Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003240

Physical Location & Seq

Genomic Coordinates Forward (+)

15583332 .. 15584903

Gene Structure 1572 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G32280.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGAGTTGGATCTTGGTCTATCTCTTTCACCTCATAAATCTTCCAAGTTAGGGTTTAACTTTGACCTCAACAAGCATTGTGCGATCGAGGGTGCTGCGTCTTGTTTGGGTACCGAAAAACTGCGTTTTGAGGCGACGTTTGGGTTAGGGAATGTGGAGGAAAATTGTTATATGCCAAAACAGCGTTTGTTTGCCTTGAATGGCCAGCCCAACGAGGAAGACGAAGATCCTCTGGAATCCGAGTCTTCAATAGTTTACGATGATGAGGAGGAAAATAGCGAAGTTGTTGGATGGCCACCAGTAAAAACATGTATGATAAAGTATGGTAGTTATCATCATCGTCATATTCGTAATCACCATCATTGCCCGTATCATCATCGTGGTAGGAGGATCACGGCGATGAACAACAACATATCTAATCCAACAACGGCTACTGTGGGATCATCATCTTCTTCGTCAATATCATCAAGATCATCAATGTATGTTAAGGTTAAGATGGATGGTGTGGCAATAGCAAGAAAAGTGGATATCAAGCTTTTTAACTCTTACGAGTCCCTCACTAACTCCTTGATCACTATGTTTACCGAATATGAAGATTGCGACAGAGAAGATACAAATTATACATTCACCTTCCAAGGGAAAGAGGGTGACTGGCTACTTCGAGGGGATGTTACATGGAAGATCTTTGCGGAATCTGTTCATCGGATATCAATAATTAGAGATCGACCGTGTGCATATACAAGATGTTTGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010114 GO:0010218 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

251

Amino Acids

28.61

Weight (kDa)

5.88

Isoelectric Point (pI)

54.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	98 - 199	1.5e-21	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003240)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32280 AT4G32280 AT4G32280
fragaria_vesca	FvH4_1g02700 FvH4_2g28970
malus_domestica	MD02G1027600.v1.1 MD08G1151300.v1.1 MD15G1169100.v1.1
prunus_persica	Prupe.1G481700_v2.0.a1 Prupe.1G481700_v2.0.a1 Prupe.1G481700_v2.0.a1 Prupe.7G247500_v2.0.a1
pyrus_communis	pycom02g02260 pycom08g12740 pycom15g15080
rosa_chinensis	RchiOBHm_Chr2g0087791 RchiOBHm_Chr6g0297821
rosa_laevigata	RLG00000011558 RLG00000015900
rosa_multiflora	Rmu_co8358427.1_g000001 Rmu_sc0003137.1_g000004 Rmu_sc0008385.1_g000003
rosa_roxburghii	Rroxscaffold_2G00153220 Rroxscaffold_7G00170170 Rroxscaffold_7G00179020
rosa_rugosa	Rorug01G0478700 Rorug06G0275700
rosa_samantha	Rh2AG033100 Rh2BG032200 Rh2CG032900 Rh2DG032700 Rh6AG386400 Rh6BG395000 Rh6CG400700 Rh6DG387100
rosa_wichuraiana	Rw2G002580 Rw6G033680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	110
AccB1I	GGYRCC	1 cut(s)	110
AciI	CCGC	1 cut(s)	689
AclWI	GGATC	4 cut(s)	18, 221, 398, 448
AcoI	YGGCCR	2 cut(s)	202, 293
AfaI	GTAC	1 cut(s)	112
AfiI	CCNNNNNNNGG	2 cut(s)	51, 636
AflIII	ACRYGT	1 cut(s)	308
AgsI	TTSAA	2 cut(s)	199, 249
AluBI	AGCT	1 cut(s)	535
AluI	AGCT	1 cut(s)	535
AlwI	GGATC	4 cut(s)	18, 221, 398, 448
AoxI	GGCC	2 cut(s)	202, 293
ApeKI	GCWGC	1 cut(s)	95
Asp700I	GAANNNNTTC	1 cut(s)	696
Asp718I	GGTACC	1 cut(s)	110
AsuHPI	GGTGA	4 cut(s)	21, 347, 619, 659
BalI	TGGCCA	2 cut(s)	204, 295
BanI	GGYRCC	1 cut(s)	110
BbsI	GAAGAC	2 cut(s)	225, 237
BbvI	GCAGC	1 cut(s)	82
BccI	CCATC	4 cut(s)	285, 366, 490, 494
BceAI	ACGGC	2 cut(s)	411, 444
BcgI	CGANNNNNNTGC	2 cut(s)	77, 111
BclI	TGATCA	1 cut(s)	570
BglII	AGATCT	1 cut(s)	681
BisI	GCNGC	1 cut(s)	96
BlsI	GCNGC	1 cut(s)	97
BmiI	GGNNCC	1 cut(s)	112
BpiI	GAAGAC	2 cut(s)	225, 237
BsaBI	GATNNNNATC	1 cut(s)	445
BsaJI	CCNNGG	1 cut(s)	634
Bsc4I	CCNNNNNNNGG	2 cut(s)	51, 636
Bse1I	ACTGG	2 cut(s)	299, 656
Bse3DI	GCAATG	1 cut(s)	361
Bse8I	GATNNNNATC	1 cut(s)	445
BseDI	CCNNGG	1 cut(s)	634
BseGI	GGATG	3 cut(s)	296, 505, 673
BseJI	GATNNNNATC	1 cut(s)	445
BseLI	CCNNNNNNNGG	2 cut(s)	51, 636
BseMI	GCAATG	1 cut(s)	361
BseNI	ACTGG	2 cut(s)	299, 656
BseRI	GAGGAG	1 cut(s)	281
BseXI	GCAGC	1 cut(s)	82
Bsh1285I	CGRYCG	2 cut(s)	87, 728
BshFI	GGCC	2 cut(s)	204, 295
BshNI	GGYRCC	1 cut(s)	110
BsiEI	CGRYCG	2 cut(s)	87, 728
BslFI	GGGAC	1 cut(s)	538
BslI	CCNNNNNNNGG	2 cut(s)	51, 636
BsmFI	GGGAC	1 cut(s)	538
BsnI	GGCC	2 cut(s)	204, 295
Bsp143I	GATC	9 cut(s)	10, 84, 226, 390, 440, 470, 570, 681, 721
BspACI	CCGC	1 cut(s)	689
BspANI	GGCC	2 cut(s)	204, 295
BspLI	GGNNCC	1 cut(s)	112
BspPI	GGATC	4 cut(s)	18, 221, 398, 448
BspT107I	GGYRCC	1 cut(s)	110
BsrDI	GCAATG	1 cut(s)	361
BsrI	ACTGG	2 cut(s)	299, 656
BssECI	CCNNGG	1 cut(s)	634
BssMI	GATC	9 cut(s)	10, 84, 226, 390, 440, 470, 570, 681, 721
BssT1I	CCWWGG	1 cut(s)	634
Bst4CI	ACNGT	2 cut(s)	436, 729
BstC8I	GCNNGC	1 cut(s)	206
BstF5I	GGATG	3 cut(s)	296, 505, 673
BstKTI	GATC	9 cut(s)	13, 87, 229, 393, 443, 473, 573, 684, 724
BstMBI	GATC	9 cut(s)	10, 84, 226, 390, 440, 470, 570, 681, 721
BstMCI	CGRYCG	2 cut(s)	87, 728
BstMWI	GCNNNNNNNGC	1 cut(s)	181
BstNSI	RCATGY	1 cut(s)	312
BstV1I	GCAGC	1 cut(s)	82
BstV2I	GAAGAC	2 cut(s)	225, 237
BstX2I	RGATCY	3 cut(s)	10, 226, 681
BstYI	RGATCY	3 cut(s)	10, 226, 681
BsuRI	GGCC	2 cut(s)	204, 295
BtgZI	GCGATG	1 cut(s)	413
BtsCI	GGATG	3 cut(s)	296, 505, 673
Cac8I	GCNNGC	1 cut(s)	206
CseI	GACGC	1 cut(s)	87
Csp6I	GTAC	1 cut(s)	111
CspCI	CAANNNNNGTGG	2 cut(s)	504, 539
CviAII	CATG	2 cut(s)	309, 675
CviJI	RGCY	6 cut(s)	204, 208, 295, 431, 535, 655
CviKI_1	RGCY	6 cut(s)	204, 208, 295, 431, 535, 655
CviQI	GTAC	1 cut(s)	111
DpnI	GATC	9 cut(s)	12, 86, 228, 392, 442, 472, 572, 683, 723
DpnII	GATC	9 cut(s)	10, 84, 226, 390, 440, 470, 570, 681, 721
EaeI	YGGCCR	2 cut(s)	202, 293
Eco130I	CCWWGG	1 cut(s)	634
Eco32I	GATATC	2 cut(s)	529, 708
EcoRV	GATATC	2 cut(s)	529, 708
EcoT14I	CCWWGG	1 cut(s)	634
ErhI	CCWWGG	1 cut(s)	634
FaeI	CATG	2 cut(s)	312, 678
FaqI	GGGAC	1 cut(s)	538
FatI	CATG	2 cut(s)	308, 674
FbaI	TGATCA	1 cut(s)	570
Fnu4HI	GCNGC	1 cut(s)	96
FokI	GGATG	3 cut(s)	303, 512, 680
Fsp4HI	GCNGC	1 cut(s)	96
GluI	GCNGC	1 cut(s)	96
HaeIII	GGCC	2 cut(s)	204, 295
HgaI	GACGC	1 cut(s)	87
Hin1II	CATG	2 cut(s)	312, 678
HindIII	AAGCTT	1 cut(s)	533
HinfI	GANTC	4 cut(s)	236, 242, 551, 692
HphI	GGTGA	4 cut(s)	21, 347, 619, 659
Hpy166II	GTNNAC	2 cut(s)	256, 582
Hpy188I	TCNGA	2 cut(s)	241, 705
Hpy188III	TCNNGA	2 cut(s)	233, 468
Hpy8I	GTNNAC	2 cut(s)	256, 582
Hpy99I	CGWCG	1 cut(s)	139
HpyAV	CCTTC	1 cut(s)	640
HpyCH4III	ACNGT	2 cut(s)	436, 729
HpyCH4IV	ACGT	1 cut(s)	137
HpyCH4V	TGCA	1 cut(s)	734
HpyF10VI	GCNNNNNNNGC	1 cut(s)	181
HpySE526I	ACGT	1 cut(s)	137
Hsp92II	CATG	2 cut(s)	312, 678
KpnI	GGTACC	1 cut(s)	114
Ksp22I	TGATCA	1 cut(s)	570
Kzo9I	GATC	9 cut(s)	10, 84, 226, 390, 440, 470, 570, 681, 721
LpnPI	CCDG	4 cut(s)	218, 218, 312, 637
Lsp1109I	GCAGC	1 cut(s)	82
MaeII	ACGT	1 cut(s)	137
MaeIII	GTNAC	2 cut(s)	647, 670
MalI	GATC	9 cut(s)	12, 86, 228, 392, 442, 472, 572, 683, 723
MboI	GATC	9 cut(s)	10, 84, 226, 390, 440, 470, 570, 681, 721
MboII	GAAGA	9 cut(s)	33, 230, 236, 237, 441, 444, 605, 620, 691
MflI	RGATCY	3 cut(s)	10, 226, 681
MlsI	TGGCCA	2 cut(s)	204, 295
MluCI	AATT	3 cut(s)	163, 616, 714
MluNI	TGGCCA	2 cut(s)	204, 295
MlyI	GAGTC	2 cut(s)	251, 560
MmeI	TCCRAC	2 cut(s)	268, 446
Mox20I	TGGCCA	2 cut(s)	204, 295
MroXI	GAANNNNTTC	1 cut(s)	696
MscI	TGGCCA	2 cut(s)	204, 295
MseI	TTAA	5 cut(s)	57, 486, 492, 540, 754
MslI	CAYNNNNRTG	2 cut(s)	378, 398
Msp20I	TGGCCA	2 cut(s)	204, 295
MwoI	GCNNNNNNNGC	1 cut(s)	181
NdeII	GATC	9 cut(s)	10, 84, 226, 390, 440, 470, 570, 681, 721
NlaIII	CATG	2 cut(s)	312, 678
NlaIV	GGNNCC	1 cut(s)	112
NmuCI	GTSAC	1 cut(s)	647
NspI	RCATGY	1 cut(s)	312
PciI	ACATGT	1 cut(s)	308
PcsI	WCGNNNNNNNCGW	2 cut(s)	219, 346
PdmI	GAANNNNTTC	1 cut(s)	696
PfeI	GAWTC	2 cut(s)	236, 692
PkrI	GCNGC	1 cut(s)	97
Ple19I	CGATCG	1 cut(s)	87
PleI	GAGTC	2 cut(s)	250, 559
PpsI	GAGTC	2 cut(s)	250, 559
PscI	ACATGT	1 cut(s)	308
PspN4I	GGNNCC	1 cut(s)	112
PsuI	RGATCY	3 cut(s)	10, 226, 681
PvuI	CGATCG	1 cut(s)	87
RsaI	GTAC	1 cut(s)	112
RsaNI	GTAC	1 cut(s)	111
RseI	CAYNNNNRTG	2 cut(s)	378, 398
SaqAI	TTAA	5 cut(s)	57, 486, 492, 540, 754
SatI	GCNGC	1 cut(s)	96
Sau3AI	GATC	9 cut(s)	10, 84, 226, 390, 440, 470, 570, 681, 721
SchI	GAGTC	2 cut(s)	251, 560
SetI	ASST	6 cut(s)	34, 69, 140, 492, 537, 632
SmiMI	CAYNNNNRTG	2 cut(s)	378, 398
Sse9I	AATT	3 cut(s)	163, 616, 714
SsiI	CCGC	1 cut(s)	689
StyI	CCWWGG	1 cut(s)	634
TaaI	ACNGT	2 cut(s)	436, 729
TaiI	ACGT	1 cut(s)	140
TaqI	TCGA	3 cut(s)	87, 661, 724
TasI	AATT	3 cut(s)	163, 616, 714
TfiI	GAWTC	2 cut(s)	236, 692
Tru1I	TTAA	5 cut(s)	57, 486, 492, 540, 754
Tru9I	TTAA	5 cut(s)	57, 486, 492, 540, 754
TseFI	GTSAC	1 cut(s)	647
TseI	GCWGC	1 cut(s)	95
Tsp45I	GTSAC	1 cut(s)	647
TspDTI	ATGAA	3 cut(s)	416, 606, 689
XceI	RCATGY	1 cut(s)	312
XmnI	GAANNNNTTC	1 cut(s)	696

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.