CAGNNNCTG 1 cut(s) 1267
AoxI GGCC 7 cut(s) 55, 67, 95, 550, 602, 713, 992
ApeKI GCWGC 3 cut(s) 294, 815, 881
ApoI RAATTY 5 cut(s) 561, 875, 919, 1078, 1163
Asp700I GAANNNNTTC 4 cut(s) 89, 261, 374, 1359
AspS9I GGNCC 3 cut(s) 67, 908, 992
AsuHPI GGTGA 2 cut(s) 230, 718
AvaII GGWCC 1 cut(s) 908
AxyI CCTNAGG 1 cut(s) 52
BaeGI GKGCMC 2 cut(s) 351, 1153
BanI GGYRCC 2 cut(s) 487, 1148
BanII GRGCYC 1 cut(s) 50
BauI CACGAG 1 cut(s) 885
BbsI GAAGAC 2 cut(s) 935, 1395
BbvI GCAGC 3 cut(s) 281, 802, 868
BccI CCATC 3 cut(s) 899, 1189, 1339
BceAI ACGGC 1 cut(s) 979
BcgI CGANNNNNNTGC 4 cut(s) 737, 771, 1094, 1128
BciT130I CCWGG 6 cut(s) 224, 800, 948, 990, 1224, 1318
BciVI GTATCC 1 cut(s) 1324
BcoDI GTCTC 3 cut(s) 570, 770, 1210
BfaI CTAG 2 cut(s) 827, 1025
BfuAI ACCTGC 2 cut(s) 820, 955
BfuI GTATCC 1 cut(s) 1324
BisI GCNGC 5 cut(s) 295, 298, 486, 816, 882
BlsI GCNGC 5 cut(s) 296, 299, 487, 817, 883
BmcAI AGTACT 1 cut(s) 386
Bme1390I CCNGG 6 cut(s) 224, 800, 948, 990, 1224, 1318
Bme18I GGWCC 1 cut(s) 908
BmgT120I GGNCC 3 cut(s) 67, 908, 992
BmiI GGNNCC 6 cut(s) 49, 489, 684, 910, 1150, 1216
BmrFI CCNGG 6 cut(s) 224, 800, 948, 990, 1224, 1318
BmrI ACTGGG 1 cut(s) 178
BmsI GCATC 2 cut(s) 732, 1402
BmuI ACTGGG 1 cut(s) 178
BpiI GAAGAC 2 cut(s) 935, 1395
BpmI CTGGAG 2 cut(s) 245, 1428
BpuEI CTTGAG 1 cut(s) 361
BsaJI CCNNGG 4 cut(s) 798, 799, 989, 1223
BsaXI ACNNNNNCTCC 2 cut(s) 218, 248
Bsc4I CCNNNNNNNGG 3 cut(s) 64, 735, 1224
Bse118I RCCGGY 1 cut(s) 392
Bse1I ACTGG 4 cut(s) 86, 173, 686, 746
Bse21I CCTNAGG 1 cut(s) 52
BseBI CCWGG 6 cut(s) 224, 800, 948, 990, 1224, 1318
BseDI CCNNGG 4 cut(s) 798, 799, 989, 1223
BseGI GGATG 1 cut(s) 1384
BseLI CCNNNNNNNGG 3 cut(s) 64, 735, 1224
BseMII CTCAG 3 cut(s) 66, 771, 996
BseNI ACTGG 4 cut(s) 86, 173, 686, 746
BseRI GAGGAG 4 cut(s) 40, 275, 278, 413
BseSI GKGCMC 2 cut(s) 351, 1153
BseXI GCAGC 3 cut(s) 281, 802, 868
BseYI CCCAGC 1 cut(s) 515
Bsh1236I CGCG 1 cut(s) 574
BshFI GGCC 7 cut(s) 57, 69, 97, 552, 604, 715, 994
BshNI GGYRCC 2 cut(s) 487, 1148
BsiSI CCGG 2 cut(s) 70, 393
BsiWI CGTACG 1 cut(s) 996
BslFI GGGAC 2 cut(s) 752, 894
BslI CCNNNNNNNGG 3 cut(s) 64, 735, 1224
BsmAI GTCTC 3 cut(s) 570, 770, 1210
BsmFI GGGAC 2 cut(s) 752, 894
BsnI GGCC 7 cut(s) 57, 69, 97, 552, 604, 715, 994
Bsp1286I GDGCHC 3 cut(s) 50, 351, 1153
Bsp1407I TGTACA 2 cut(s) 234, 1090
Bsp143I GATC 2 cut(s) 62, 402
Bsp68I TCGCGA 1 cut(s) 574
BspACI CCGC 2 cut(s) 297, 485
BspANI GGCC 7 cut(s) 57, 69, 97, 552, 604, 715, 994
BspCNI CTCAG 3 cut(s) 65, 772, 995
BspFNI CGCG 1 cut(s) 574
BspLI GGNNCC 6 cut(s) 49, 489, 684, 910, 1150, 1216
BspMI ACCTGC 2 cut(s) 820, 955
BspT107I GGYRCC 2 cut(s) 487, 1148
BsrFI RCCGGY 1 cut(s) 392
BsrGI TGTACA 2 cut(s) 234, 1090
BsrI ACTGG 4 cut(s) 86, 173, 686, 746
BssAI RCCGGY 1 cut(s) 392
BssECI CCNNGG 4 cut(s) 798, 799, 989, 1223
BssMI GATC 2 cut(s) 62, 402
BssNAI GTATAC 1 cut(s) 1230
BssSI CACGAG 1 cut(s) 885
Bst1107I GTATAC 1 cut(s) 1230
Bst2BI CACGAG 1 cut(s) 885
Bst2UI CCWGG 6 cut(s) 224, 800, 948, 990, 1224, 1318
Bst4CI ACNGT 5 cut(s) 218, 362, 468, 476, 625
Bst6I CTCTTC 2 cut(s) 1350, 1395
BstAPI GCANNNNNTGC 1 cut(s) 1148
BstAUI TGTACA 2 cut(s) 234, 1090
BstC8I GCNNGC 1 cut(s) 394
BstDEI CTNAG 3 cut(s) 52, 780, 982
BstEII GGTNACC 1 cut(s) 218
BstF5I GGATG 1 cut(s) 1384
BstFNI CGCG 1 cut(s) 574
BstKTI GATC 2 cut(s) 65, 405
BstMAI GTCTC 3 cut(s) 570, 770, 1210
BstMBI GATC 2 cut(s) 62, 402
BstMWI GCNNNNNNNGC 5 cut(s) 54, 549, 1148, 1403, 1412
BstNI CCWGG 6 cut(s) 224, 800, 948, 990, 1224, 1318
BstNSI RCATGY 1 cut(s) 1297
BstPI GGTNACC 1 cut(s) 218
BstSCI CCNGG 6 cut(s) 222, 798, 946, 988, 1222, 1316
BstSLI GKGCMC 2 cut(s) 351, 1153
BstUI CGCG 1 cut(s) 574
BstV1I GCAGC 3 cut(s) 281, 802, 868
BstV2I GAAGAC 2 cut(s) 935, 1395
BstXI CCANNNNNNTGG 1 cut(s) 849
BstZ17I GTATAC 1 cut(s) 1230
Bsu36I CCTNAGG 1 cut(s) 52
BsuI GTATCC 1 cut(s) 1324
BsuRI GGCC 7 cut(s) 57, 69, 97, 552, 604, 715, 994
BtsCI GGATG 1 cut(s) 1384
BtsI GCAGTG 2 cut(s) 204, 868
BtsIMutI CAGTG 2 cut(s) 204, 868
BtuMI TCGCGA 1 cut(s) 574
BveI ACCTGC 2 cut(s) 820, 955
Cac8I GCNNGC 1 cut(s) 394
CaiI CAGNNNCTG 1 cut(s) 1267
Cfr10I RCCGGY 1 cut(s) 392
Cfr13I GGNCC 3 cut(s) 67, 908, 992
Csp6I GTAC 6 cut(s) 235, 358, 385, 469, 997, 1091
CviAII CATG 7 cut(s) 367, 641, 670, 707, 896, 1294, 1421
CviQI GTAC 6 cut(s) 235, 358, 385, 469, 997, 1091
DdeI CTNAG 3 cut(s) 52, 780, 982
DpnI GATC 2 cut(s) 64, 404
DpnII GATC 2 cut(s) 62, 402
Eam1104I CTCTTC 2 cut(s) 1350, 1395
EarI CTCTTC 2 cut(s) 1350, 1395
Eco147I AGGCCT 1 cut(s) 604
Eco24I GRGCYC 1 cut(s) 50
Eco47I GGWCC 1 cut(s) 908
Eco57I CTGAAG 2 cut(s) 1290, 1419
Eco81I CCTNAGG 1 cut(s) 52
Eco91I GGTNACC 1 cut(s) 218
EcoO65I GGTNACC 1 cut(s) 218
EcoRI GAATTC 1 cut(s) 1163
EcoRII CCWGG 6 cut(s) 222, 798, 946, 988, 1222, 1316
EcoT38I GRGCYC 1 cut(s) 50
FaeI CATG 7 cut(s) 370, 644, 673, 710, 899, 1297, 1424
FaqI GGGAC 2 cut(s) 752, 894
FatI CATG 7 cut(s) 366, 640, 669, 706, 895, 1293, 1420
FblI GTMKAC 1 cut(s) 1229
Fnu4HI GCNGC 5 cut(s) 295, 298, 486, 816, 882
FokI GGATG 1 cut(s) 1391
FriOI GRGCYC 1 cut(s) 50
Fsp4HI GCNGC 5 cut(s) 295, 298, 486, 816, 882
FspBI CTAG 2 cut(s) 827, 1025
GluI GCNGC 5 cut(s) 295, 298, 486, 816, 882
GsaI CCCAGC 1 cut(s) 519
GsuI CTGGAG 2 cut(s) 245, 1428
HaeIII GGCC 7 cut(s) 57, 69, 97, 552, 604, 715, 994
HapII CCGG 2 cut(s) 70, 393
Hin1II CATG 7 cut(s) 370, 644, 673, 710, 899, 1297, 1424
HindIII AAGCTT 1 cut(s) 444
HinfI GANTC 7 cut(s) 980, 1003, 1237, 1250, 1301, 1321, 1360
HpaII CCGG 2 cut(s) 70, 393
HphI GGTGA 2 cut(s) 230, 718
Hpy166II GTNNAC 6 cut(s) 235, 265, 661, 809, 1091, 1230
Hpy188I TCNGA 6 cut(s) 533, 985, 1038, 1236, 1300, 1309
Hpy8I GTNNAC 6 cut(s) 235, 265, 661, 809, 1091, 1230
HpyAV CCTTC 4 cut(s) 197, 319, 385, 548
HpyCH4III ACNGT 5 cut(s) 218, 362, 468, 476, 625
HpyCH4IV ACGT 1 cut(s) 231
HpyCH4V TGCA 8 cut(s) 197, 214, 617, 673, 873, 964, 1076, 1261
HpyF10VI GCNNNNNNNGC 5 cut(s) 54, 549, 1148, 1403, 1412
HpyF3I CTNAG 3 cut(s) 52, 780, 982
HpySE526I ACGT 1 cut(s) 231
Hsp92II CATG 7 cut(s) 370, 644, 673, 710, 899, 1297, 1424
KroI GCCGGC 1 cut(s) 392
KroNI GCCGGC 1 cut(s) 394
Kzo9I GATC 2 cut(s) 62, 402
LmnI GCTCC 3 cut(s) 53, 412, 1183
Lsp1109I GCAGC 3 cut(s) 281, 802, 868
LweI GCATC 2 cut(s) 732, 1402
MaeI CTAG 2 cut(s) 827, 1025
MaeII ACGT 1 cut(s) 231
MaeIII GTNAC 2 cut(s) 218, 913
MalI GATC 2 cut(s) 64, 404
MboI GATC 2 cut(s) 62, 402
MboII GAAGA 8 cut(s) 914, 935, 1028, 1274, 1296, 1367, 1400, 1412
MfeI CAATTG 1 cut(s) 821
MhlI GDGCHC 3 cut(s) 50, 351, 1153
MlyI GAGTC 2 cut(s) 974, 1330
MmeI TCCRAC 3 cut(s) 86, 271, 1365
MroNI GCCGGC 1 cut(s) 392
MroXI GAANNNNTTC 4 cut(s) 89, 261, 374, 1359
MseI TTAA 2 cut(s) 141, 1044
MslI CAYNNNNRTG 3 cut(s) 130, 645, 1425
MspI CCGG 2 cut(s) 70, 393
MspR9I CCNGG 6 cut(s) 224, 800, 948, 990, 1224, 1318
MunI CAATTG 1 cut(s) 821
MvaI CCWGG 6 cut(s) 224, 800, 948, 990, 1224, 1318
MvnI CGCG 1 cut(s) 574
MwoI GCNNNNNNNGC 5 cut(s) 54, 549, 1148, 1403, 1412
NaeI GCCGGC 1 cut(s) 394
NdeII GATC 2 cut(s) 62, 402
NgoMIV GCCGGC 1 cut(s) 392
NlaIII CATG 7 cut(s) 370, 644, 673, 710, 899, 1297, 1424
NlaIV GGNNCC 6 cut(s) 49, 489, 684, 910, 1150, 1216
NmuCI GTSAC 2 cut(s) 218, 913
NruI TCGCGA 1 cut(s) 574
NspI RCATGY 1 cut(s) 1297
PasI CCCWGGG 1 cut(s) 799
PceI AGGCCT 1 cut(s) 604
PciI ACATGT 1 cut(s) 1293
PdiI GCCGGC 1 cut(s) 394
PdmI GAANNNNTTC 4 cut(s) 89, 261, 374, 1359
PfeI GAWTC 5 cut(s) 1003, 1237, 1250, 1301, 1360
Pfl23II CGTACG 1 cut(s) 996
PfoI TCCNGGA 2 cut(s) 946, 1316
PkrI GCNGC 5 cut(s) 296, 299, 487, 817, 883
PleI GAGTC 2 cut(s) 974, 1329
PpsI GAGTC 2 cut(s) 974, 1329
PscI ACATGT 1 cut(s) 1293
PsiI TTATAA 3 cut(s) 567, 612, 1188
Psp6I CCWGG 6 cut(s) 222, 798, 946, 988, 1222, 1316
PspEI GGTNACC 1 cut(s) 218
PspFI CCCAGC 1 cut(s) 515
PspGI CCWGG 6 cut(s) 222, 798, 946, 988, 1222, 1316
PspLI CGTACG 1 cut(s) 996
PspN4I GGNNCC 6 cut(s) 49, 489, 684, 910, 1150, 1216
PspPI GGNCC 3 cut(s) 67, 908, 992
PsrI GAACNNNNNNTAC 2 cut(s) 627, 659
PstNI CAGNNNCTG 1 cut(s) 1267
RruI TCGCGA 1 cut(s) 574
RsaI GTAC 6 cut(s) 236, 359, 386, 470, 998, 1092
RsaNI GTAC 6 cut(s) 235, 358, 385, 469, 997, 1091
RseI CAYNNNNRTG 3 cut(s) 130, 645, 1425
SaqAI TTAA 2 cut(s) 141, 1044
SatI GCNGC 5 cut(s) 295, 298, 486, 816, 882
Sau3AI GATC 2 cut(s) 62, 402
Sau96I GGNCC 3 cut(s) 67, 908, 992
ScaI AGTACT 1 cut(s) 386
SchI GAGTC 2 cut(s) 974, 1330
ScrFI CCNGG 6 cut(s) 224, 800, 948, 990, 1224, 1318
SduI GDGCHC 3 cut(s) 50, 351, 1153
SfaNI GCATC 2 cut(s) 732, 1402
SinI GGWCC 1 cut(s) 908
SmiMI CAYNNNNRTG 3 cut(s) 130, 645, 1425
SmlI CTYRAG 1 cut(s) 340
SmoI CTYRAG 1 cut(s) 340
SseBI AGGCCT 1 cut(s) 604
SsiI CCGC 2 cut(s) 297, 485
SspMI CTAG 2 cut(s) 827, 1025
StuI AGGCCT 1 cut(s) 604
StyD4I CCNGG 6 cut(s) 222, 798, 946, 988, 1222, 1316
TaaI ACNGT 5 cut(s) 218, 362, 468, 476, 625
TaiI ACGT 1 cut(s) 234
TaqI TCGA 3 cut(s) 279, 690, 757
TatI WGTACW 4 cut(s) 234, 384, 468, 1090
TauI GCSGC 2 cut(s) 300, 488
TfiI GAWTC 5 cut(s) 1003, 1237, 1250, 1301, 1360
Tru1I TTAA 2 cut(s) 141, 1044
Tru9I TTAA 2 cut(s) 141, 1044
TscAI CASTG 2 cut(s) 204, 875
TseFI GTSAC 2 cut(s) 218, 913
TseI GCWGC 3 cut(s) 294, 815, 881
Tsp45I GTSAC 2 cut(s) 218, 913
TspDTI ATGAA 4 cut(s) 203, 383, 415, 1029
TspRI CASTG 2 cut(s) 204, 875
VpaK11BI GGWCC 1 cut(s) 908
XapI RAATTY 5 cut(s) 561, 875, 919, 1078, 1163
XceI RCATGY 1 cut(s) 1297
XcmI CCANNNNNNNNNTGG 1 cut(s) 1372
XmiI GTMKAC 1 cut(s) 1229
XmnI GAANNNNTTC 4 cut(s) 89, 261, 374, 1359
XspI CTAG 2 cut(s) 827, 1025
ZrmI AGTACT 1 cut(s) 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.