Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0002005

Physical Location & Seq

Genomic Coordinates Forward (+)

51805604 .. 51805879

Gene Structure 276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG254100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 204 bp

ATGAACTCCTTCTGGAAGTACTATTCCGGCGAGGAGATCGCTCCCTACCCCACCATATTCATCGGTGGCAATCACGAAGCTTCTAATTATTTGTGGGAACTGTACTACGGTGGGTGGGCGGCACCTAATATATACTTCTTGGGGTTTCTCTGGGGTAGTCAAGTTCGGAAACCTTCGCATTGGTGGCCTCTCTGGAATTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0008419 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DBR1 Metallophos peroxidase

Protein Analysis

67

Amino Acids

8.02

Weight (kDa)

6.0

Isoelectric Point (pI)

49.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002005)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31770 AT4G31770
fragaria_vesca	FvH4_2g41360 FvH4_6g29560
malus_domestica	MD08G1051300.v1.1 MD13G1228500.v1.1 MD15G1043800.v1.1
prunus_persica	Prupe.1G397300_v2.0.a1 Prupe.1G397300_v2.0.a1 Prupe.1G397300_v2.0.a1 Prupe.1G397300_v2.0.a1 Prupe.1G397300_v2.0.a1 Prupe.1G397300_v2.0.a1
pyrus_communis	pycom15g04070
rosa_chinensis	RchiOBHm_Chr1g0357361 RchiOBHm_Chr2g0135121 RchiOBHm_Chr6g0299131
rosa_laevigata	RLG00000011460 RLG00000019443 RLG00000028022
rosa_multiflora	Rmu_co8086444.1_g000001 Rmu_sc0001385.1_g000017 Rmu_sc0001434.1_g000018 Rmu_sc0003543.1_g000005
rosa_roxburghii	Rroxscaffold_2G00109470 Rroxscaffold_7G00168980
rosa_rugosa	Rorug01G0256500 Rorug02G0323300 Rorug06G0285600
rosa_samantha	Rh1AG270400 Rh1CG254100 Rh1CG254200 Rh2AG371700 Rh2BG379800 Rh2CG358900 Rh2DG396400 Rh6AG396600 Rh6BG404800 Rh6BG405000 Rh6CG411100 Rh6DG397800
rosa_wichuraiana	Rw0G013580 Rw1G023910 Rw1G023940 Rw6G034720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	202
AccB1I	GGYRCC	1 cut(s)	121
AciI	CCGC	1 cut(s)	119
AcsI	RAATTY	1 cut(s)	196
AfaI	GTAC	2 cut(s)	20, 104
AluBI	AGCT	1 cut(s)	80
AluI	AGCT	1 cut(s)	80
AoxI	GGCC	1 cut(s)	185
ApoI	RAATTY	1 cut(s)	196
Asp700I	GAANNNNTTC	1 cut(s)	8
BanI	GGYRCC	1 cut(s)	121
BisI	GCNGC	1 cut(s)	120
BlsI	GCNGC	1 cut(s)	121
BmcAI	AGTACT	1 cut(s)	20
BmiI	GGNNCC	1 cut(s)	123
BseRI	GAGGAG	1 cut(s)	47
BshFI	GGCC	1 cut(s)	187
BshNI	GGYRCC	1 cut(s)	121
BsiSI	CCGG	1 cut(s)	27
BsnI	GGCC	1 cut(s)	187
Bsp143I	GATC	1 cut(s)	36
BspACI	CCGC	1 cut(s)	119
BspANI	GGCC	1 cut(s)	187
BspLI	GGNNCC	1 cut(s)	123
BspT107I	GGYRCC	1 cut(s)	121
BssMI	GATC	1 cut(s)	36
Bst4CI	ACNGT	2 cut(s)	102, 110
BstKTI	GATC	1 cut(s)	39
BstMBI	GATC	1 cut(s)	36
BstMWI	GCNNNNNNNGC	1 cut(s)	184
BsuRI	GGCC	1 cut(s)	187
Csp6I	GTAC	2 cut(s)	19, 103
CviJI	RGCY	2 cut(s)	80, 187
CviKI_1	RGCY	2 cut(s)	80, 187
CviQI	GTAC	2 cut(s)	19, 103
DpnI	GATC	1 cut(s)	38
DpnII	GATC	1 cut(s)	36
FaiI	YATR	4 cut(s)	56, 131, 133, 202
Fnu4HI	GCNGC	1 cut(s)	120
Fsp4HI	GCNGC	1 cut(s)	120
GluI	GCNGC	1 cut(s)	120
HaeIII	GGCC	1 cut(s)	187
HapII	CCGG	1 cut(s)	27
HindIII	AAGCTT	1 cut(s)	78
HpaII	CCGG	1 cut(s)	27
Hpy188I	TCNGA	1 cut(s)	168
Hpy188III	TCNNGA	3 cut(s)	13, 74, 193
HpyAV	CCTTC	2 cut(s)	19, 183
HpyCH4III	ACNGT	2 cut(s)	102, 110
HpyF10VI	GCNNNNNNNGC	1 cut(s)	184
Kzo9I	GATC	1 cut(s)	36
LmnI	GCTCC	1 cut(s)	46
LpnPI	CCDG	3 cut(s)	40, 136, 178
MalI	GATC	1 cut(s)	38
MboI	GATC	1 cut(s)	36
MluCI	AATT	2 cut(s)	85, 196
MnlI	CCTC	2 cut(s)	25, 198
MroXI	GAANNNNTTC	1 cut(s)	8
MspI	CCGG	1 cut(s)	27
MwoI	GCNNNNNNNGC	1 cut(s)	184
NdeII	GATC	1 cut(s)	36
NlaIV	GGNNCC	1 cut(s)	123
PdmI	GAANNNNTTC	1 cut(s)	8
PkrI	GCNGC	1 cut(s)	121
PsiI	TTATAA	1 cut(s)	202
PspN4I	GGNNCC	1 cut(s)	123
RsaI	GTAC	2 cut(s)	20, 104
RsaNI	GTAC	2 cut(s)	19, 103
SatI	GCNGC	1 cut(s)	120
Sau3AI	GATC	1 cut(s)	36
ScaI	AGTACT	1 cut(s)	20
SetI	ASST	3 cut(s)	82, 127, 175
SgeI	CNNG	7 cut(s)	25, 39, 43, 86, 151, 163, 173
Sse9I	AATT	2 cut(s)	85, 196
SsiI	CCGC	1 cut(s)	119
TaaI	ACNGT	2 cut(s)	102, 110
TasI	AATT	2 cut(s)	85, 196
TatI	WGTACW	2 cut(s)	18, 102
TauI	GCSGC	1 cut(s)	122
TspDTI	ATGAA	2 cut(s)	17, 49
XapI	RAATTY	1 cut(s)	196
XmnI	GAANNNNTTC	1 cut(s)	8
ZrmI	AGTACT	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.