Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003240

Physical Location & Seq

Genomic Coordinates Reverse (-)

40205296 .. 40207017

Gene Structure 1722 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G481700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGAGCTCCAATTGGGTCTTTCTCTGGCTCTTCCAGTTCACAATCCTGTTAAAGGGTTTGACATGCGCAACCATGGGGATGGGGTTGAGAAGAAAGAGATATCGGTGGGTTTGGGTTTGGAAAGCACAAAAAACCAAGTTCGAAACAAGCGCAGTTTTGATGTGGCTTTTGATGAGAGTGCCGGAAATGAGTCGAAAATGTTGCCCTTGCTGTTGTGGAGTGGCCAGCCAAATGAGGAAGGTGATGAGAAAGGGCAAAAGAGAAGAGACTCTGTCAGTGTCATTACCAAAAATGAAGGAGAAGGAAACCATGTAGTTGGGTGGCCACCAATAAAATCATGGAGGAAAAAGATGCTTCATCAACACCACGGCGTCGGCCATGATCATCACCATCATCATCAGTACCCTCATCACCAGAATCAGATATTGGAAGCTAATTCCATGCCCATGTCCATGTTGGTGAAGGTGAAGATGGAAGGGGTGGGAATTGTTAGGAAGATCGATATAAGGCCTCATCACTCTTATCAGACGCTCAAAGACACCTTGATAACCATGTTTTCCAAATGCAAAAGATCAGGTGGCAAAGAGGGTGGTGGTGCAGGTGCAGAATATATACTTGCTTATCAGGACAAACAAGGAGATTGGCTGCTCGTTGCAGATGTTCCCTGGCAAACCTTCATCAAGTCCGTGCAGCGCCTGCAGATACTGAGGAAAGGAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0042221 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

241

Amino Acids

27.03

Weight (kDa)

9.3

Isoelectric Point (pI)

45.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003240)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32280 AT4G32280 AT4G32280
fragaria_vesca	FvH4_1g02700 FvH4_2g28970
malus_domestica	MD02G1027600.v1.1 MD08G1151300.v1.1 MD15G1169100.v1.1
prunus_persica	Prupe.1G481700_v2.0.a1 Prupe.1G481700_v2.0.a1 Prupe.1G481700_v2.0.a1 Prupe.7G247500_v2.0.a1
pyrus_communis	pycom02g02260 pycom08g12740 pycom15g15080
rosa_chinensis	RchiOBHm_Chr2g0087791 RchiOBHm_Chr6g0297821
rosa_laevigata	RLG00000011558 RLG00000015900
rosa_multiflora	Rmu_co8358427.1_g000001 Rmu_sc0003137.1_g000004 Rmu_sc0008385.1_g000003
rosa_roxburghii	Rroxscaffold_2G00153220 Rroxscaffold_7G00170170 Rroxscaffold_7G00179020
rosa_rugosa	Rorug01G0478700 Rorug06G0275700
rosa_samantha	Rh2AG033100 Rh2BG032200 Rh2CG032900 Rh2DG032700 Rh6AG386400 Rh6BG395000 Rh6CG400700 Rh6DG387100
rosa_wichuraiana	Rw2G002580 Rw6G033680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	590
Acc16I	TGCGCA	1 cut(s)	68
Acc36I	ACCTGC	1 cut(s)	590
AcoI	YGGCCR	3 cut(s)	223, 323, 376
AcyI	GRCGYC	1 cut(s)	372
AfaI	GTAC	1 cut(s)	404
AfiI	CCNNNNNNNGG	1 cut(s)	53
AjnI	CCWGG	1 cut(s)	665
AjuI	GAANNNNNNNTTGG	2 cut(s)	410, 442
AluBI	AGCT	2 cut(s)	7, 434
AluI	AGCT	2 cut(s)	7, 434
Alw21I	GWGCWC	1 cut(s)	9
Alw26I	GTCTC	1 cut(s)	261
AlwNI	CAGNNNCTG	2 cut(s)	697, 706
AoxI	GGCC	4 cut(s)	223, 323, 376, 509
ApeKI	GCWGC	2 cut(s)	646, 691
AspLEI	GCGC	3 cut(s)	69, 153, 696
AsuHPI	GGTGA	5 cut(s)	254, 380, 404, 472, 478
AsuII	TTCGAA	1 cut(s)	142
BalI	TGGCCA	2 cut(s)	225, 325
BanII	GRGCYC	1 cut(s)	9
Bbv12I	GWGCWC	1 cut(s)	9
BbvI	GCAGC	2 cut(s)	633, 703
BccI	CCATC	3 cut(s)	74, 399, 466
BceAI	ACGGC	1 cut(s)	385
BcgI	CGANNNNNNTGC	2 cut(s)	184, 218
BciT130I	CCWGG	1 cut(s)	667
BclI	TGATCA	1 cut(s)	382
BcoDI	GTCTC	1 cut(s)	261
BfmI	CTRYAG	1 cut(s)	698
BfoI	RGCGCY	1 cut(s)	697
BfuAI	ACCTGC	1 cut(s)	590
BisI	GCNGC	2 cut(s)	647, 692
BlsI	GCNGC	2 cut(s)	648, 693
Bme1390I	CCNGG	1 cut(s)	667
BmrFI	CCNGG	1 cut(s)	667
BmsI	GCATC	1 cut(s)	342
Bpu14I	TTCGAA	1 cut(s)	142
Bsa29I	ATCGAT	1 cut(s)	501
BsaHI	GRCGYC	1 cut(s)	372
BsaJI	CCNNGG	3 cut(s)	73, 367, 665
Bsc4I	CCNNNNNNNGG	1 cut(s)	53
Bse1I	ACTGG	1 cut(s)	35
BseBI	CCWGG	1 cut(s)	667
BseCI	ATCGAT	1 cut(s)	501
BseDI	CCNNGG	3 cut(s)	73, 367, 665
BseGI	GGATG	1 cut(s)	85
BseLI	CCNNNNNNNGG	1 cut(s)	53
BseMII	CTCAG	1 cut(s)	698
BseNI	ACTGG	1 cut(s)	35
BseXI	GCAGC	2 cut(s)	633, 703
BsgI	GTGCAG	3 cut(s)	618, 624, 710
BshFI	GGCC	4 cut(s)	225, 325, 378, 511
BshVI	ATCGAT	1 cut(s)	501
BsiHKAI	GWGCWC	1 cut(s)	9
BsiSI	CCGG	1 cut(s)	183
BslI	CCNNNNNNNGG	1 cut(s)	53
BsmAI	GTCTC	1 cut(s)	261
BsnI	GGCC	4 cut(s)	225, 325, 378, 511
Bsp119I	TTCGAA	1 cut(s)	142
Bsp1286I	GDGCHC	1 cut(s)	9
Bsp143I	GATC	3 cut(s)	382, 498, 572
Bsp19I	CCATGG	1 cut(s)	73
BspANI	GGCC	4 cut(s)	225, 325, 378, 511
BspCNI	CTCAG	1 cut(s)	699
BspDI	ATCGAT	1 cut(s)	501
BspMAI	CTGCAG	1 cut(s)	702
BspMI	ACCTGC	1 cut(s)	590
BspQI	GCTCTTC	1 cut(s)	36
BspT104I	TTCGAA	1 cut(s)	142
BsrI	ACTGG	1 cut(s)	35
BssECI	CCNNGG	3 cut(s)	73, 367, 665
BssMI	GATC	3 cut(s)	382, 498, 572
BssNI	GRCGYC	1 cut(s)	372
BssT1I	CCWWGG	1 cut(s)	73
Bst2UI	CCWGG	1 cut(s)	667
Bst6I	CTCTTC	2 cut(s)	36, 259
BstACI	GRCGYC	1 cut(s)	372
BstAPI	GCANNNNNTGC	1 cut(s)	697
BstBI	TTCGAA	1 cut(s)	142
BstC8I	GCNNGC	2 cut(s)	227, 698
BstDEI	CTNAG	1 cut(s)	707
BstDSI	CCRYGG	2 cut(s)	73, 367
BstENI	CCTNNNNNAGG	1 cut(s)	51
BstF5I	GGATG	1 cut(s)	85
BstH2I	RGCGCY	1 cut(s)	697
BstHHI	GCGC	3 cut(s)	69, 153, 696
BstKTI	GATC	3 cut(s)	385, 501, 575
BstMAI	GTCTC	1 cut(s)	261
BstMBI	GATC	3 cut(s)	382, 498, 572
BstMWI	GCNNNNNNNGC	1 cut(s)	697
BstNI	CCWGG	1 cut(s)	667
BstNSI	RCATGY	1 cut(s)	67
BstSCI	CCNGG	1 cut(s)	665
BstSFI	CTRYAG	1 cut(s)	698
BstV1I	GCAGC	2 cut(s)	633, 703
BstXI	CCANNNNNNTGG	2 cut(s)	80, 317
Bsu15I	ATCGAT	1 cut(s)	501
BsuRI	GGCC	4 cut(s)	225, 325, 378, 511
BsuTUI	ATCGAT	1 cut(s)	501
BtgI	CCRYGG	2 cut(s)	73, 367
BtsCI	GGATG	1 cut(s)	85
BtsIMutI	CAGTG	1 cut(s)	283
BveI	ACCTGC	1 cut(s)	590
Cac8I	GCNNGC	2 cut(s)	227, 698
CaiI	CAGNNNCTG	2 cut(s)	697, 706
CfoI	GCGC	3 cut(s)	69, 153, 696
ClaI	ATCGAT	1 cut(s)	501
CseI	GACGC	2 cut(s)	361, 538
Csp6I	GTAC	1 cut(s)	403
CspCI	CAANNNNNGTGG	2 cut(s)	571, 606
CviAII	CATG	9 cut(s)	64, 74, 311, 339, 380, 442, 448, 454, 553
CviQI	GTAC	1 cut(s)	403
DdeI	CTNAG	1 cut(s)	707
DpnI	GATC	3 cut(s)	384, 500, 574
DpnII	GATC	3 cut(s)	382, 498, 572
EaeI	YGGCCR	3 cut(s)	223, 323, 376
Eam1104I	CTCTTC	2 cut(s)	36, 259
EarI	CTCTTC	2 cut(s)	36, 259
Ecl136II	GAGCTC	1 cut(s)	7
Eco130I	CCWWGG	1 cut(s)	73
Eco147I	AGGCCT	1 cut(s)	511
Eco24I	GRGCYC	1 cut(s)	9
Eco32I	GATATC	1 cut(s)	102
Eco53kI	GAGCTC	1 cut(s)	7
EcoICRI	GAGCTC	1 cut(s)	7
EcoNI	CCTNNNNNAGG	1 cut(s)	51
EcoRII	CCWGG	1 cut(s)	665
EcoRV	GATATC	1 cut(s)	102
EcoT14I	CCWWGG	1 cut(s)	73
EcoT38I	GRGCYC	1 cut(s)	9
ErhI	CCWWGG	1 cut(s)	73
FaeI	CATG	9 cut(s)	67, 77, 314, 342, 383, 445, 451, 457, 556
FatI	CATG	9 cut(s)	63, 73, 310, 338, 379, 441, 447, 453, 552
FbaI	TGATCA	1 cut(s)	382
Fnu4HI	GCNGC	2 cut(s)	647, 692
FokI	GGATG	1 cut(s)	92
FriOI	GRGCYC	1 cut(s)	9
Fsp4HI	GCNGC	2 cut(s)	647, 692
FspI	TGCGCA	1 cut(s)	68
GlaI	GCGC	3 cut(s)	68, 152, 695
GluI	GCNGC	2 cut(s)	647, 692
HaeII	RGCGCY	1 cut(s)	697
HaeIII	GGCC	4 cut(s)	225, 325, 378, 511
HapII	CCGG	1 cut(s)	183
HgaI	GACGC	2 cut(s)	361, 538
HhaI	GCGC	3 cut(s)	69, 153, 696
Hin1I	GRCGYC	1 cut(s)	372
Hin1II	CATG	9 cut(s)	67, 77, 314, 342, 383, 445, 451, 457, 556
Hin6I	GCGC	3 cut(s)	67, 151, 694
HinP1I	GCGC	3 cut(s)	67, 151, 694
HinfI	GANTC	3 cut(s)	191, 269, 418
HpaII	CCGG	1 cut(s)	183
HphI	GGTGA	5 cut(s)	254, 380, 404, 472, 478
Hpy166II	GTNNAC	1 cut(s)	40
Hpy188I	TCNGA	2 cut(s)	423, 528
Hpy188III	TCNNGA	1 cut(s)	626
Hpy8I	GTNNAC	1 cut(s)	40
Hpy99I	CGWCG	1 cut(s)	377
HpyAV	CCTTC	6 cut(s)	233, 290, 296, 457, 470, 685
HpyCH4V	TGCA	6 cut(s)	567, 599, 605, 656, 691, 700
HpyF10VI	GCNNNNNNNGC	1 cut(s)	697
HpyF3I	CTNAG	1 cut(s)	707
Hsp92I	GRCGYC	1 cut(s)	372
Hsp92II	CATG	9 cut(s)	67, 77, 314, 342, 383, 445, 451, 457, 556
HspAI	GCGC	3 cut(s)	67, 151, 694
Ksp22I	TGATCA	1 cut(s)	382
Kzo9I	GATC	3 cut(s)	382, 498, 572
LguI	GCTCTTC	1 cut(s)	36
LmnI	GCTCC	2 cut(s)	4, 12
Lsp1109I	GCAGC	2 cut(s)	633, 703
LweI	GCATC	1 cut(s)	342
MalI	GATC	3 cut(s)	384, 500, 574
MboI	GATC	3 cut(s)	382, 498, 572
MboII	GAAGA	5 cut(s)	23, 103, 276, 481, 508
MfeI	CAATTG	1 cut(s)	11
MhlI	GDGCHC	1 cut(s)	9
MlsI	TGGCCA	2 cut(s)	225, 325
MluCI	AATT	3 cut(s)	11, 436, 486
MluNI	TGGCCA	2 cut(s)	225, 325
MlyI	GAGTC	2 cut(s)	200, 263
MnlI	CCTC	7 cut(s)	229, 336, 417, 522, 580, 702, 710
Mox20I	TGGCCA	2 cut(s)	225, 325
MscI	TGGCCA	2 cut(s)	225, 325
MseI	TTAA	1 cut(s)	51
MslI	CAYNNNNRTG	4 cut(s)	78, 446, 452, 458
Msp20I	TGGCCA	2 cut(s)	225, 325
MspI	CCGG	1 cut(s)	183
MspR9I	CCNGG	1 cut(s)	667
MunI	CAATTG	1 cut(s)	11
MvaI	CCWGG	1 cut(s)	667
MwoI	GCNNNNNNNGC	1 cut(s)	697
NcoI	CCATGG	1 cut(s)	73
NdeII	GATC	3 cut(s)	382, 498, 572
NlaIII	CATG	9 cut(s)	67, 77, 314, 342, 383, 445, 451, 457, 556
NsbI	TGCGCA	1 cut(s)	68
NspI	RCATGY	1 cut(s)	67
NspV	TTCGAA	1 cut(s)	142
PaqCI	CACCTGC	1 cut(s)	590
PceI	AGGCCT	1 cut(s)	511
PciSI	GCTCTTC	1 cut(s)	36
PfeI	GAWTC	1 cut(s)	418
PflFI	GACNNNGTC	1 cut(s)	272
PkrI	GCNGC	2 cut(s)	648, 693
PleI	GAGTC	2 cut(s)	199, 263
PpsI	GAGTC	2 cut(s)	199, 263
Psp124BI	GAGCTC	1 cut(s)	9
Psp6I	CCWGG	1 cut(s)	665
PspGI	CCWGG	1 cut(s)	665
PstI	CTGCAG	1 cut(s)	702
PstNI	CAGNNNCTG	2 cut(s)	697, 706
PsyI	GACNNNGTC	1 cut(s)	272
RsaI	GTAC	1 cut(s)	404
RsaNI	GTAC	1 cut(s)	403
RseI	CAYNNNNRTG	4 cut(s)	78, 446, 452, 458
SacI	GAGCTC	1 cut(s)	9
SapI	GCTCTTC	1 cut(s)	36
SaqAI	TTAA	1 cut(s)	51
SatI	GCNGC	2 cut(s)	647, 692
Sau3AI	GATC	3 cut(s)	382, 498, 572
SchI	GAGTC	2 cut(s)	200, 263
ScrFI	CCNGG	1 cut(s)	667
SduI	GDGCHC	1 cut(s)	9
SetI	ASST	9 cut(s)	9, 244, 436, 468, 545, 580, 604, 677, 721
SfaNI	GCATC	1 cut(s)	342
SfcI	CTRYAG	1 cut(s)	698
SfuI	TTCGAA	1 cut(s)	142
SmiMI	CAYNNNNRTG	4 cut(s)	78, 446, 452, 458
Sse9I	AATT	3 cut(s)	11, 436, 486
SseBI	AGGCCT	1 cut(s)	511
SstI	GAGCTC	1 cut(s)	9
StuI	AGGCCT	1 cut(s)	511
StyD4I	CCNGG	1 cut(s)	665
StyI	CCWWGG	1 cut(s)	73
TaqI	TCGA	3 cut(s)	142, 194, 501
TasI	AATT	3 cut(s)	11, 436, 486
TfiI	GAWTC	1 cut(s)	418
Tru1I	TTAA	1 cut(s)	51
Tru9I	TTAA	1 cut(s)	51
TscAI	CASTG	1 cut(s)	283
TseI	GCWGC	2 cut(s)	646, 691
TspDTI	ATGAA	3 cut(s)	309, 347, 667
TspGWI	ACGGA	1 cut(s)	676
TspRI	CASTG	1 cut(s)	283
Tth111I	GACNNNGTC	1 cut(s)	272
XagI	CCTNNNNNAGG	1 cut(s)	51
XceI	RCATGY	1 cut(s)	67
XcmI	CCANNNNNNNNNTGG	2 cut(s)	336, 454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.