Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0003240

Physical Location & Seq

Genomic Coordinates Reverse (-)

21022925 .. 21025300

Gene Structure 2376 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G247500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGAGCTTCAACTGGGTCTCGCTCTTCCAAGCAATCCAATCAAAGGCTTCGACTTAAATAACTTTGGTTACGAAGCTAAGGAAGTAGCAGCTGTTTCCAAACATATTCATTATGACAACAAGAAACGCAGCTTTGACCAAGCTTTTGACGAACACAACAATAACACTAGTCGTTCCACTGCAGCCGTGCCTCGAACGCTGCCTTTGTTCCTTTGGAACAACAACCAACCAAACCACCACGATAAAGACGACGACCCTGATAAGCACCAAGACAACAACTCCCGCTTTACCATTGTCATCAAAAATGATGGAGATGGTTTGGTAGGGTGGCCTCCAATTAAGTCATGGAGAAAGGAGGCTTGCTTCCACAACCACAACCATGGTCATGGTCATCGGACGGTGGGGAATGGCTCTGGTGGCGGTGGCAGAGGATCATCAAACCACCACCACTCTACATTCGTTAAGGTGAAGATGGAAGGAGTGGGAATAGCAAGAAAGATCGACTTAAGCCTCCATCACTCTTTCCGAACACTCGCAGACACCTTGATGGACATGTTTGACAAATGTCAGATGGATTCAAACAATTATAAACTCACTTACCAAGACAGAGAGGGAGACTGGCTTCTTGCTCGAGATGTTCCTTGGAGAACTTTCATCAGATCGGTGCAACGTCTCAAATTGGTTAAGAAGAGTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010114 GO:0010218 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

233

Amino Acids

26.49

Weight (kDa)

9.0

Isoelectric Point (pI)

35.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003240)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32280 AT4G32280 AT4G32280
fragaria_vesca	FvH4_1g02700 FvH4_2g28970
malus_domestica	MD02G1027600.v1.1 MD08G1151300.v1.1 MD15G1169100.v1.1
prunus_persica	Prupe.1G481700_v2.0.a1 Prupe.1G481700_v2.0.a1 Prupe.1G481700_v2.0.a1 Prupe.7G247500_v2.0.a1
pyrus_communis	pycom02g02260 pycom08g12740 pycom15g15080
rosa_chinensis	RchiOBHm_Chr2g0087791 RchiOBHm_Chr6g0297821
rosa_laevigata	RLG00000011558 RLG00000015900
rosa_multiflora	Rmu_co8358427.1_g000001 Rmu_sc0003137.1_g000004 Rmu_sc0008385.1_g000003
rosa_roxburghii	Rroxscaffold_2G00153220 Rroxscaffold_7G00170170 Rroxscaffold_7G00179020
rosa_rugosa	Rorug01G0478700 Rorug06G0275700
rosa_samantha	Rh2AG033100 Rh2BG032200 Rh2CG032900 Rh2DG032700 Rh6AG386400 Rh6BG395000 Rh6CG400700 Rh6DG387100
rosa_wichuraiana	Rw2G002580 Rw6G033680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	588
AciI	CCGC	2 cut(s)	283, 420
AclWI	GGATC	1 cut(s)	439
AfiI	CCNNNNNNNGG	1 cut(s)	44
AflII	CTTAAG	1 cut(s)	505
AflIII	ACRYGT	1 cut(s)	552
AgsI	TTSAA	2 cut(s)	11, 579
AhlI	ACTAGT	1 cut(s)	167
AluBI	AGCT	5 cut(s)	7, 77, 92, 132, 143
AluI	AGCT	5 cut(s)	7, 77, 92, 132, 143
Alw26I	GTCTC	3 cut(s)	23, 609, 677
AlwI	GGATC	1 cut(s)	439
Ama87I	CYCGRG	1 cut(s)	630
AoxI	GGCC	1 cut(s)	329
ApeKI	GCWGC	4 cut(s)	89, 129, 182, 199
ArsI	GACNNNNNNTTYG	2 cut(s)	128, 160
AsuHPI	GGTGA	1 cut(s)	478
AvaI	CYCGRG	1 cut(s)	630
BbvI	GCAGC	4 cut(s)	101, 141, 186, 194
BccI	CCATC	6 cut(s)	302, 308, 466, 522, 541, 565
BceAI	ACGGC	1 cut(s)	170
BcoDI	GTCTC	3 cut(s)	23, 609, 677
BcuI	ACTAGT	1 cut(s)	167
BfaI	CTAG	1 cut(s)	168
BfmI	CTRYAG	1 cut(s)	180
BfrI	CTTAAG	1 cut(s)	505
BisI	GCNGC	4 cut(s)	90, 130, 183, 200
BlsI	GCNGC	4 cut(s)	91, 131, 184, 201
BmeT110I	CYCGRG	1 cut(s)	630
BmrI	ACTGGG	1 cut(s)	23
BmuI	ACTGGG	1 cut(s)	23
BoxI	GACNNNNGTC	1 cut(s)	564
Bpu10I	CCTNAGC	1 cut(s)	78
BsaI	GGTCTC	1 cut(s)	23
BsaJI	CCNNGG	2 cut(s)	379, 641
BsaXI	ACNNNNNCTCC	2 cut(s)	263, 293
Bsc4I	CCNNNNNNNGG	1 cut(s)	44
Bse1I	ACTGG	2 cut(s)	18, 623
BseDI	CCNNGG	2 cut(s)	379, 641
BseLI	CCNNNNNNNGG	1 cut(s)	44
BseNI	ACTGG	2 cut(s)	18, 623
BseXI	GCAGC	4 cut(s)	101, 141, 186, 194
BshFI	GGCC	1 cut(s)	331
BsiHKCI	CYCGRG	1 cut(s)	630
BslI	CCNNNNNNNGG	1 cut(s)	44
BsmAI	GTCTC	3 cut(s)	23, 609, 677
BsmBI	CGTCTC	1 cut(s)	677
BsnI	GGCC	1 cut(s)	331
Bso31I	GGTCTC	1 cut(s)	23
BsoBI	CYCGRG	1 cut(s)	630
Bsp143I	GATC	3 cut(s)	431, 498, 659
Bsp19I	CCATGG	1 cut(s)	379
BspACI	CCGC	2 cut(s)	283, 420
BspANI	GGCC	1 cut(s)	331
BspMAI	CTGCAG	1 cut(s)	184
BspPI	GGATC	1 cut(s)	439
BspQI	GCTCTTC	1 cut(s)	30
BspTI	CTTAAG	1 cut(s)	505
BspTNI	GGTCTC	1 cut(s)	23
BsrI	ACTGG	2 cut(s)	18, 623
BssECI	CCNNGG	2 cut(s)	379, 641
BssMI	GATC	3 cut(s)	431, 498, 659
BssT1I	CCWWGG	2 cut(s)	379, 641
Bst4CI	ACNGT	1 cut(s)	400
Bst6I	CTCTTC	2 cut(s)	30, 683
BstAFI	CTTAAG	1 cut(s)	505
BstC8I	GCNNGC	1 cut(s)	361
BstDEI	CTNAG	1 cut(s)	78
BstDSI	CCRYGG	1 cut(s)	379
BstKTI	GATC	3 cut(s)	434, 501, 662
BstMAI	GTCTC	3 cut(s)	23, 609, 677
BstMBI	GATC	3 cut(s)	431, 498, 659
BstMWI	GCNNNNNNNGC	2 cut(s)	196, 417
BstNSI	RCATGY	1 cut(s)	556
BstPAI	GACNNNNGTC	1 cut(s)	564
BstSFI	CTRYAG	1 cut(s)	180
BstV1I	GCAGC	4 cut(s)	101, 141, 186, 194
BstXI	CCANNNNNNTGG	2 cut(s)	380, 386
BsuRI	GGCC	1 cut(s)	331
BtgI	CCRYGG	1 cut(s)	379
BtsI	GCAGTG	1 cut(s)	177
BtsIMutI	CAGTG	1 cut(s)	177
Cac8I	GCNNGC	1 cut(s)	361
CviAII	CATG	4 cut(s)	345, 380, 386, 553
DdeI	CTNAG	1 cut(s)	78
DpnI	GATC	3 cut(s)	433, 500, 661
DpnII	GATC	3 cut(s)	431, 498, 659
Eam1104I	CTCTTC	2 cut(s)	30, 683
EarI	CTCTTC	2 cut(s)	30, 683
Eco130I	CCWWGG	2 cut(s)	379, 641
Eco31I	GGTCTC	1 cut(s)	23
Eco88I	CYCGRG	1 cut(s)	630
EcoT14I	CCWWGG	2 cut(s)	379, 641
ErhI	CCWWGG	2 cut(s)	379, 641
Esp3I	CGTCTC	1 cut(s)	677
FaeI	CATG	4 cut(s)	348, 383, 389, 556
FaiI	YATR	7 cut(s)	105, 114, 346, 381, 387, 554, 588
FalI	AAGNNNNNCTT	2 cut(s)	488, 520
FatI	CATG	4 cut(s)	344, 379, 385, 552
FauI	CCCGC	1 cut(s)	290
Fnu4HI	GCNGC	4 cut(s)	90, 130, 183, 200
Fsp4HI	GCNGC	4 cut(s)	90, 130, 183, 200
FspBI	CTAG	1 cut(s)	168
GluI	GCNGC	4 cut(s)	90, 130, 183, 200
HaeIII	GGCC	1 cut(s)	331
Hin1II	CATG	4 cut(s)	348, 383, 389, 556
HindIII	AAGCTT	1 cut(s)	141
HinfI	GANTC	1 cut(s)	575
HphI	GGTGA	1 cut(s)	478
Hpy188I	TCNGA	4 cut(s)	396, 527, 570, 659
Hpy188III	TCNNGA	1 cut(s)	632
Hpy99I	CGWCG	1 cut(s)	254
HpyAV	CCTTC	1 cut(s)	470
HpyCH4III	ACNGT	1 cut(s)	400
HpyCH4IV	ACGT	1 cut(s)	670
HpyCH4V	TGCA	2 cut(s)	182, 667
HpyF10VI	GCNNNNNNNGC	2 cut(s)	196, 417
HpyF3I	CTNAG	1 cut(s)	78
HpySE526I	ACGT	1 cut(s)	670
Hsp92II	CATG	4 cut(s)	348, 383, 389, 556
Kzo9I	GATC	3 cut(s)	431, 498, 659
LguI	GCTCTTC	1 cut(s)	30
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	3 cut(s)	270, 399, 604
Lsp1109I	GCAGC	4 cut(s)	101, 141, 186, 194
MaeI	CTAG	1 cut(s)	168
MaeII	ACGT	1 cut(s)	670
MaeIII	GTNAC	1 cut(s)	68
MalI	GATC	3 cut(s)	433, 500, 661
MboI	GATC	3 cut(s)	431, 498, 659
MboII	GAAGA	2 cut(s)	17, 481
MluCI	AATT	3 cut(s)	336, 583, 677
MnlI	CCTC	6 cut(s)	201, 342, 349, 422, 521, 604
MseI	TTAA	6 cut(s)	56, 339, 462, 506, 684, 697
MslI	CAYNNNNRTG	3 cut(s)	378, 384, 545
MspA1I	CMGCKG	1 cut(s)	92
MspCI	CTTAAG	1 cut(s)	505
MwoI	GCNNNNNNNGC	2 cut(s)	196, 417
NcoI	CCATGG	1 cut(s)	379
NdeII	GATC	3 cut(s)	431, 498, 659
NlaIII	CATG	4 cut(s)	348, 383, 389, 556
NspI	RCATGY	1 cut(s)	556
PaeR7I	CTCGAG	1 cut(s)	630
PciI	ACATGT	1 cut(s)	552
PciSI	GCTCTTC	1 cut(s)	30
PcsI	WCGNNNNNNNCGW	1 cut(s)	246
PfeI	GAWTC	1 cut(s)	575
PkrI	GCNGC	4 cut(s)	91, 131, 184, 201
PscI	ACATGT	1 cut(s)	552
PshAI	GACNNNNGTC	1 cut(s)	564
PsiI	TTATAA	1 cut(s)	588
PstI	CTGCAG	1 cut(s)	184
PvuII	CAGCTG	1 cut(s)	92
RseI	CAYNNNNRTG	3 cut(s)	378, 384, 545
SapI	GCTCTTC	1 cut(s)	30
SaqAI	TTAA	6 cut(s)	56, 339, 462, 506, 684, 697
SatI	GCNGC	4 cut(s)	90, 130, 183, 200
Sau3AI	GATC	3 cut(s)	431, 498, 659
SetI	ASST	8 cut(s)	9, 79, 94, 134, 145, 468, 545, 673
SfcI	CTRYAG	1 cut(s)	180
Sfr274I	CTCGAG	1 cut(s)	630
SlaI	CTCGAG	1 cut(s)	630
SmiMI	CAYNNNNRTG	3 cut(s)	378, 384, 545
SmlI	CTYRAG	2 cut(s)	505, 630
SmoI	CTYRAG	2 cut(s)	505, 630
SpeI	ACTAGT	1 cut(s)	167
Sse9I	AATT	3 cut(s)	336, 583, 677
SsiI	CCGC	2 cut(s)	283, 420
SspMI	CTAG	1 cut(s)	168
StyI	CCWWGG	2 cut(s)	379, 641
TaaI	ACNGT	1 cut(s)	400
TaiI	ACGT	1 cut(s)	673
TaqI	TCGA	4 cut(s)	51, 193, 501, 631
TasI	AATT	3 cut(s)	336, 583, 677
TfiI	GAWTC	1 cut(s)	575
Tru1I	TTAA	6 cut(s)	56, 339, 462, 506, 684, 697
Tru9I	TTAA	6 cut(s)	56, 339, 462, 506, 684, 697
TscAI	CASTG	1 cut(s)	184
TseI	GCWGC	4 cut(s)	89, 129, 182, 199
TspDTI	ATGAA	2 cut(s)	98, 643
TspRI	CASTG	1 cut(s)	184
Vha464I	CTTAAG	1 cut(s)	505
XceI	RCATGY	1 cut(s)	556
XcmI	CCANNNNNNNNNTGG	1 cut(s)	342
XhoI	CTCGAG	1 cut(s)	630
XspI	CTAG	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.