Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0002005

Physical Location & Seq

Genomic Coordinates Forward (+)

49850716 .. 49853058

Gene Structure 2343 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG270400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGGATGTATGCACGGTGACCTGGAGAACCCTCCAACACATAGAAAAAGTTGATAACACCAAAATCGACCTCCTCCTCTGCTACGGCGACTTTCAGGCTGTGAGGAATCGTGTGCCCCCCAAGTACCGGTCCATGAACTCCTTCTGGAAGTACTATTCCGGCGAGGAGATCGCTCCCTATCCCACCATATTCATCGGTGGCAATCACGAAGCTTGTAATTATTTGTGGGAACTCTACTACGGAGGGTGGGCGGCACCTTTCTTGGGGTTTGCTGGGGTAGTCAAGTTCGGAAACCTTCGCATTGGTGGCCGCTCTGGAATTTATAAGTCGCGAGACTATCGTTCAGGACACCCTCCTTACAATCAGAATACCGTTAAGTCTGTATATCATGTTCGTGAGTATGATGTCCACAAACTCATGCAAGTTGAGGAACCAATCGATATTTTTCTTTCACATGATTGGCCTCTTGGCATCACGGATGGTGGGGACTGGAAGCAACTTGTTCGATACAAACCTCATTTTGAGACCGAGGTTCGGGAAAGAACCCTGGGAAGTAAACCTGCTGCTCAATTGCTAGAAAAATTGAAACCACCCTATTGGTTTTCAGCTCATCTACACTGCAAATTTGCTGCTCGTGTTCAGCATGGGGAAGATGGTCCCCTGACGAATTTTCTTGCTCTTGATAAGTGTCTTCCTGGAAAGAAGTTTTTGCAGGTTCTTGATATTGACTCAGAGCCAGGGCCGTACGAGATTCAGTATGATGAAGAATGGCTAGAAATAACTCGAAGGTTTAACCCCATTTTCCCTCTCACAATCAGGAGTGCAAATTTCAGGGGTGTACATATTGACAAGCAAGATTGTCGTCAATGGGTAAGGAGTAAGCTACAAGCAAGAGGAGCCCGACCTTTTGAATTCAGCCAGACAGCTCCATCTTATAATCCCTCTAATTCTGTCTCAAATGGCTCCTCGCCTGGATATACTCGGAATCCTCAAACAGAATCTTTGTTGCAGTTTCTGGAACTCCCTTATCTTCTTGATGACATGTCAGAATCTTCGGAAGTATCCAGGAGTCCTTTTCCATCAAGCGATAGAGCGAAGAGATTCCCATTGATGATGTGGATGAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0008419 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DBR1 Metallophos peroxidase

Protein Analysis

375

Amino Acids

43.43

Weight (kDa)

8.1

Isoelectric Point (pI)

52.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metallophos	PF00149	10 - 207	9e-11	Calcineurin-like phosphoesterase
DBR1	PF05011	222 - 342	4.7e-28	Lariat debranching enzyme, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002005)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31770 AT4G31770
fragaria_vesca	FvH4_2g41360 FvH4_6g29560
malus_domestica	MD08G1051300.v1.1 MD13G1228500.v1.1 MD15G1043800.v1.1
prunus_persica	Prupe.1G397300_v2.0.a1 Prupe.1G397300_v2.0.a1 Prupe.1G397300_v2.0.a1 Prupe.1G397300_v2.0.a1 Prupe.1G397300_v2.0.a1 Prupe.1G397300_v2.0.a1
pyrus_communis	pycom15g04070
rosa_chinensis	RchiOBHm_Chr1g0357361 RchiOBHm_Chr2g0135121 RchiOBHm_Chr6g0299131
rosa_laevigata	RLG00000011460 RLG00000019443 RLG00000028022
rosa_multiflora	Rmu_co8086444.1_g000001 Rmu_sc0001385.1_g000017 Rmu_sc0001434.1_g000018 Rmu_sc0003543.1_g000005
rosa_roxburghii	Rroxscaffold_2G00109470 Rroxscaffold_7G00168980
rosa_rugosa	Rorug01G0256500 Rorug02G0323300 Rorug06G0285600
rosa_samantha	Rh1AG270400 Rh1CG254100 Rh1CG254200 Rh2AG371700 Rh2BG379800 Rh2CG358900 Rh2DG396400 Rh6AG396600 Rh6BG404800 Rh6BG405000 Rh6CG411100 Rh6DG397800
rosa_wichuraiana	Rw0G013580 Rw1G023910 Rw1G023940 Rw6G034720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	324, 936
Acc36I	ACCTGC	2 cut(s)	568, 703
AccB1I	GGYRCC	1 cut(s)	253
AccBSI	CCGCTC	1 cut(s)	312
AccII	CGCG	1 cut(s)	331
AciI	CCGC	2 cut(s)	251, 310
AcoI	YGGCCR	1 cut(s)	307
AcsI	RAATTY	5 cut(s)	318, 623, 667, 826, 911
AfaI	GTAC	4 cut(s)	125, 152, 746, 840
AfiI	CCNNNNNNNGG	3 cut(s)	126, 263, 534
AflIII	ACRYGT	1 cut(s)	1041
AgeI	ACCGGT	1 cut(s)	126
AgsI	TTSAA	2 cut(s)	586, 911
AjnI	CCWGG	6 cut(s)	20, 546, 694, 736, 970, 1064
AluBI	AGCT	4 cut(s)	212, 608, 883, 926
AluI	AGCT	4 cut(s)	212, 608, 883, 926
Alw26I	GTCTC	3 cut(s)	327, 518, 958
AlwNI	CAGNNNCTG	1 cut(s)	1015
AoxI	GGCC	3 cut(s)	307, 461, 740
ApeKI	GCWGC	2 cut(s)	563, 629
ApoI	RAATTY	5 cut(s)	318, 623, 667, 826, 911
AsiGI	ACCGGT	1 cut(s)	126
Asp700I	GAANNNNTTC	2 cut(s)	140, 1100
AspS9I	GGNCC	3 cut(s)	129, 656, 740
AsuHPI	GGTGA	1 cut(s)	28
AvaII	GGWCC	2 cut(s)	129, 656
BaeGI	GKGCMC	1 cut(s)	117
BanI	GGYRCC	1 cut(s)	253
BanII	GRGCYC	1 cut(s)	901
BauI	CACGAG	1 cut(s)	633
BbsI	GAAGAC	1 cut(s)	683
BbvI	GCAGC	2 cut(s)	550, 616
BccI	CCATC	4 cut(s)	473, 647, 937, 1087
BceAI	ACGGC	2 cut(s)	100, 727
BcgI	CGANNNNNNTGC	4 cut(s)	485, 519, 842, 876
BciT130I	CCWGG	6 cut(s)	22, 548, 696, 738, 972, 1066
BciVI	GTATCC	1 cut(s)	1072
BcoDI	GTCTC	3 cut(s)	327, 518, 958
BfaI	CTAG	2 cut(s)	575, 773
BfuAI	ACCTGC	2 cut(s)	568, 703
BfuI	GTATCC	1 cut(s)	1072
BisI	GCNGC	4 cut(s)	252, 310, 564, 630
BlsI	GCNGC	4 cut(s)	253, 311, 565, 631
BmcAI	AGTACT	1 cut(s)	152
Bme1390I	CCNGG	6 cut(s)	22, 548, 696, 738, 972, 1066
Bme18I	GGWCC	2 cut(s)	129, 656
BmgT120I	GGNCC	3 cut(s)	129, 656, 740
BmiI	GGNNCC	5 cut(s)	255, 432, 658, 898, 964
BmrFI	CCNGG	6 cut(s)	22, 548, 696, 738, 972, 1066
BmsI	GCATC	1 cut(s)	480
BpiI	GAAGAC	1 cut(s)	683
BpmI	CTGGAG	1 cut(s)	43
Bsa29I	ATCGAT	1 cut(s)	438
BsaI	GGTCTC	1 cut(s)	518
BsaJI	CCNNGG	4 cut(s)	528, 546, 547, 737
BsaWI	WCCGGW	1 cut(s)	126
Bsc4I	CCNNNNNNNGG	3 cut(s)	126, 263, 534
Bse118I	RCCGGY	1 cut(s)	126
Bse1I	ACTGG	1 cut(s)	494
BseBI	CCWGG	6 cut(s)	22, 548, 696, 738, 972, 1066
BseCI	ATCGAT	1 cut(s)	438
BseDI	CCNNGG	4 cut(s)	528, 546, 547, 737
BseGI	GGATG	3 cut(s)	10, 484, 1125
BseLI	CCNNNNNNNGG	3 cut(s)	126, 263, 534
BseMII	CTCAG	1 cut(s)	744
BseNI	ACTGG	1 cut(s)	494
BseRI	GAGGAG	5 cut(s)	62, 65, 179, 909, 955
BseSI	GKGCMC	1 cut(s)	117
BseXI	GCAGC	2 cut(s)	550, 616
BseYI	CCCAGC	1 cut(s)	272
Bsh1236I	CGCG	1 cut(s)	331
BshFI	GGCC	3 cut(s)	309, 463, 742
BshNI	GGYRCC	1 cut(s)	253
BshTI	ACCGGT	1 cut(s)	126
BshVI	ATCGAT	1 cut(s)	438
BsiSI	CCGG	2 cut(s)	127, 159
BsiWI	CGTACG	1 cut(s)	744
BslFI	GGGAC	2 cut(s)	500, 642
BslI	CCNNNNNNNGG	3 cut(s)	126, 263, 534
BsmAI	GTCTC	3 cut(s)	327, 518, 958
BsmFI	GGGAC	2 cut(s)	500, 642
BsnI	GGCC	3 cut(s)	309, 463, 742
Bso31I	GGTCTC	1 cut(s)	518
Bsp1286I	GDGCHC	2 cut(s)	117, 901
Bsp1407I	TGTACA	1 cut(s)	838
Bsp143I	GATC	1 cut(s)	168
Bsp68I	TCGCGA	1 cut(s)	331
BspACI	CCGC	2 cut(s)	251, 310
BspANI	GGCC	3 cut(s)	309, 463, 742
BspCNI	CTCAG	1 cut(s)	743
BspDI	ATCGAT	1 cut(s)	438
BspFNI	CGCG	1 cut(s)	331
BspLI	GGNNCC	5 cut(s)	255, 432, 658, 898, 964
BspMI	ACCTGC	2 cut(s)	568, 703
BspT107I	GGYRCC	1 cut(s)	253
BspTNI	GGTCTC	1 cut(s)	518
BsrBI	CCGCTC	1 cut(s)	312
BsrFI	RCCGGY	1 cut(s)	126
BsrGI	TGTACA	1 cut(s)	838
BsrI	ACTGG	1 cut(s)	494
BssAI	RCCGGY	1 cut(s)	126
BssECI	CCNNGG	4 cut(s)	528, 546, 547, 737
BssMI	GATC	1 cut(s)	168
BssSI	CACGAG	1 cut(s)	633
Bst2BI	CACGAG	1 cut(s)	633
Bst2UI	CCWGG	6 cut(s)	22, 548, 696, 738, 972, 1066
Bst4CI	ACNGT	2 cut(s)	16, 373
Bst6I	CTCTTC	1 cut(s)	1091
BstAUI	TGTACA	1 cut(s)	838
BstDEI	CTNAG	1 cut(s)	730
BstEII	GGTNACC	1 cut(s)	16
BstF5I	GGATG	3 cut(s)	10, 484, 1125
BstFNI	CGCG	1 cut(s)	331
BstKTI	GATC	1 cut(s)	171
BstMAI	GTCTC	3 cut(s)	327, 518, 958
BstMBI	GATC	1 cut(s)	168
BstMWI	GCNNNNNNNGC	2 cut(s)	306, 896
BstNI	CCWGG	6 cut(s)	22, 548, 696, 738, 972, 1066
BstNSI	RCATGY	1 cut(s)	1045
BstPI	GGTNACC	1 cut(s)	16
BstSCI	CCNGG	6 cut(s)	20, 546, 694, 736, 970, 1064
BstSLI	GKGCMC	1 cut(s)	117
BstUI	CGCG	1 cut(s)	331
BstV1I	GCAGC	2 cut(s)	550, 616
BstV2I	GAAGAC	1 cut(s)	683
BstXI	CCANNNNNNTGG	1 cut(s)	597
Bsu15I	ATCGAT	1 cut(s)	438
BsuI	GTATCC	1 cut(s)	1072
BsuRI	GGCC	3 cut(s)	309, 463, 742
BsuTUI	ATCGAT	1 cut(s)	438
BtsCI	GGATG	3 cut(s)	10, 484, 1125
BtsI	GCAGTG	1 cut(s)	616
BtsIMutI	CAGTG	1 cut(s)	616
BtuMI	TCGCGA	1 cut(s)	331
BveI	ACCTGC	2 cut(s)	568, 703
CaiI	CAGNNNCTG	1 cut(s)	1015
Cfr10I	RCCGGY	1 cut(s)	126
Cfr13I	GGNCC	3 cut(s)	129, 656, 740
ClaI	ATCGAT	1 cut(s)	438
Csp6I	GTAC	4 cut(s)	124, 151, 745, 839
CspAI	ACCGGT	1 cut(s)	126
CviAII	CATG	6 cut(s)	133, 389, 418, 455, 644, 1042
CviQI	GTAC	4 cut(s)	124, 151, 745, 839
DdeI	CTNAG	1 cut(s)	730
DpnI	GATC	1 cut(s)	170
DpnII	GATC	1 cut(s)	168
EaeI	YGGCCR	1 cut(s)	307
Eam1104I	CTCTTC	1 cut(s)	1091
EarI	CTCTTC	1 cut(s)	1091
Eco24I	GRGCYC	1 cut(s)	901
Eco31I	GGTCTC	1 cut(s)	518
Eco47I	GGWCC	2 cut(s)	129, 656
Eco91I	GGTNACC	1 cut(s)	16
EcoO65I	GGTNACC	1 cut(s)	16
EcoRI	GAATTC	1 cut(s)	911
EcoRII	CCWGG	6 cut(s)	20, 546, 694, 736, 970, 1064
EcoT38I	GRGCYC	1 cut(s)	901
FaeI	CATG	6 cut(s)	136, 392, 421, 458, 647, 1045
FaqI	GGGAC	2 cut(s)	500, 642
FatI	CATG	6 cut(s)	132, 388, 417, 454, 643, 1041
Fnu4HI	GCNGC	4 cut(s)	252, 310, 564, 630
FokI	GGATG	2 cut(s)	17, 491
FriOI	GRGCYC	1 cut(s)	901
Fsp4HI	GCNGC	4 cut(s)	252, 310, 564, 630
FspBI	CTAG	2 cut(s)	575, 773
GluI	GCNGC	4 cut(s)	252, 310, 564, 630
GsaI	CCCAGC	1 cut(s)	276
GsuI	CTGGAG	1 cut(s)	43
HaeIII	GGCC	3 cut(s)	309, 463, 742
HapII	CCGG	2 cut(s)	127, 159
Hin1II	CATG	6 cut(s)	136, 392, 421, 458, 647, 1045
HindIII	AAGCTT	1 cut(s)	210
HinfI	GANTC	8 cut(s)	106, 728, 751, 985, 998, 1049, 1069, 1101
HpaII	CCGG	2 cut(s)	127, 159
HphI	GGTGA	1 cut(s)	28
Hpy166II	GTNNAC	3 cut(s)	409, 557, 839
Hpy188I	TCNGA	6 cut(s)	290, 366, 733, 984, 1048, 1057
Hpy8I	GTNNAC	3 cut(s)	409, 557, 839
HpyAV	CCTTC	3 cut(s)	151, 305, 780
HpyCH4III	ACNGT	2 cut(s)	16, 373
HpyCH4V	TGCA	6 cut(s)	12, 421, 621, 712, 824, 1009
HpyF10VI	GCNNNNNNNGC	2 cut(s)	306, 896
HpyF3I	CTNAG	1 cut(s)	730
Hsp92II	CATG	6 cut(s)	136, 392, 421, 458, 647, 1045
Kzo9I	GATC	1 cut(s)	168
LmnI	GCTCC	4 cut(s)	178, 896, 931, 968
Lsp1109I	GCAGC	2 cut(s)	550, 616
LweI	GCATC	1 cut(s)	480
MaeI	CTAG	2 cut(s)	575, 773
MaeIII	GTNAC	1 cut(s)	16
MalI	GATC	1 cut(s)	170
MbiI	CCGCTC	1 cut(s)	312
MboI	GATC	1 cut(s)	168
MboII	GAAGA	6 cut(s)	662, 683, 776, 1022, 1044, 1108
MfeI	CAATTG	1 cut(s)	569
MhlI	GDGCHC	2 cut(s)	117, 901
MluCI	AATT	9 cut(s)	217, 318, 569, 581, 623, 667, 826, 911, 946
MlyI	GAGTC	2 cut(s)	722, 1078
MmeI	TCCRAC	1 cut(s)	58
MroXI	GAANNNNTTC	2 cut(s)	140, 1100
MseI	TTAA	2 cut(s)	375, 792
MslI	CAYNNNNRTG	1 cut(s)	393
MspI	CCGG	2 cut(s)	127, 159
MspR9I	CCNGG	6 cut(s)	22, 548, 696, 738, 972, 1066
MunI	CAATTG	1 cut(s)	569
MvaI	CCWGG	6 cut(s)	22, 548, 696, 738, 972, 1066
MvnI	CGCG	1 cut(s)	331
MwoI	GCNNNNNNNGC	2 cut(s)	306, 896
NdeII	GATC	1 cut(s)	168
NlaIII	CATG	6 cut(s)	136, 392, 421, 458, 647, 1045
NlaIV	GGNNCC	5 cut(s)	255, 432, 658, 898, 964
NmuCI	GTSAC	1 cut(s)	16
NruI	TCGCGA	1 cut(s)	331
NspI	RCATGY	1 cut(s)	1045
PasI	CCCWGGG	1 cut(s)	547
PciI	ACATGT	1 cut(s)	1041
PdmI	GAANNNNTTC	2 cut(s)	140, 1100
PfeI	GAWTC	6 cut(s)	106, 751, 985, 998, 1049, 1101
Pfl23II	CGTACG	1 cut(s)	744
PfoI	TCCNGGA	2 cut(s)	694, 1064
PinAI	ACCGGT	1 cut(s)	126
PkrI	GCNGC	4 cut(s)	253, 311, 565, 631
PleI	GAGTC	2 cut(s)	722, 1077
PpsI	GAGTC	2 cut(s)	722, 1077
PscI	ACATGT	1 cut(s)	1041
PsiI	TTATAA	2 cut(s)	324, 936
Psp6I	CCWGG	6 cut(s)	20, 546, 694, 736, 970, 1064
PspEI	GGTNACC	1 cut(s)	16
PspFI	CCCAGC	1 cut(s)	272
PspGI	CCWGG	6 cut(s)	20, 546, 694, 736, 970, 1064
PspLI	CGTACG	1 cut(s)	744
PspN4I	GGNNCC	5 cut(s)	255, 432, 658, 898, 964
PspPI	GGNCC	3 cut(s)	129, 656, 740
PsrI	GAACNNNNNNTAC	2 cut(s)	375, 407
PstNI	CAGNNNCTG	1 cut(s)	1015
RruI	TCGCGA	1 cut(s)	331
RsaI	GTAC	4 cut(s)	125, 152, 746, 840
RsaNI	GTAC	4 cut(s)	124, 151, 745, 839
RseI	CAYNNNNRTG	1 cut(s)	393
SaqAI	TTAA	2 cut(s)	375, 792
SatI	GCNGC	4 cut(s)	252, 310, 564, 630
Sau3AI	GATC	1 cut(s)	168
Sau96I	GGNCC	3 cut(s)	129, 656, 740
ScaI	AGTACT	1 cut(s)	152
SchI	GAGTC	2 cut(s)	722, 1078
ScrFI	CCNGG	6 cut(s)	22, 548, 696, 738, 972, 1066
SduI	GDGCHC	2 cut(s)	117, 901
SfaNI	GCATC	1 cut(s)	480
SinI	GGWCC	2 cut(s)	129, 656
SmiMI	CAYNNNNRTG	1 cut(s)	393
Sse9I	AATT	9 cut(s)	217, 318, 569, 581, 623, 667, 826, 911, 946
SsiI	CCGC	2 cut(s)	251, 310
SspMI	CTAG	2 cut(s)	575, 773
StyD4I	CCNGG	6 cut(s)	20, 546, 694, 736, 970, 1064
TaaI	ACNGT	2 cut(s)	16, 373
TaqI	TCGA	4 cut(s)	66, 438, 505, 784
TaqII	GACCGA	1 cut(s)	542
TasI	AATT	9 cut(s)	217, 318, 569, 581, 623, 667, 826, 911, 946
TatI	WGTACW	2 cut(s)	150, 838
TauI	GCSGC	2 cut(s)	254, 312
TfiI	GAWTC	6 cut(s)	106, 751, 985, 998, 1049, 1101
Tru1I	TTAA	2 cut(s)	375, 792
Tru9I	TTAA	2 cut(s)	375, 792
TscAI	CASTG	1 cut(s)	623
TseFI	GTSAC	1 cut(s)	16
TseI	GCWGC	2 cut(s)	563, 629
Tsp45I	GTSAC	1 cut(s)	16
TspDTI	ATGAA	3 cut(s)	149, 181, 777
TspGWI	ACGGA	2 cut(s)	255, 491
TspRI	CASTG	1 cut(s)	623
VpaK11BI	GGWCC	2 cut(s)	129, 656
XapI	RAATTY	5 cut(s)	318, 623, 667, 826, 911
XceI	RCATGY	1 cut(s)	1045
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1113
XmnI	GAANNNNTTC	2 cut(s)	140, 1100
XspI	CTAG	2 cut(s)	575, 773
ZrmI	AGTACT	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.