Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0002005

Physical Location & Seq

Genomic Coordinates Reverse (-)

4069434 .. 4071063

Gene Structure 1630 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1051300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGCGACCTTAAACGTGCCTCGTAAATTCCGGAGCATGAACACATTCTGGAAATACTATTCCGGTGAGGCAGTGGCTCCGTACCCGACCATATTCATCGGCGGCAATCACGAGGCTTCTAATTACTTATGGGAACTGTACTATGGAGGATGGGCAGCACCTAATATATACTTCTTGGGGTCTGCTGGTGTAGTCAAGTTTGGAAATCTTCGAATTGGTGGACTCTCTGGAATTTACAAGCAGCCCGATTTTCTTAAAGCGGGACACTTTGAGAGGCCTCCTTGTAATGGTCATACTATCAGGTCGGTGTATCATGTTCGTGAGTATGATTTCCACAAACTCATGCAAGTTGAGGAACCAATCGATATTTTTCTTTCACATGATTGGCCTGTTGGCATCACTGATTGTGGGGACTGGAAGGAACTTGTTCGGGAAAAACCGGATTTTAAGCAGGAGGTTCAAGAAAGAAGTCTTGGAAGTAAACCAGCTGCTCAATTGCTAGAACTGAAACCACCTTATTGGTTTTCAGCTCATTTACACTGCAAATTTGCTGCTCGTGTTCAACATGGGGAAGATGGTTCAGTGACAAACTTTCTTGCCCTTGATAAGTGCCTACCAGGACGCAAATTTCTTCAGTACCTCACTCCCAAACCAACCATCCCTCAATACGATGAAGAATGGCTAGAAATAACTCGGCGATTTAACTCTATTTTCCCTCTCACAACCAGAAGTGCAAATCTTGGGTGTGTACATTTTTCGAAATGTATTGAGCATGCTGCCAATGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0008419 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DBR1 Metallophos peroxidase

Protein Analysis

263

Amino Acids

30.08

Weight (kDa)

7.67

Isoelectric Point (pI)

35.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DBR1	PF05011	194 - 246	9.3e-13	Lariat debranching enzyme, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002005)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31770 AT4G31770
fragaria_vesca	FvH4_2g41360 FvH4_6g29560
malus_domestica	MD08G1051300.v1.1 MD13G1228500.v1.1 MD15G1043800.v1.1
prunus_persica	Prupe.1G397300_v2.0.a1 Prupe.1G397300_v2.0.a1 Prupe.1G397300_v2.0.a1 Prupe.1G397300_v2.0.a1 Prupe.1G397300_v2.0.a1 Prupe.1G397300_v2.0.a1
pyrus_communis	pycom15g04070
rosa_chinensis	RchiOBHm_Chr1g0357361 RchiOBHm_Chr2g0135121 RchiOBHm_Chr6g0299131
rosa_laevigata	RLG00000011460 RLG00000019443 RLG00000028022
rosa_multiflora	Rmu_co8086444.1_g000001 Rmu_sc0001385.1_g000017 Rmu_sc0001434.1_g000018 Rmu_sc0003543.1_g000005
rosa_roxburghii	Rroxscaffold_2G00109470 Rroxscaffold_7G00168980
rosa_rugosa	Rorug01G0256500 Rorug02G0323300 Rorug06G0285600
rosa_samantha	Rh1AG270400 Rh1CG254100 Rh1CG254200 Rh2AG371700 Rh2BG379800 Rh2CG358900 Rh2DG396400 Rh6AG396600 Rh6BG404800 Rh6BG405000 Rh6CG411100 Rh6DG397800
rosa_wichuraiana	Rw0G013580 Rw1G023910 Rw1G023940 Rw6G034720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	30
AciI	CCGC	2 cut(s)	102, 260
AcsI	RAATTY	4 cut(s)	26, 231, 545, 626
AcuI	CTGAAG	1 cut(s)	617
AfaI	GTAC	4 cut(s)	83, 140, 638, 750
AfiI	CCNNNNNNNGG	1 cut(s)	287
AgsI	TTSAA	2 cut(s)	461, 563
AjnI	CCWGG	1 cut(s)	616
AjuI	GAANNNNNNNTTGG	2 cut(s)	456, 488
AluBI	AGCT	2 cut(s)	488, 530
AluI	AGCT	2 cut(s)	488, 530
Aor13HI	TCCGGA	1 cut(s)	30
AoxI	GGCC	2 cut(s)	275, 386
ApeKI	GCWGC	5 cut(s)	155, 241, 488, 551, 776
ApoI	RAATTY	4 cut(s)	26, 231, 545, 626
Asp700I	GAANNNNTTC	2 cut(s)	44, 426
AsuHPI	GGTGA	1 cut(s)	77
AsuII	TTCGAA	2 cut(s)	211, 758
BauI	CACGAG	2 cut(s)	110, 555
BbvI	GCAGC	5 cut(s)	167, 253, 475, 538, 763
BccI	CCATC	3 cut(s)	144, 569, 665
BciT130I	CCWGG	1 cut(s)	618
BfaI	CTAG	2 cut(s)	500, 683
BisI	GCNGC	6 cut(s)	103, 156, 242, 489, 552, 777
BlsI	GCNGC	6 cut(s)	104, 157, 243, 490, 553, 778
Bme1390I	CCNGG	1 cut(s)	618
BmiI	GGNNCC	2 cut(s)	78, 357
BmrFI	CCNGG	1 cut(s)	618
BmsI	GCATC	1 cut(s)	405
Bpu14I	TTCGAA	2 cut(s)	211, 758
Bsa29I	ATCGAT	1 cut(s)	363
BsaWI	WCCGGW	3 cut(s)	30, 62, 439
Bsc4I	CCNNNNNNNGG	1 cut(s)	287
Bse1I	ACTGG	1 cut(s)	419
BseAI	TCCGGA	1 cut(s)	30
BseBI	CCWGG	1 cut(s)	618
BseCI	ATCGAT	1 cut(s)	363
BseGI	GGATG	2 cut(s)	155, 657
BseLI	CCNNNNNNNGG	1 cut(s)	287
BseNI	ACTGG	1 cut(s)	419
BseXI	GCAGC	5 cut(s)	167, 253, 475, 538, 763
BshFI	GGCC	2 cut(s)	277, 388
BshVI	ATCGAT	1 cut(s)	363
BsiSI	CCGG	3 cut(s)	31, 63, 440
BslFI	GGGAC	2 cut(s)	276, 425
BslI	CCNNNNNNNGG	1 cut(s)	287
BsmFI	GGGAC	2 cut(s)	276, 425
BsnI	GGCC	2 cut(s)	277, 388
Bsp119I	TTCGAA	2 cut(s)	211, 758
Bsp13I	TCCGGA	1 cut(s)	30
Bsp1407I	TGTACA	1 cut(s)	748
BspACI	CCGC	2 cut(s)	102, 260
BspANI	GGCC	2 cut(s)	277, 388
BspDI	ATCGAT	1 cut(s)	363
BspEI	TCCGGA	1 cut(s)	30
BspLI	GGNNCC	2 cut(s)	78, 357
BspT104I	TTCGAA	2 cut(s)	211, 758
BsrGI	TGTACA	1 cut(s)	748
BsrI	ACTGG	1 cut(s)	419
BssSI	CACGAG	2 cut(s)	110, 555
Bst2BI	CACGAG	2 cut(s)	110, 555
Bst2UI	CCWGG	1 cut(s)	618
Bst4CI	ACNGT	1 cut(s)	138
BstAUI	TGTACA	1 cut(s)	748
BstBI	TTCGAA	2 cut(s)	211, 758
BstC8I	GCNNGC	1 cut(s)	774
BstF5I	GGATG	2 cut(s)	155, 657
BstNI	CCWGG	1 cut(s)	618
BstNSI	RCATGY	1 cut(s)	776
BstSCI	CCNGG	1 cut(s)	616
BstV1I	GCAGC	5 cut(s)	167, 253, 475, 538, 763
BstXI	CCANNNNNNTGG	1 cut(s)	519
Bsu15I	ATCGAT	1 cut(s)	363
BsuRI	GGCC	2 cut(s)	277, 388
BsuTUI	ATCGAT	1 cut(s)	363
BtsCI	GGATG	2 cut(s)	155, 657
BtsI	GCAGTG	2 cut(s)	78, 538
BtsIMutI	CAGTG	4 cut(s)	78, 399, 538, 588
Cac8I	GCNNGC	1 cut(s)	774
ClaI	ATCGAT	1 cut(s)	363
CseI	GACGC	1 cut(s)	630
Csp6I	GTAC	4 cut(s)	82, 139, 637, 749
CviAII	CATG	6 cut(s)	37, 314, 343, 380, 566, 773
CviJI	RGCY	8 cut(s)	77, 116, 244, 277, 388, 488, 530, 682
CviKI_1	RGCY	8 cut(s)	77, 116, 244, 277, 388, 488, 530, 682
CviQI	GTAC	4 cut(s)	82, 139, 637, 749
Eco147I	AGGCCT	1 cut(s)	277
Eco57I	CTGAAG	1 cut(s)	617
EcoRII	CCWGG	1 cut(s)	616
FaeI	CATG	6 cut(s)	40, 317, 346, 383, 569, 776
FaqI	GGGAC	2 cut(s)	276, 425
FatI	CATG	6 cut(s)	36, 313, 342, 379, 565, 772
FauI	CCCGC	1 cut(s)	253
Fnu4HI	GCNGC	6 cut(s)	103, 156, 242, 489, 552, 777
FokI	GGATG	2 cut(s)	162, 644
Fsp4HI	GCNGC	6 cut(s)	103, 156, 242, 489, 552, 777
FspBI	CTAG	2 cut(s)	500, 683
GluI	GCNGC	6 cut(s)	103, 156, 242, 489, 552, 777
HaeIII	GGCC	2 cut(s)	277, 388
HapII	CCGG	3 cut(s)	31, 63, 440
HgaI	GACGC	1 cut(s)	630
Hin1II	CATG	6 cut(s)	40, 317, 346, 383, 569, 776
HinfI	GANTC	1 cut(s)	222
HpaII	CCGG	3 cut(s)	31, 63, 440
HphI	GGTGA	1 cut(s)	77
Hpy166II	GTNNAC	3 cut(s)	221, 482, 749
Hpy188III	TCNNGA	7 cut(s)	31, 49, 110, 228, 320, 431, 461
Hpy8I	GTNNAC	3 cut(s)	221, 482, 749
HpyAV	CCTTC	1 cut(s)	412
HpyCH4III	ACNGT	1 cut(s)	138
HpyCH4IV	ACGT	1 cut(s)	15
HpyCH4V	TGCA	3 cut(s)	346, 543, 734
HpySE526I	ACGT	1 cut(s)	15
Hsp92II	CATG	6 cut(s)	40, 317, 346, 383, 569, 776
Kpn2I	TCCGGA	1 cut(s)	30
LmnI	GCTCC	2 cut(s)	33, 82
Lsp1109I	GCAGC	5 cut(s)	167, 253, 475, 538, 763
LweI	GCATC	1 cut(s)	405
MaeI	CTAG	2 cut(s)	500, 683
MaeII	ACGT	1 cut(s)	15
MaeIII	GTNAC	1 cut(s)	583
MboII	GAAGA	4 cut(s)	200, 584, 623, 686
MfeI	CAATTG	1 cut(s)	494
MluCI	AATT	7 cut(s)	26, 121, 213, 231, 494, 545, 626
MlyI	GAGTC	1 cut(s)	216
MroI	TCCGGA	1 cut(s)	30
MroXI	GAANNNNTTC	2 cut(s)	44, 426
MseI	TTAA	4 cut(s)	11, 255, 447, 702
MslI	CAYNNNNRTG	1 cut(s)	318
MspA1I	CMGCKG	1 cut(s)	488
MspI	CCGG	3 cut(s)	31, 63, 440
MspR9I	CCNGG	1 cut(s)	618
MunI	CAATTG	1 cut(s)	494
MvaI	CCWGG	1 cut(s)	618
NlaIII	CATG	6 cut(s)	40, 317, 346, 383, 569, 776
NlaIV	GGNNCC	2 cut(s)	78, 357
NmeAIII	GCCGAG	1 cut(s)	673
NmuCI	GTSAC	1 cut(s)	583
NspI	RCATGY	1 cut(s)	776
NspV	TTCGAA	2 cut(s)	211, 758
PaeI	GCATGC	1 cut(s)	776
PceI	AGGCCT	1 cut(s)	277
PdmI	GAANNNNTTC	2 cut(s)	44, 426
PkrI	GCNGC	6 cut(s)	104, 157, 243, 490, 553, 778
PleI	GAGTC	1 cut(s)	216
PpsI	GAGTC	1 cut(s)	216
Psp6I	CCWGG	1 cut(s)	616
PspGI	CCWGG	1 cut(s)	616
PspN4I	GGNNCC	2 cut(s)	78, 357
PvuII	CAGCTG	1 cut(s)	488
RsaI	GTAC	4 cut(s)	83, 140, 638, 750
RsaNI	GTAC	4 cut(s)	82, 139, 637, 749
RseI	CAYNNNNRTG	1 cut(s)	318
SaqAI	TTAA	4 cut(s)	11, 255, 447, 702
SatI	GCNGC	6 cut(s)	103, 156, 242, 489, 552, 777
SchI	GAGTC	1 cut(s)	216
ScrFI	CCNGG	1 cut(s)	618
SetI	ASST	9 cut(s)	11, 18, 163, 305, 459, 490, 517, 532, 642
SfaNI	GCATC	1 cut(s)	405
SfuI	TTCGAA	2 cut(s)	211, 758
SmiMI	CAYNNNNRTG	1 cut(s)	318
SphI	GCATGC	1 cut(s)	776
Sse9I	AATT	7 cut(s)	26, 121, 213, 231, 494, 545, 626
SseBI	AGGCCT	1 cut(s)	277
SsiI	CCGC	2 cut(s)	102, 260
SspMI	CTAG	2 cut(s)	500, 683
StuI	AGGCCT	1 cut(s)	277
StyD4I	CCNGG	1 cut(s)	616
TaaI	ACNGT	1 cut(s)	138
TaiI	ACGT	1 cut(s)	18
TaqI	TCGA	3 cut(s)	211, 363, 758
TasI	AATT	7 cut(s)	26, 121, 213, 231, 494, 545, 626
TatI	WGTACW	2 cut(s)	138, 748
TauI	GCSGC	1 cut(s)	105
Tru1I	TTAA	4 cut(s)	11, 255, 447, 702
Tru9I	TTAA	4 cut(s)	11, 255, 447, 702
TscAI	CASTG	4 cut(s)	78, 406, 545, 588
TseFI	GTSAC	1 cut(s)	583
TseI	GCWGC	5 cut(s)	155, 241, 488, 551, 776
Tsp45I	GTSAC	1 cut(s)	583
TspDTI	ATGAA	3 cut(s)	53, 85, 687
TspGWI	ACGGA	1 cut(s)	69
TspRI	CASTG	4 cut(s)	78, 406, 545, 588
XapI	RAATTY	4 cut(s)	26, 231, 545, 626
XceI	RCATGY	1 cut(s)	776
XmnI	GAANNNNTTC	2 cut(s)	44, 426
XspI	CTAG	2 cut(s)	500, 683

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.