Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0002005

Physical Location & Seq

Genomic Coordinates Reverse (-)

49989457 .. 49997723

Gene Structure 8267 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G023940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGAGAGCTTCGAGTGAATTCGATTCCATCGGTTTGGCTGTGAGGAATGAGAAGGATTTGGAGAGCTTGAGTGTGCCCCCCAAGTACCGGTCCATGAACTCCTTCTGGAAGTACTATTCCGGCGAGGAGATCGCTCCCTACCCCACCATATTCATCGTCAAGTTCGGAAACCTTCGCATTGGTGGCCTCTCTGGAATTTATAAGTCGCGAGACTTCGTTCAGGACACTATTAGAGGCTCTGTATATCATGTTCGTGAGTATGATGTCCACAAACTCATGCAAGTTGAGGAACCAATCGATATTTTTCTTTCACATGATTGGCCTCTTGGCATCACGGATTGTGGGGACTGGAAGCAACTTGTTCGATACAAACCTCATTTTGAGACCGAGGTTCGGGAAAGAACCCTGGGAAGTAAACCTGCTGCTCAATTGCTAGAAAAATTGAAACCACCCTATTGGTTTTCAGCTCATCTACACTGCAAATTTGCTGCTCGTGTTCAGCATGGGGAAGATGGTCCCGTGACGAATTTTCTTGCTCTTGATAAGTGTCTTCCTGGAAAGAAGTTCTTGATATTGACTCAGAGCCAGATTCAGTATGATGAAGAATGGCTAGAAATAACTCGAAGGTTTAACCCCATTTTCCCTCTCACAATCAGGAGTGCAAATTTCAGGAGTAAGCTACAAGCAAGAGAAGCCCGACTTTTTGAATTCAGCCAGACAGCTCCATCTTATAATCCCTCTAATTCTGTCTCAAATGGCTCCTCGCCTGAATCTTCGGAAGTATCCAGGAGTCCTTTTCCATCAAGCGATAGAGATGACAGCAAAGAGATTCCCATTGATGATGTGGATGAGTTAGAAGACCTTACTGAAGAGGCTGGAGATGCTGAACATGAAGATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0008419 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DBR1 Metallophos peroxidase

Protein Analysis

300

Amino Acids

34.42

Weight (kDa)

5.23

Isoelectric Point (pI)

47.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DBR1	PF05011	174 - 231	3.5e-11	Lariat debranching enzyme, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002005)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31770 AT4G31770
fragaria_vesca	FvH4_2g41360 FvH4_6g29560
malus_domestica	MD08G1051300.v1.1 MD13G1228500.v1.1 MD15G1043800.v1.1
prunus_persica	Prupe.1G397300_v2.0.a1 Prupe.1G397300_v2.0.a1 Prupe.1G397300_v2.0.a1 Prupe.1G397300_v2.0.a1 Prupe.1G397300_v2.0.a1 Prupe.1G397300_v2.0.a1
pyrus_communis	pycom15g04070
rosa_chinensis	RchiOBHm_Chr1g0357361 RchiOBHm_Chr2g0135121 RchiOBHm_Chr6g0299131
rosa_laevigata	RLG00000011460 RLG00000019443 RLG00000028022
rosa_multiflora	Rmu_co8086444.1_g000001 Rmu_sc0001385.1_g000017 Rmu_sc0001434.1_g000018 Rmu_sc0003543.1_g000005
rosa_roxburghii	Rroxscaffold_2G00109470 Rroxscaffold_7G00168980
rosa_rugosa	Rorug01G0256500 Rorug02G0323300 Rorug06G0285600
rosa_samantha	Rh1AG270400 Rh1CG254100 Rh1CG254200 Rh2AG371700 Rh2BG379800 Rh2CG358900 Rh2DG396400 Rh6AG396600 Rh6BG404800 Rh6BG405000 Rh6CG411100 Rh6DG397800
rosa_wichuraiana	Rw0G013580 Rw1G023910 Rw1G023940 Rw6G034720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	201, 732
Acc36I	ACCTGC	1 cut(s)	427
AccII	CGCG	1 cut(s)	208
AcsI	RAATTY	6 cut(s)	17, 195, 482, 526, 664, 707
AcuI	CTGAAG	1 cut(s)	888
AfaI	GTAC	2 cut(s)	86, 113
AfiI	CCNNNNNNNGG	2 cut(s)	87, 393
AgeI	ACCGGT	1 cut(s)	87
AgsI	TTSAA	2 cut(s)	445, 707
AjnI	CCWGG	3 cut(s)	405, 553, 785
AluBI	AGCT	5 cut(s)	8, 66, 467, 679, 722
AluI	AGCT	5 cut(s)	8, 66, 467, 679, 722
Alw26I	GTCTC	3 cut(s)	204, 377, 754
AoxI	GGCC	2 cut(s)	184, 320
ApeKI	GCWGC	2 cut(s)	422, 488
ApoI	RAATTY	6 cut(s)	17, 195, 482, 526, 664, 707
AsiGI	ACCGGT	1 cut(s)	87
Asp700I	GAANNNNTTC	1 cut(s)	101
AspS9I	GGNCC	2 cut(s)	90, 515
AvaII	GGWCC	2 cut(s)	90, 515
BaeGI	GKGCMC	1 cut(s)	78
BauI	CACGAG	1 cut(s)	492
BbsI	GAAGAC	2 cut(s)	542, 864
BbvI	GCAGC	2 cut(s)	409, 475
BccI	CCATC	4 cut(s)	35, 506, 733, 808
BcgI	CGANNNNNNTGC	2 cut(s)	344, 378
BciT130I	CCWGG	3 cut(s)	407, 555, 787
BciVI	GTATCC	1 cut(s)	793
BcoDI	GTCTC	3 cut(s)	204, 377, 754
BfaI	CTAG	2 cut(s)	434, 611
BfuAI	ACCTGC	1 cut(s)	427
BfuI	GTATCC	1 cut(s)	793
BisI	GCNGC	2 cut(s)	423, 489
BlsI	GCNGC	2 cut(s)	424, 490
BmcAI	AGTACT	1 cut(s)	113
Bme1390I	CCNGG	3 cut(s)	407, 555, 787
Bme18I	GGWCC	2 cut(s)	90, 515
BmgT120I	GGNCC	2 cut(s)	90, 515
BmiI	GGNNCC	3 cut(s)	291, 517, 760
BmrFI	CCNGG	3 cut(s)	407, 555, 787
BmsI	GCATC	2 cut(s)	339, 871
BpiI	GAAGAC	2 cut(s)	542, 864
BpmI	CTGGAG	1 cut(s)	897
BpuEI	CTTGAG	1 cut(s)	88
Bsa29I	ATCGAT	1 cut(s)	297
BsaI	GGTCTC	1 cut(s)	377
BsaJI	CCNNGG	3 cut(s)	387, 405, 406
BsaWI	WCCGGW	1 cut(s)	87
Bsc4I	CCNNNNNNNGG	2 cut(s)	87, 393
Bse118I	RCCGGY	1 cut(s)	87
Bse1I	ACTGG	1 cut(s)	353
BseBI	CCWGG	3 cut(s)	407, 555, 787
BseCI	ATCGAT	1 cut(s)	297
BseDI	CCNNGG	3 cut(s)	387, 405, 406
BseGI	GGATG	1 cut(s)	853
BseLI	CCNNNNNNNGG	2 cut(s)	87, 393
BseMII	CTCAG	1 cut(s)	593
BseNI	ACTGG	1 cut(s)	353
BseRI	GAGGAG	2 cut(s)	140, 751
BseSI	GKGCMC	1 cut(s)	78
BseXI	GCAGC	2 cut(s)	409, 475
Bsh1236I	CGCG	1 cut(s)	208
BshFI	GGCC	2 cut(s)	186, 322
BshTI	ACCGGT	1 cut(s)	87
BshVI	ATCGAT	1 cut(s)	297
BsiSI	CCGG	2 cut(s)	88, 120
BslFI	GGGAC	2 cut(s)	359, 501
BslI	CCNNNNNNNGG	2 cut(s)	87, 393
BsmAI	GTCTC	3 cut(s)	204, 377, 754
BsmFI	GGGAC	2 cut(s)	359, 501
BsnI	GGCC	2 cut(s)	186, 322
Bso31I	GGTCTC	1 cut(s)	377
Bsp1286I	GDGCHC	1 cut(s)	78
Bsp143I	GATC	1 cut(s)	129
Bsp68I	TCGCGA	1 cut(s)	208
BspANI	GGCC	2 cut(s)	186, 322
BspCNI	CTCAG	1 cut(s)	592
BspDI	ATCGAT	1 cut(s)	297
BspFNI	CGCG	1 cut(s)	208
BspLI	GGNNCC	3 cut(s)	291, 517, 760
BspMI	ACCTGC	1 cut(s)	427
BspTNI	GGTCTC	1 cut(s)	377
BsrFI	RCCGGY	1 cut(s)	87
BsrI	ACTGG	1 cut(s)	353
BssAI	RCCGGY	1 cut(s)	87
BssECI	CCNNGG	3 cut(s)	387, 405, 406
BssMI	GATC	1 cut(s)	129
BssSI	CACGAG	1 cut(s)	492
Bst2BI	CACGAG	1 cut(s)	492
Bst2UI	CCWGG	3 cut(s)	407, 555, 787
Bst6I	CTCTTC	1 cut(s)	864
BstDEI	CTNAG	1 cut(s)	579
BstF5I	GGATG	1 cut(s)	853
BstFNI	CGCG	1 cut(s)	208
BstKTI	GATC	1 cut(s)	132
BstMAI	GTCTC	3 cut(s)	204, 377, 754
BstMBI	GATC	1 cut(s)	129
BstMWI	GCNNNNNNNGC	3 cut(s)	183, 692, 881
BstNI	CCWGG	3 cut(s)	407, 555, 787
BstSCI	CCNGG	3 cut(s)	405, 553, 785
BstSLI	GKGCMC	1 cut(s)	78
BstUI	CGCG	1 cut(s)	208
BstV1I	GCAGC	2 cut(s)	409, 475
BstV2I	GAAGAC	2 cut(s)	542, 864
BstXI	CCANNNNNNTGG	2 cut(s)	34, 456
Bsu15I	ATCGAT	1 cut(s)	297
BsuI	GTATCC	1 cut(s)	793
BsuRI	GGCC	2 cut(s)	186, 322
BsuTUI	ATCGAT	1 cut(s)	297
BtsCI	GGATG	1 cut(s)	853
BtsI	GCAGTG	1 cut(s)	475
BtsIMutI	CAGTG	1 cut(s)	475
BtuMI	TCGCGA	1 cut(s)	208
BveI	ACCTGC	1 cut(s)	427
Cfr10I	RCCGGY	1 cut(s)	87
Cfr13I	GGNCC	2 cut(s)	90, 515
ClaI	ATCGAT	1 cut(s)	297
Csp6I	GTAC	2 cut(s)	85, 112
CspAI	ACCGGT	1 cut(s)	87
CviAII	CATG	6 cut(s)	94, 248, 277, 314, 503, 890
CviQI	GTAC	2 cut(s)	85, 112
DdeI	CTNAG	1 cut(s)	579
DpnI	GATC	1 cut(s)	131
DpnII	GATC	1 cut(s)	129
Eam1104I	CTCTTC	1 cut(s)	864
EarI	CTCTTC	1 cut(s)	864
Eco31I	GGTCTC	1 cut(s)	377
Eco47I	GGWCC	2 cut(s)	90, 515
Eco57I	CTGAAG	1 cut(s)	888
EcoRI	GAATTC	2 cut(s)	17, 707
EcoRII	CCWGG	3 cut(s)	405, 553, 785
FaeI	CATG	6 cut(s)	97, 251, 280, 317, 506, 893
FalI	AAGNNNNNCTT	4 cut(s)	551, 583, 684, 716
FaqI	GGGAC	2 cut(s)	359, 501
FatI	CATG	6 cut(s)	93, 247, 276, 313, 502, 889
Fnu4HI	GCNGC	2 cut(s)	423, 489
FokI	GGATG	1 cut(s)	860
Fsp4HI	GCNGC	2 cut(s)	423, 489
FspBI	CTAG	2 cut(s)	434, 611
GluI	GCNGC	2 cut(s)	423, 489
GsuI	CTGGAG	1 cut(s)	897
HaeIII	GGCC	2 cut(s)	186, 322
HapII	CCGG	2 cut(s)	88, 120
Hin1II	CATG	6 cut(s)	97, 251, 280, 317, 506, 893
HinfI	GANTC	6 cut(s)	23, 577, 589, 770, 790, 829
HpaII	CCGG	2 cut(s)	88, 120
Hpy166II	GTNNAC	2 cut(s)	268, 416
Hpy188I	TCNGA	3 cut(s)	167, 582, 778
Hpy8I	GTNNAC	2 cut(s)	268, 416
HpyAV	CCTTC	4 cut(s)	46, 112, 182, 618
HpyCH4V	TGCA	3 cut(s)	280, 480, 662
HpyF10VI	GCNNNNNNNGC	3 cut(s)	183, 692, 881
HpyF3I	CTNAG	1 cut(s)	579
Hsp92II	CATG	6 cut(s)	97, 251, 280, 317, 506, 893
Kzo9I	GATC	1 cut(s)	129
LmnI	GCTCC	3 cut(s)	139, 727, 764
Lsp1109I	GCAGC	2 cut(s)	409, 475
LweI	GCATC	2 cut(s)	339, 871
MaeI	CTAG	2 cut(s)	434, 611
MaeIII	GTNAC	1 cut(s)	520
MalI	GATC	1 cut(s)	131
MboI	GATC	1 cut(s)	129
MboII	GAAGA	6 cut(s)	521, 542, 614, 765, 869, 881
MfeI	CAATTG	1 cut(s)	428
MhlI	GDGCHC	1 cut(s)	78
MluCI	AATT	9 cut(s)	17, 195, 428, 440, 482, 526, 664, 707, 742
MlyI	GAGTC	2 cut(s)	571, 799
MroXI	GAANNNNTTC	1 cut(s)	101
MseI	TTAA	1 cut(s)	630
MslI	CAYNNNNRTG	2 cut(s)	252, 894
MspI	CCGG	2 cut(s)	88, 120
MspR9I	CCNGG	3 cut(s)	407, 555, 787
MunI	CAATTG	1 cut(s)	428
MvaI	CCWGG	3 cut(s)	407, 555, 787
MvnI	CGCG	1 cut(s)	208
MwoI	GCNNNNNNNGC	3 cut(s)	183, 692, 881
NdeII	GATC	1 cut(s)	129
NlaIII	CATG	6 cut(s)	97, 251, 280, 317, 506, 893
NlaIV	GGNNCC	3 cut(s)	291, 517, 760
NmuCI	GTSAC	1 cut(s)	520
NruI	TCGCGA	1 cut(s)	208
PasI	CCCWGGG	1 cut(s)	406
PdmI	GAANNNNTTC	1 cut(s)	101
PfeI	GAWTC	4 cut(s)	23, 589, 770, 829
PfoI	TCCNGGA	2 cut(s)	553, 785
PinAI	ACCGGT	1 cut(s)	87
PkrI	GCNGC	2 cut(s)	424, 490
PleI	GAGTC	2 cut(s)	571, 798
PpsI	GAGTC	2 cut(s)	571, 798
PsiI	TTATAA	2 cut(s)	201, 732
Psp6I	CCWGG	3 cut(s)	405, 553, 785
PspGI	CCWGG	3 cut(s)	405, 553, 785
PspN4I	GGNNCC	3 cut(s)	291, 517, 760
PspPI	GGNCC	2 cut(s)	90, 515
PsrI	GAACNNNNNNTAC	2 cut(s)	234, 266
RruI	TCGCGA	1 cut(s)	208
RsaI	GTAC	2 cut(s)	86, 113
RsaNI	GTAC	2 cut(s)	85, 112
RseI	CAYNNNNRTG	2 cut(s)	252, 894
SaqAI	TTAA	1 cut(s)	630
SatI	GCNGC	2 cut(s)	423, 489
Sau3AI	GATC	1 cut(s)	129
Sau96I	GGNCC	2 cut(s)	90, 515
ScaI	AGTACT	1 cut(s)	113
SchI	GAGTC	2 cut(s)	571, 799
ScrFI	CCNGG	3 cut(s)	407, 555, 787
SduI	GDGCHC	1 cut(s)	78
SfaNI	GCATC	2 cut(s)	339, 871
SinI	GGWCC	2 cut(s)	90, 515
SmiMI	CAYNNNNRTG	2 cut(s)	252, 894
SmlI	CTYRAG	1 cut(s)	67
SmoI	CTYRAG	1 cut(s)	67
Sse9I	AATT	9 cut(s)	17, 195, 428, 440, 482, 526, 664, 707, 742
SspMI	CTAG	2 cut(s)	434, 611
StyD4I	CCNGG	3 cut(s)	405, 553, 785
TaqI	TCGA	5 cut(s)	11, 21, 297, 364, 622
TaqII	GACCGA	1 cut(s)	401
TasI	AATT	9 cut(s)	17, 195, 428, 440, 482, 526, 664, 707, 742
TatI	WGTACW	1 cut(s)	111
TfiI	GAWTC	4 cut(s)	23, 589, 770, 829
Tru1I	TTAA	1 cut(s)	630
Tru9I	TTAA	1 cut(s)	630
TscAI	CASTG	1 cut(s)	482
TseFI	GTSAC	1 cut(s)	520
TseI	GCWGC	2 cut(s)	422, 488
Tsp45I	GTSAC	1 cut(s)	520
TspDTI	ATGAA	3 cut(s)	110, 142, 615
TspGWI	ACGGA	1 cut(s)	350
TspRI	CASTG	1 cut(s)	482
VpaK11BI	GGWCC	2 cut(s)	90, 515
XapI	RAATTY	6 cut(s)	17, 195, 482, 526, 664, 707
XcmI	CCANNNNNNNNNTGG	1 cut(s)	841
XmnI	GAANNNNTTC	1 cut(s)	101
XspI	CTAG	2 cut(s)	434, 611
ZrmI	AGTACT	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.