Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0003240

Physical Location & Seq

Genomic Coordinates Forward (+)

1543235 .. 1544639

Gene Structure 1405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g02700.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGAGCTTCAGCTGGGTCTCGCTCTTCCAGCCAATAACGATTTTCCAGTCAAAGGTGGCCTCGACTTGAACATCAACGACTTTCTCTACCACCCTACTGACGGCAGCAACAAGAACAAGAAGCGTAGTTTCACCCAAGCTTTTGATCCCAGCATTGCCTCAGCAGCCGTGCCTCGAAAGCTGCCTTGGTTGCTTTGGAACAACCAACCAAACGACGACGACGACGACGACACCGGACACAGTTCTCGTTACACCAACATGATCAAAAATGAGGAAGATGGATTGGTCGGTTGGCCGCCTATTACGTCGTGGAGGAAGGAGACTTGTTTTCACATCCAAGGCGACGGCGGTGGTCGTCGTCCTCGGACGGTGAGGGTCAATGGCGGCGGCTCAACATTTGTGAAGGTGAAGATGGAGGGAGTAGGGATAGCAAGAAAGATTGACTTGAGCCAACACCAGGGTTTCCACACACTCCTAAGAACCCTGATGCATATGTTTGACAAATGTGAGATGGATTCAGACAATTATAAACTCACTTATCAAGACAGGGAAGGAGATTGGCTTCTTGCTCATGATCAAGATGTGCCTTGGAGAACATTCGTGCGGTCAGTGCAACGACTCAACCTGCTTAAGAGGGGAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0016020 GO:0031090 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

ko00510 ko01100 ko04075 map00510 map01100 map04075

Pfam Domains

Protein Families

Glyco_transf_17

Protein Analysis

215

Amino Acids

24.41

Weight (kDa)

6.65

Isoelectric Point (pI)

47.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	2 - 169	3e-17	AUX/IAA family
AUX_IAA	PF02309	172 - 213	1.7e-10	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003240)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32280 AT4G32280 AT4G32280
fragaria_vesca	FvH4_1g02700 FvH4_2g28970
malus_domestica	MD02G1027600.v1.1 MD08G1151300.v1.1 MD15G1169100.v1.1
prunus_persica	Prupe.1G481700_v2.0.a1 Prupe.1G481700_v2.0.a1 Prupe.1G481700_v2.0.a1 Prupe.7G247500_v2.0.a1
pyrus_communis	pycom02g02260 pycom08g12740 pycom15g15080
rosa_chinensis	RchiOBHm_Chr2g0087791 RchiOBHm_Chr6g0297821
rosa_laevigata	RLG00000011558 RLG00000015900
rosa_multiflora	Rmu_co8358427.1_g000001 Rmu_sc0003137.1_g000004 Rmu_sc0008385.1_g000003
rosa_roxburghii	Rroxscaffold_2G00153220 Rroxscaffold_7G00170170 Rroxscaffold_7G00179020
rosa_rugosa	Rorug01G0478700 Rorug06G0275700
rosa_samantha	Rh2AG033100 Rh2BG032200 Rh2CG032900 Rh2DG032700 Rh6AG386400 Rh6BG395000 Rh6CG400700 Rh6DG387100
rosa_wichuraiana	Rw2G002580 Rw6G033680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	528
Acc36I	ACCTGC	1 cut(s)	633
AciI	CCGC	5 cut(s)	296, 348, 384, 387, 604
AclWI	GGATC	1 cut(s)	140
AcoI	YGGCCR	1 cut(s)	293
AfiI	CCNNNNNNNGG	3 cut(s)	53, 101, 457
AflII	CTTAAG	1 cut(s)	629
AgsI	TTSAA	1 cut(s)	70
AjnI	CCWGG	1 cut(s)	456
AjuI	GAANNNNNNNTTGG	2 cut(s)	169, 201
AluBI	AGCT	4 cut(s)	7, 13, 140, 181
AluI	AGCT	4 cut(s)	7, 13, 140, 181
Alw26I	GTCTC	3 cut(s)	23, 314, 633
AlwI	GGATC	1 cut(s)	140
AoxI	GGCC	2 cut(s)	58, 293
ApeKI	GCWGC	3 cut(s)	105, 164, 181
AsuHPI	GGTGA	3 cut(s)	124, 382, 418
BbvCI	CCTCAGC	1 cut(s)	160
BbvI	GCAGC	3 cut(s)	117, 168, 176
BccI	CCATC	3 cut(s)	272, 406, 505
BceAI	ACGGC	3 cut(s)	118, 152, 361
BciT130I	CCWGG	1 cut(s)	458
BclI	TGATCA	2 cut(s)	261, 574
BcoDI	GTCTC	3 cut(s)	23, 314, 633
BfrI	CTTAAG	1 cut(s)	629
BfuAI	ACCTGC	1 cut(s)	633
BisI	GCNGC	6 cut(s)	106, 165, 182, 296, 385, 388
BlsI	GCNGC	6 cut(s)	107, 166, 183, 297, 386, 389
Bme1390I	CCNGG	1 cut(s)	458
BmrFI	CCNGG	1 cut(s)	458
BmsI	GCATC	1 cut(s)	477
Bpu10I	CCTNAGC	1 cut(s)	160
BpuEI	CTTGAG	1 cut(s)	466
BsaI	GGTCTC	1 cut(s)	23
BsaJI	CCNNGG	5 cut(s)	185, 337, 362, 457, 587
BsaWI	WCCGGW	1 cut(s)	233
Bsc4I	CCNNNNNNNGG	3 cut(s)	53, 101, 457
Bse1I	ACTGG	1 cut(s)	47
Bse3DI	GCAATG	1 cut(s)	153
BseBI	CCWGG	1 cut(s)	458
BseDI	CCNNGG	5 cut(s)	185, 337, 362, 457, 587
BseGI	GGATG	1 cut(s)	333
BseLI	CCNNNNNNNGG	3 cut(s)	53, 101, 457
BseMI	GCAATG	1 cut(s)	153
BseMII	CTCAG	1 cut(s)	174
BseNI	ACTGG	1 cut(s)	47
BseXI	GCAGC	3 cut(s)	117, 168, 176
BseYI	CCCAGC	2 cut(s)	13, 149
BshFI	GGCC	2 cut(s)	60, 295
BsiSI	CCGG	1 cut(s)	234
BslI	CCNNNNNNNGG	3 cut(s)	53, 101, 457
BsmAI	GTCTC	3 cut(s)	23, 314, 633
BsnI	GGCC	2 cut(s)	60, 295
Bso31I	GGTCTC	1 cut(s)	23
Bsp143I	GATC	3 cut(s)	145, 261, 574
BspACI	CCGC	5 cut(s)	296, 348, 384, 387, 604
BspANI	GGCC	2 cut(s)	60, 295
BspCNI	CTCAG	1 cut(s)	173
BspHI	TCATGA	1 cut(s)	571
BspMI	ACCTGC	1 cut(s)	633
BspPI	GGATC	1 cut(s)	140
BspQI	GCTCTTC	1 cut(s)	30
BspTI	CTTAAG	1 cut(s)	629
BspTNI	GGTCTC	1 cut(s)	23
BsrDI	GCAATG	1 cut(s)	153
BsrI	ACTGG	1 cut(s)	47
BssECI	CCNNGG	5 cut(s)	185, 337, 362, 457, 587
BssMI	GATC	3 cut(s)	145, 261, 574
BssT1I	CCWWGG	3 cut(s)	185, 337, 587
Bst2UI	CCWGG	1 cut(s)	458
Bst4CI	ACNGT	2 cut(s)	242, 370
Bst6I	CTCTTC	1 cut(s)	30
BstAFI	CTTAAG	1 cut(s)	629
BstDEI	CTNAG	2 cut(s)	160, 476
BstF5I	GGATG	1 cut(s)	333
BstKTI	GATC	3 cut(s)	148, 264, 577
BstMAI	GTCTC	3 cut(s)	23, 314, 633
BstMBI	GATC	3 cut(s)	145, 261, 574
BstMWI	GCNNNNNNNGC	5 cut(s)	29, 164, 178, 190, 610
BstNI	CCWGG	1 cut(s)	458
BstSCI	CCNGG	1 cut(s)	456
BstV1I	GCAGC	3 cut(s)	117, 168, 176
BsuRI	GGCC	2 cut(s)	60, 295
BtsCI	GGATG	1 cut(s)	333
BtsIMutI	CAGTG	1 cut(s)	615
BveI	ACCTGC	1 cut(s)	633
CciI	TCATGA	1 cut(s)	571
CviAII	CATG	2 cut(s)	259, 572
DdeI	CTNAG	2 cut(s)	160, 476
DpnI	GATC	3 cut(s)	147, 263, 576
DpnII	GATC	3 cut(s)	145, 261, 574
EaeI	YGGCCR	1 cut(s)	293
Eam1104I	CTCTTC	1 cut(s)	30
EarI	CTCTTC	1 cut(s)	30
Eco130I	CCWWGG	3 cut(s)	185, 337, 587
Eco31I	GGTCTC	1 cut(s)	23
EcoRII	CCWGG	1 cut(s)	456
EcoT14I	CCWWGG	3 cut(s)	185, 337, 587
EcoT22I	ATGCAT	1 cut(s)	492
ErhI	CCWWGG	3 cut(s)	185, 337, 587
FaeI	CATG	2 cut(s)	262, 575
FaiI	YATR	5 cut(s)	260, 492, 494, 528, 573
FalI	AAGNNNNNCTT	2 cut(s)	428, 460
FatI	CATG	2 cut(s)	258, 571
FauNDI	CATATG	1 cut(s)	492
FbaI	TGATCA	2 cut(s)	261, 574
Fnu4HI	GCNGC	6 cut(s)	106, 165, 182, 296, 385, 388
FokI	GGATG	1 cut(s)	320
Fsp4HI	GCNGC	6 cut(s)	106, 165, 182, 296, 385, 388
GluI	GCNGC	6 cut(s)	106, 165, 182, 296, 385, 388
GsaI	CCCAGC	2 cut(s)	17, 153
HaeIII	GGCC	2 cut(s)	60, 295
HapII	CCGG	1 cut(s)	234
Hin1II	CATG	2 cut(s)	262, 575
HindIII	AAGCTT	1 cut(s)	138
HinfI	GANTC	2 cut(s)	515, 618
HpaII	CCGG	1 cut(s)	234
HphI	GGTGA	3 cut(s)	124, 382, 418
Hpy188I	TCNGA	2 cut(s)	366, 520
Hpy188III	TCNNGA	3 cut(s)	542, 572, 578
Hpy99I	CGWCG	8 cut(s)	218, 221, 224, 227, 230, 310, 347, 360
HpyAV	CCTTC	3 cut(s)	310, 397, 545
HpyCH4III	ACNGT	2 cut(s)	242, 370
HpyCH4IV	ACGT	1 cut(s)	305
HpyCH4V	TGCA	2 cut(s)	490, 613
HpyF10VI	GCNNNNNNNGC	5 cut(s)	29, 164, 178, 190, 610
HpyF3I	CTNAG	2 cut(s)	160, 476
HpySE526I	ACGT	1 cut(s)	305
Hsp92II	CATG	2 cut(s)	262, 575
Ksp22I	TGATCA	2 cut(s)	261, 574
Kzo9I	GATC	3 cut(s)	145, 261, 574
LguI	GCTCTTC	1 cut(s)	30
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	9 cut(s)	42, 60, 163, 247, 443, 470, 497, 532, 638
Lsp1109I	GCAGC	3 cut(s)	117, 168, 176
LweI	GCATC	1 cut(s)	477
MaeII	ACGT	1 cut(s)	305
MaeIII	GTNAC	1 cut(s)	248
MalI	GATC	3 cut(s)	147, 263, 576
MboI	GATC	3 cut(s)	145, 261, 574
MboII	GAAGA	3 cut(s)	17, 287, 421
MluCI	AATT	1 cut(s)	523
MlyI	GAGTC	1 cut(s)	612
MnlI	CCTC	9 cut(s)	71, 169, 183, 265, 306, 366, 372, 409, 627
Mph1103I	ATGCAT	1 cut(s)	492
MseI	TTAA	1 cut(s)	630
MslI	CAYNNNNRTG	1 cut(s)	257
MspA1I	CMGCKG	1 cut(s)	13
MspCI	CTTAAG	1 cut(s)	629
MspI	CCGG	1 cut(s)	234
MspR9I	CCNGG	1 cut(s)	458
MvaI	CCWGG	1 cut(s)	458
MwoI	GCNNNNNNNGC	5 cut(s)	29, 164, 178, 190, 610
NdeI	CATATG	1 cut(s)	492
NdeII	GATC	3 cut(s)	145, 261, 574
NlaIII	CATG	2 cut(s)	262, 575
NsiI	ATGCAT	1 cut(s)	492
PagI	TCATGA	1 cut(s)	571
PciSI	GCTCTTC	1 cut(s)	30
PcsI	WCGNNNNNNNCGW	3 cut(s)	219, 222, 225
PfeI	GAWTC	1 cut(s)	515
PkrI	GCNGC	6 cut(s)	107, 166, 183, 297, 386, 389
PleI	GAGTC	1 cut(s)	612
PpsI	GAGTC	1 cut(s)	612
PsiI	TTATAA	1 cut(s)	528
Psp6I	CCWGG	1 cut(s)	456
PspFI	CCCAGC	2 cut(s)	13, 149
PspGI	CCWGG	1 cut(s)	456
PvuII	CAGCTG	1 cut(s)	13
RseI	CAYNNNNRTG	1 cut(s)	257
SapI	GCTCTTC	1 cut(s)	30
SaqAI	TTAA	1 cut(s)	630
SatI	GCNGC	6 cut(s)	106, 165, 182, 296, 385, 388
Sau3AI	GATC	3 cut(s)	145, 261, 574
SchI	GAGTC	1 cut(s)	612
ScrFI	CCNGG	1 cut(s)	458
SetI	ASST	8 cut(s)	9, 15, 58, 142, 183, 308, 408, 627
SfaNI	GCATC	1 cut(s)	477
SmiMI	CAYNNNNRTG	1 cut(s)	257
SmlI	CTYRAG	2 cut(s)	445, 629
SmoI	CTYRAG	2 cut(s)	445, 629
Sse9I	AATT	1 cut(s)	523
SsiI	CCGC	5 cut(s)	296, 348, 384, 387, 604
StyD4I	CCNGG	1 cut(s)	456
StyI	CCWWGG	3 cut(s)	185, 337, 587
TaaI	ACNGT	2 cut(s)	242, 370
TaiI	ACGT	1 cut(s)	308
TaqI	TCGA	2 cut(s)	63, 175
TasI	AATT	1 cut(s)	523
TauI	GCSGC	3 cut(s)	298, 387, 390
TfiI	GAWTC	1 cut(s)	515
Tru1I	TTAA	1 cut(s)	630
Tru9I	TTAA	1 cut(s)	630
TscAI	CASTG	1 cut(s)	615
TseI	GCWGC	3 cut(s)	105, 164, 181
TspRI	CASTG	1 cut(s)	615
Vha464I	CTTAAG	1 cut(s)	629
Zsp2I	ATGCAT	1 cut(s)	492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.