Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0003240

Physical Location & Seq

Genomic Coordinates Forward (+)

22586442 .. 22588306

Gene Structure 1865 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g28970.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGAGCTTCAACTGGGTTTGGCTCTGTCACTTCCGGTTCATCACAACGCTCCTGTCAAAGGGTTTGATGTAACCGGTCGTCATGGGGTGATGCGTAGTTTGGATATATGGAGCTATGGATGCAGCATGGAGAGGAAAAAGAAGCGCATTTTCGACACCGCTTTCGAGGACGATGATGAGTCTAAGACGTTGCCTTTGTTGTTGTGGCATGGCCAGCCGGGTGAGGAAGACGATGATGGCAAGAGGCAGAAGAAAAGAGACTTTTGCAGCTTCATTGATGCCAAAGATGGAGAAGGAGACCAAGTAGTTGGGTGGCCACCAATTAAGTCATGGAGGAAAAAGATGCTTTTTTCTGATCATGATCAACACCATGGTCATGGCCATGCCCACCATAATTTCCAAAATCATCAGAATCTTGTGGAAAAGGAAGATGATGGGTCAGAAAATTCCATGTACGTAAAGGTCAAGATGGAAGGAGTGGGAATTCTGAGGAAGATAGATATAAAGCTGCATCACTCTTATCAGACACTTAGAGACTCCTTGATAACCATGTTTGCTAAATGCAAAGAATGTGAGAATGAGGATACTGCAGATTTTACAGTGACTTATCAGGACATGCATGGACATTGGTTGCTTGCAGGAGATGTTCCCTGGCAAACCTTCGTCGGGTCTGTGCAGCGCCTGGAGATTATAAGGAATGGTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AUX_IAA LRR_1 LRR_4 LRR_8 Malectin

Protein Analysis

236

Amino Acids

27.02

Weight (kDa)

6.04

Isoelectric Point (pI)

39.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	45 - 233	3.6e-35	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003240)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32280 AT4G32280 AT4G32280
fragaria_vesca	FvH4_1g02700 FvH4_2g28970
malus_domestica	MD02G1027600.v1.1 MD08G1151300.v1.1 MD15G1169100.v1.1
prunus_persica	Prupe.1G481700_v2.0.a1 Prupe.1G481700_v2.0.a1 Prupe.1G481700_v2.0.a1 Prupe.7G247500_v2.0.a1
pyrus_communis	pycom02g02260 pycom08g12740 pycom15g15080
rosa_chinensis	RchiOBHm_Chr2g0087791 RchiOBHm_Chr6g0297821
rosa_laevigata	RLG00000011558 RLG00000015900
rosa_multiflora	Rmu_co8358427.1_g000001 Rmu_sc0003137.1_g000004 Rmu_sc0008385.1_g000003
rosa_roxburghii	Rroxscaffold_2G00153220 Rroxscaffold_7G00170170 Rroxscaffold_7G00179020
rosa_rugosa	Rorug01G0478700 Rorug06G0275700
rosa_samantha	Rh2AG033100 Rh2BG032200 Rh2CG032900 Rh2DG032700 Rh6AG386400 Rh6BG395000 Rh6CG400700 Rh6DG387100
rosa_wichuraiana	Rw2G002580 Rw6G033680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	692
AciI	CCGC	1 cut(s)	159
AcoI	YGGCCR	3 cut(s)	211, 314, 379
AcsI	RAATTY	2 cut(s)	445, 483
AfaI	GTAC	1 cut(s)	455
AfiI	CCNNNNNNNGG	2 cut(s)	59, 666
AgeI	ACCGGT	1 cut(s)	74
AgsI	TTSAA	1 cut(s)	11
AjnI	CCWGG	2 cut(s)	650, 681
AluBI	AGCT	4 cut(s)	7, 114, 270, 508
AluI	AGCT	4 cut(s)	7, 114, 270, 508
Alw26I	GTCTC	3 cut(s)	252, 291, 528
AlwNI	CAGNNNCTG	1 cut(s)	682
AoxI	GGCC	3 cut(s)	211, 314, 379
ApeKI	GCWGC	4 cut(s)	123, 267, 508, 676
ApoI	RAATTY	2 cut(s)	445, 483
ArsI	GACNNNNNNTTYG	4 cut(s)	146, 178, 178, 210
AsiGI	ACCGGT	1 cut(s)	74
AspLEI	GCGC	2 cut(s)	147, 681
AsuC2I	CCSGG	1 cut(s)	219
AsuHPI	GGTGA	2 cut(s)	100, 233
BalI	TGGCCA	3 cut(s)	213, 316, 381
BbsI	GAAGAC	1 cut(s)	234
BbvI	GCAGC	4 cut(s)	135, 279, 495, 688
BccI	CCATC	4 cut(s)	230, 281, 428, 463
BciT130I	CCWGG	2 cut(s)	652, 683
BciVI	GTATCC	1 cut(s)	577
BclI	TGATCA	2 cut(s)	355, 361
BcnI	CCSGG	1 cut(s)	219
BcoDI	GTCTC	3 cut(s)	252, 291, 528
BfmI	CTRYAG	1 cut(s)	588
BfoI	RGCGCY	1 cut(s)	682
BfuI	GTATCC	1 cut(s)	577
BisI	GCNGC	4 cut(s)	124, 268, 509, 677
BlsI	GCNGC	4 cut(s)	125, 269, 510, 678
Bme1390I	CCNGG	3 cut(s)	219, 652, 683
BmrFI	CCNGG	3 cut(s)	219, 652, 683
BmrI	ACTGGG	1 cut(s)	23
BmsI	GCATC	5 cut(s)	81, 110, 268, 333, 520
BmuI	ACTGGG	1 cut(s)	23
BpiI	GAAGAC	1 cut(s)	234
BpmI	CTGGAG	1 cut(s)	704
BpuMI	CCSGG	1 cut(s)	219
BsaAI	YACGTR	1 cut(s)	457
BsaBI	GATNNNNATC	1 cut(s)	360
BsaI	GGTCTC	1 cut(s)	291
BsaJI	CCNNGG	2 cut(s)	370, 650
BsaWI	WCCGGW	2 cut(s)	34, 74
BsaXI	ACNNNNNCTCC	2 cut(s)	288, 318
Bsc4I	CCNNNNNNNGG	2 cut(s)	59, 666
Bse118I	RCCGGY	1 cut(s)	74
Bse1I	ACTGG	1 cut(s)	18
Bse8I	GATNNNNATC	1 cut(s)	360
BseBI	CCWGG	2 cut(s)	652, 683
BseDI	CCNNGG	2 cut(s)	370, 650
BseGI	GGATG	1 cut(s)	125
BseJI	GATNNNNATC	1 cut(s)	360
BseLI	CCNNNNNNNGG	2 cut(s)	59, 666
BseMII	CTCAG	1 cut(s)	479
BseNI	ACTGG	1 cut(s)	18
BseXI	GCAGC	4 cut(s)	135, 279, 495, 688
BsgI	GTGCAG	1 cut(s)	695
Bsh1285I	CGRYCG	1 cut(s)	79
BshFI	GGCC	3 cut(s)	213, 316, 381
BshTI	ACCGGT	1 cut(s)	74
BsiEI	CGRYCG	1 cut(s)	79
BsiSI	CCGG	3 cut(s)	35, 75, 218
BslI	CCNNNNNNNGG	2 cut(s)	59, 666
BsmAI	GTCTC	3 cut(s)	252, 291, 528
BsnI	GGCC	3 cut(s)	213, 316, 381
Bso31I	GGTCTC	1 cut(s)	291
Bsp143I	GATC	2 cut(s)	355, 361
Bsp19I	CCATGG	1 cut(s)	370
BspACI	CCGC	1 cut(s)	159
BspANI	GGCC	3 cut(s)	213, 316, 381
BspCNI	CTCAG	1 cut(s)	480
BspHI	TCATGA	1 cut(s)	358
BspMAI	CTGCAG	1 cut(s)	592
BspTNI	GGTCTC	1 cut(s)	291
BsrFI	RCCGGY	1 cut(s)	74
BsrI	ACTGG	1 cut(s)	18
BssAI	RCCGGY	1 cut(s)	74
BssECI	CCNNGG	2 cut(s)	370, 650
BssMI	GATC	2 cut(s)	355, 361
BssT1I	CCWWGG	1 cut(s)	370
Bst2UI	CCWGG	2 cut(s)	652, 683
Bst4CI	ACNGT	1 cut(s)	601
BstBAI	YACGTR	1 cut(s)	457
BstC8I	GCNNGC	2 cut(s)	215, 636
BstDEI	CTNAG	3 cut(s)	183, 488, 530
BstDSI	CCRYGG	1 cut(s)	370
BstENI	CCTNNNNNAGG	1 cut(s)	57
BstF5I	GGATG	1 cut(s)	125
BstH2I	RGCGCY	1 cut(s)	682
BstHHI	GCGC	2 cut(s)	147, 681
BstKTI	GATC	2 cut(s)	358, 364
BstMAI	GTCTC	3 cut(s)	252, 291, 528
BstMBI	GATC	2 cut(s)	355, 361
BstMCI	CGRYCG	1 cut(s)	79
BstMWI	GCNNNNNNNGC	2 cut(s)	120, 214
BstNI	CCWGG	2 cut(s)	652, 683
BstNSI	RCATGY	1 cut(s)	619
BstSCI	CCNGG	3 cut(s)	217, 650, 681
BstSFI	CTRYAG	1 cut(s)	588
BstSNI	TACGTA	1 cut(s)	457
BstV1I	GCAGC	4 cut(s)	135, 279, 495, 688
BstV2I	GAAGAC	1 cut(s)	234
BstXI	CCANNNNNNTGG	2 cut(s)	308, 377
BsuI	GTATCC	1 cut(s)	577
BsuRI	GGCC	3 cut(s)	213, 316, 381
BtgI	CCRYGG	1 cut(s)	370
BtsCI	GGATG	1 cut(s)	125
BtsIMutI	CAGTG	1 cut(s)	606
Cac8I	GCNNGC	2 cut(s)	215, 636
CaiI	CAGNNNCTG	1 cut(s)	682
CciI	TCATGA	1 cut(s)	358
CfoI	GCGC	2 cut(s)	147, 681
Cfr10I	RCCGGY	1 cut(s)	74
Csp6I	GTAC	1 cut(s)	454
CspAI	ACCGGT	1 cut(s)	74
CviJI	RGCY	9 cut(s)	7, 23, 114, 213, 217, 270, 316, 381, 508
CviKI_1	RGCY	9 cut(s)	7, 23, 114, 213, 217, 270, 316, 381, 508
CviQI	GTAC	1 cut(s)	454
DdeI	CTNAG	3 cut(s)	183, 488, 530
DpnI	GATC	2 cut(s)	357, 363
DpnII	GATC	2 cut(s)	355, 361
EaeI	YGGCCR	3 cut(s)	211, 314, 379
Eco105I	TACGTA	1 cut(s)	457
Eco130I	CCWWGG	1 cut(s)	370
Eco31I	GGTCTC	1 cut(s)	291
EcoNI	CCTNNNNNAGG	1 cut(s)	57
EcoRI	GAATTC	1 cut(s)	483
EcoRII	CCWGG	2 cut(s)	650, 681
EcoT14I	CCWWGG	1 cut(s)	370
EcoT22I	ATGCAT	1 cut(s)	621
ErhI	CCWWGG	1 cut(s)	370
FbaI	TGATCA	2 cut(s)	355, 361
Fnu4HI	GCNGC	4 cut(s)	124, 268, 509, 677
FokI	GGATG	1 cut(s)	132
Fsp4HI	GCNGC	4 cut(s)	124, 268, 509, 677
GlaI	GCGC	2 cut(s)	146, 680
GluI	GCNGC	4 cut(s)	124, 268, 509, 677
GsuI	CTGGAG	1 cut(s)	704
HaeII	RGCGCY	1 cut(s)	682
HaeIII	GGCC	3 cut(s)	213, 316, 381
HapII	CCGG	3 cut(s)	35, 75, 218
HhaI	GCGC	2 cut(s)	147, 681
Hin6I	GCGC	2 cut(s)	145, 679
HinP1I	GCGC	2 cut(s)	145, 679
HinfI	GANTC	3 cut(s)	179, 412, 536
HpaII	CCGG	3 cut(s)	35, 75, 218
HphI	GGTGA	2 cut(s)	100, 233
Hpy188I	TCNGA	5 cut(s)	355, 411, 442, 489, 525
Hpy188III	TCNNGA	3 cut(s)	359, 466, 611
Hpy99I	CGWCG	1 cut(s)	668
HpyAV	CCTTC	3 cut(s)	287, 467, 670
HpyCH4III	ACNGT	1 cut(s)	601
HpyCH4IV	ACGT	2 cut(s)	188, 456
HpyCH4V	TGCA	8 cut(s)	123, 267, 511, 564, 590, 619, 638, 676
HpyF10VI	GCNNNNNNNGC	2 cut(s)	120, 214
HpyF3I	CTNAG	3 cut(s)	183, 488, 530
HpySE526I	ACGT	2 cut(s)	188, 456
HspAI	GCGC	2 cut(s)	145, 679
Ksp22I	TGATCA	2 cut(s)	355, 361
Kzo9I	GATC	2 cut(s)	355, 361
LmnI	GCTCC	3 cut(s)	4, 55, 111
Lsp1109I	GCAGC	4 cut(s)	135, 279, 495, 688
LweI	GCATC	5 cut(s)	81, 110, 268, 333, 520
MaeII	ACGT	2 cut(s)	188, 456
MaeIII	GTNAC	3 cut(s)	27, 70, 601
MalI	GATC	2 cut(s)	357, 363
MboI	GATC	2 cut(s)	355, 361
MboII	GAAGA	4 cut(s)	239, 262, 440, 505
MlsI	TGGCCA	3 cut(s)	213, 316, 381
MluCI	AATT	4 cut(s)	321, 394, 445, 483
MluNI	TGGCCA	3 cut(s)	213, 316, 381
MlyI	GAGTC	2 cut(s)	188, 530
MnlI	CCTC	7 cut(s)	126, 160, 217, 237, 327, 483, 574
Mox20I	TGGCCA	3 cut(s)	213, 316, 381
Mph1103I	ATGCAT	1 cut(s)	621
MscI	TGGCCA	3 cut(s)	213, 316, 381
MseI	TTAA	1 cut(s)	324
MslI	CAYNNNNRTG	2 cut(s)	375, 381
Msp20I	TGGCCA	3 cut(s)	213, 316, 381
MspI	CCGG	3 cut(s)	35, 75, 218
MspR9I	CCNGG	3 cut(s)	219, 652, 683
MvaI	CCWGG	2 cut(s)	652, 683
MwoI	GCNNNNNNNGC	2 cut(s)	120, 214
NciI	CCSGG	1 cut(s)	219
NcoI	CCATGG	1 cut(s)	370
NdeII	GATC	2 cut(s)	355, 361
NmuCI	GTSAC	2 cut(s)	27, 601
NsiI	ATGCAT	1 cut(s)	621
NspI	RCATGY	1 cut(s)	619
PagI	TCATGA	1 cut(s)	358
PfeI	GAWTC	1 cut(s)	412
PinAI	ACCGGT	1 cut(s)	74
PkrI	GCNGC	4 cut(s)	125, 269, 510, 678
PleI	GAGTC	2 cut(s)	187, 530
PpsI	GAGTC	2 cut(s)	187, 530
Ppu21I	YACGTR	1 cut(s)	457
PsiI	TTATAA	1 cut(s)	692
Psp6I	CCWGG	2 cut(s)	650, 681
PspGI	CCWGG	2 cut(s)	650, 681
PstI	CTGCAG	1 cut(s)	592
PstNI	CAGNNNCTG	1 cut(s)	682
RsaI	GTAC	1 cut(s)	455
RsaNI	GTAC	1 cut(s)	454
RseI	CAYNNNNRTG	2 cut(s)	375, 381
SaqAI	TTAA	1 cut(s)	324
SatI	GCNGC	4 cut(s)	124, 268, 509, 677
Sau3AI	GATC	2 cut(s)	355, 361
SchI	GAGTC	2 cut(s)	188, 530
ScrFI	CCNGG	3 cut(s)	219, 652, 683
SetI	ASST	8 cut(s)	9, 116, 191, 272, 459, 465, 510, 662
SfaNI	GCATC	5 cut(s)	81, 110, 268, 333, 520
SfcI	CTRYAG	1 cut(s)	588
SmiMI	CAYNNNNRTG	2 cut(s)	375, 381
SnaBI	TACGTA	1 cut(s)	457
Sse9I	AATT	4 cut(s)	321, 394, 445, 483
SsiI	CCGC	1 cut(s)	159
StyD4I	CCNGG	3 cut(s)	217, 650, 681
StyI	CCWWGG	1 cut(s)	370
TaaI	ACNGT	1 cut(s)	601
TaiI	ACGT	2 cut(s)	191, 459
TaqI	TCGA	2 cut(s)	153, 165
TasI	AATT	4 cut(s)	321, 394, 445, 483
TfiI	GAWTC	1 cut(s)	412
Tru1I	TTAA	1 cut(s)	324
Tru9I	TTAA	1 cut(s)	324
TscAI	CASTG	1 cut(s)	606
TseFI	GTSAC	2 cut(s)	27, 601
TseI	GCWGC	4 cut(s)	123, 267, 508, 676
Tsp45I	GTSAC	2 cut(s)	27, 601
TspDTI	ATGAA	2 cut(s)	29, 262
TspRI	CASTG	1 cut(s)	606
XagI	CCTNNNNNAGG	1 cut(s)	57
XapI	RAATTY	2 cut(s)	445, 483
XceI	RCATGY	1 cut(s)	619
XcmI	CCANNNNNNNNNTGG	1 cut(s)	327
Zsp2I	ATGCAT	1 cut(s)	621

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.