Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0003240

Physical Location & Seq

Genomic Coordinates Reverse (-)

11297306 .. 11298671

Gene Structure 1366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g12740.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGAGCTTCAGTTGGGTCTGGCTCTAGCTCTTCCTGACCATCACAGTCCTGTCAAAAGGGTTGACATGAATGTCGTTAATTGCAGCATCGAGAAAAAAGAGATGGTGGGTTTGGAGAGCAAAAACCAAGTTGGGAATTACAAGCGTAGTTTTGATGTGGCTTTTGAGAAGAGTAGCAGTACTGGTGCTGGAAATGAATCGAAGATGTTGGCTTTGTTGTTGTGGAATGATCAGCCAAATGAGGAAGATGAAGATGATAAGGGGCGAAAGAGAAGAAACTCTTGCAGGTCCATAATCAAGAATGATGATGGAGGAAATCATGTAGTTGGTTGGCCACCAATTAAATCATGGAGGAAAAAGATGCATCATGATCAACACCATCAGTATTACCCTCTCCAGAATAATCAGATGGCTAATAACTATAAGGAAAACGAAAACGATGGCTCAGCAGCAGCAGCGAATAATTCCATGTACGTAAAGGTGAAGATGGAAGGAGAGGGAATTGTGAGGAAGATCGACATAAATCTGCATAATTCTTTTCAGATGCTCAGAGACACCTTGATTACCATGTTTTCCATATGCAAAAGCAAAGAGGGTGGTGCTGCAGCTGATTATATACTCATTTATCAAGACAAACAAGGAGATTGGCTGCTCGCTGAAGATGTTCCCTGGCAAACCTTCATCGAGTCCGTGCAGCGCCTGCAGATAGTAAGGAATGGTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0042221 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

242

Amino Acids

27.44

Weight (kDa)

6.45

Isoelectric Point (pI)

50.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003240)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32280 AT4G32280 AT4G32280
fragaria_vesca	FvH4_1g02700 FvH4_2g28970
malus_domestica	MD02G1027600.v1.1 MD08G1151300.v1.1 MD15G1169100.v1.1
prunus_persica	Prupe.1G481700_v2.0.a1 Prupe.1G481700_v2.0.a1 Prupe.1G481700_v2.0.a1 Prupe.7G247500_v2.0.a1
pyrus_communis	pycom02g02260 pycom08g12740 pycom15g15080
rosa_chinensis	RchiOBHm_Chr2g0087791 RchiOBHm_Chr6g0297821
rosa_laevigata	RLG00000011558 RLG00000015900
rosa_multiflora	Rmu_co8358427.1_g000001 Rmu_sc0003137.1_g000004 Rmu_sc0008385.1_g000003
rosa_roxburghii	Rroxscaffold_2G00153220 Rroxscaffold_7G00170170 Rroxscaffold_7G00179020
rosa_rugosa	Rorug01G0478700 Rorug06G0275700
rosa_samantha	Rh2AG033100 Rh2BG032200 Rh2CG032900 Rh2DG032700 Rh6AG386400 Rh6BG395000 Rh6CG400700 Rh6DG387100
rosa_wichuraiana	Rw2G002580 Rw6G033680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	71
Acc36I	ACCTGC	1 cut(s)	276
AcoI	YGGCCR	1 cut(s)	332
AcuI	CTGAAG	1 cut(s)	678
AfaI	GTAC	2 cut(s)	181, 473
AjnI	CCWGG	1 cut(s)	668
AluBI	AGCT	3 cut(s)	7, 29, 608
AluI	AGCT	3 cut(s)	7, 29, 608
Alw26I	GTCTC	1 cut(s)	546
AlwNI	CAGNNNCTG	1 cut(s)	700
AoxI	GGCC	1 cut(s)	332
ApeKI	GCWGC	8 cut(s)	84, 449, 452, 455, 602, 605, 649, 694
Asp700I	GAANNNNTTC	1 cut(s)	663
AspLEI	GCGC	1 cut(s)	699
AspS9I	GGNCC	1 cut(s)	288
AsuHPI	GGTGA	1 cut(s)	493
AvaII	GGWCC	1 cut(s)	288
BalI	TGGCCA	1 cut(s)	334
BbvI	GCAGC	8 cut(s)	96, 461, 464, 467, 589, 617, 636, 706
BccI	CCATC	7 cut(s)	48, 97, 302, 387, 403, 434, 481
BciT130I	CCWGG	1 cut(s)	670
BclI	TGATCA	2 cut(s)	229, 370
BcoDI	GTCTC	1 cut(s)	546
BfaI	CTAG	1 cut(s)	26
BfmI	CTRYAG	2 cut(s)	603, 701
BfoI	RGCGCY	1 cut(s)	700
BfuAI	ACCTGC	1 cut(s)	276
BisI	GCNGC	8 cut(s)	85, 450, 453, 456, 603, 606, 650, 695
BlpI	GCTNAGC	1 cut(s)	445
BlsI	GCNGC	8 cut(s)	86, 451, 454, 457, 604, 607, 651, 696
BmcAI	AGTACT	1 cut(s)	181
Bme1390I	CCNGG	1 cut(s)	670
Bme18I	GGWCC	1 cut(s)	288
BmgT120I	GGNCC	1 cut(s)	288
BmrFI	CCNGG	1 cut(s)	670
BmsI	GCATC	4 cut(s)	96, 351, 373, 534
BpmI	CTGGAG	1 cut(s)	380
Bpu1102I	GCTNAGC	1 cut(s)	445
BsaAI	YACGTR	1 cut(s)	475
BsaJI	CCNNGG	1 cut(s)	668
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bse1I	ACTGG	1 cut(s)	187
BseBI	CCWGG	1 cut(s)	670
BseDI	CCNNGG	1 cut(s)	668
BseMII	CTCAG	2 cut(s)	459, 562
BseNI	ACTGG	1 cut(s)	187
BseXI	GCAGC	8 cut(s)	96, 461, 464, 467, 589, 617, 636, 706
BsgI	GTGCAG	1 cut(s)	713
BshFI	GGCC	1 cut(s)	334
BsmAI	GTCTC	1 cut(s)	546
BsnI	GGCC	1 cut(s)	334
Bsp143I	GATC	3 cut(s)	229, 370, 513
Bsp1720I	GCTNAGC	1 cut(s)	445
BspANI	GGCC	1 cut(s)	334
BspCNI	CTCAG	2 cut(s)	458, 561
BspHI	TCATGA	1 cut(s)	367
BspMAI	CTGCAG	2 cut(s)	607, 705
BspMI	ACCTGC	1 cut(s)	276
BspQI	GCTCTTC	1 cut(s)	36
BsrI	ACTGG	1 cut(s)	187
BssECI	CCNNGG	1 cut(s)	668
BssMI	GATC	3 cut(s)	229, 370, 513
Bst2UI	CCWGG	1 cut(s)	670
Bst4CI	ACNGT	1 cut(s)	47
Bst6I	CTCTTC	2 cut(s)	36, 164
BstAPI	GCANNNNNTGC	1 cut(s)	700
BstBAI	YACGTR	1 cut(s)	475
BstC8I	GCNNGC	2 cut(s)	654, 701
BstDEI	CTNAG	2 cut(s)	445, 548
BstH2I	RGCGCY	1 cut(s)	700
BstHHI	GCGC	1 cut(s)	699
BstKTI	GATC	3 cut(s)	232, 373, 516
BstMAI	GTCTC	1 cut(s)	546
BstMBI	GATC	3 cut(s)	229, 370, 513
BstMWI	GCNNNNNNNGC	2 cut(s)	455, 700
BstNI	CCWGG	1 cut(s)	670
BstSCI	CCNGG	1 cut(s)	668
BstSFI	CTRYAG	2 cut(s)	603, 701
BstSNI	TACGTA	1 cut(s)	475
BstV1I	GCAGC	8 cut(s)	96, 461, 464, 467, 589, 617, 636, 706
BsuRI	GGCC	1 cut(s)	334
BveI	ACCTGC	1 cut(s)	276
Cac8I	GCNNGC	2 cut(s)	654, 701
CaiI	CAGNNNCTG	1 cut(s)	700
CciI	TCATGA	1 cut(s)	367
CfoI	GCGC	1 cut(s)	699
Cfr13I	GGNCC	1 cut(s)	288
Csp6I	GTAC	2 cut(s)	180, 472
CspCI	CAANNNNNGTGG	2 cut(s)	577, 612
CviAII	CATG	6 cut(s)	67, 320, 348, 368, 469, 568
CviQI	GTAC	2 cut(s)	180, 472
DdeI	CTNAG	2 cut(s)	445, 548
DpnI	GATC	3 cut(s)	231, 372, 515
DpnII	GATC	3 cut(s)	229, 370, 513
DrdI	GACNNNNNNGTC	1 cut(s)	71
DseDI	GACNNNNNNGTC	1 cut(s)	71
EaeI	YGGCCR	1 cut(s)	332
Eam1104I	CTCTTC	2 cut(s)	36, 164
EarI	CTCTTC	2 cut(s)	36, 164
Eco105I	TACGTA	1 cut(s)	475
Eco47I	GGWCC	1 cut(s)	288
Eco57I	CTGAAG	1 cut(s)	678
EcoRII	CCWGG	1 cut(s)	668
EcoT22I	ATGCAT	1 cut(s)	366
FaeI	CATG	6 cut(s)	70, 323, 351, 371, 472, 571
FalI	AAGNNNNNCTT	2 cut(s)	265, 297
FatI	CATG	6 cut(s)	66, 319, 347, 367, 468, 567
FauNDI	CATATG	1 cut(s)	578
FbaI	TGATCA	2 cut(s)	229, 370
Fnu4HI	GCNGC	8 cut(s)	85, 450, 453, 456, 603, 606, 650, 695
Fsp4HI	GCNGC	8 cut(s)	85, 450, 453, 456, 603, 606, 650, 695
FspBI	CTAG	1 cut(s)	26
GlaI	GCGC	1 cut(s)	698
GluI	GCNGC	8 cut(s)	85, 450, 453, 456, 603, 606, 650, 695
GsuI	CTGGAG	1 cut(s)	380
HaeII	RGCGCY	1 cut(s)	700
HaeIII	GGCC	1 cut(s)	334
HhaI	GCGC	1 cut(s)	699
Hin1II	CATG	6 cut(s)	70, 323, 351, 371, 472, 571
Hin6I	GCGC	1 cut(s)	697
HinP1I	GCGC	1 cut(s)	697
HincII	GTYRAC	1 cut(s)	64
HindII	GTYRAC	1 cut(s)	64
HinfI	GANTC	2 cut(s)	197, 686
HphI	GGTGA	1 cut(s)	493
Hpy166II	GTNNAC	1 cut(s)	64
Hpy188I	TCNGA	3 cut(s)	408, 543, 551
Hpy188III	TCNNGA	6 cut(s)	35, 91, 298, 368, 397, 629
Hpy8I	GTNNAC	1 cut(s)	64
HpyAV	CCTTC	2 cut(s)	485, 688
HpyCH4III	ACNGT	1 cut(s)	47
HpyCH4IV	ACGT	1 cut(s)	474
HpyCH4V	TGCA	8 cut(s)	84, 285, 364, 529, 582, 605, 694, 703
HpyF10VI	GCNNNNNNNGC	2 cut(s)	455, 700
HpyF3I	CTNAG	2 cut(s)	445, 548
HpySE526I	ACGT	1 cut(s)	474
Hsp92II	CATG	6 cut(s)	70, 323, 351, 371, 472, 571
HspAI	GCGC	1 cut(s)	697
Ksp22I	TGATCA	2 cut(s)	229, 370
Kzo9I	GATC	3 cut(s)	229, 370, 513
LguI	GCTCTTC	1 cut(s)	36
LmnI	GCTCC	1 cut(s)	4
Lsp1109I	GCAGC	8 cut(s)	96, 461, 464, 467, 589, 617, 636, 706
LweI	GCATC	4 cut(s)	96, 351, 373, 534
MaeI	CTAG	1 cut(s)	26
MaeII	ACGT	1 cut(s)	474
MalI	GATC	3 cut(s)	231, 372, 515
MboI	GATC	3 cut(s)	229, 370, 513
MboII	GAAGA	9 cut(s)	23, 181, 214, 257, 263, 285, 496, 523, 671
MlsI	TGGCCA	1 cut(s)	334
MluCI	AATT	6 cut(s)	79, 136, 339, 463, 501, 532
MluNI	TGGCCA	1 cut(s)	334
MlyI	GAGTC	1 cut(s)	695
MnlI	CCTC	7 cut(s)	235, 305, 345, 402, 490, 501, 586
Mox20I	TGGCCA	1 cut(s)	334
Mph1103I	ATGCAT	1 cut(s)	366
MroXI	GAANNNNTTC	1 cut(s)	663
MscI	TGGCCA	1 cut(s)	334
MseI	TTAA	2 cut(s)	78, 342
Msp20I	TGGCCA	1 cut(s)	334
MspA1I	CMGCKG	1 cut(s)	608
MspR9I	CCNGG	1 cut(s)	670
MvaI	CCWGG	1 cut(s)	670
MwoI	GCNNNNNNNGC	2 cut(s)	455, 700
NdeI	CATATG	1 cut(s)	578
NdeII	GATC	3 cut(s)	229, 370, 513
NlaIII	CATG	6 cut(s)	70, 323, 351, 371, 472, 571
NsiI	ATGCAT	1 cut(s)	366
PagI	TCATGA	1 cut(s)	367
PciSI	GCTCTTC	1 cut(s)	36
PdmI	GAANNNNTTC	1 cut(s)	663
PfeI	GAWTC	1 cut(s)	197
PkrI	GCNGC	8 cut(s)	86, 451, 454, 457, 604, 607, 651, 696
PleI	GAGTC	1 cut(s)	694
PpsI	GAGTC	1 cut(s)	694
Ppu21I	YACGTR	1 cut(s)	475
Psp6I	CCWGG	1 cut(s)	668
PspGI	CCWGG	1 cut(s)	668
PspPI	GGNCC	1 cut(s)	288
PstI	CTGCAG	2 cut(s)	607, 705
PstNI	CAGNNNCTG	1 cut(s)	700
PvuII	CAGCTG	1 cut(s)	608
RsaI	GTAC	2 cut(s)	181, 473
RsaNI	GTAC	2 cut(s)	180, 472
SapI	GCTCTTC	1 cut(s)	36
SaqAI	TTAA	2 cut(s)	78, 342
SatI	GCNGC	8 cut(s)	85, 450, 453, 456, 603, 606, 650, 695
Sau3AI	GATC	3 cut(s)	229, 370, 513
Sau96I	GGNCC	1 cut(s)	288
ScaI	AGTACT	1 cut(s)	181
SchI	GAGTC	1 cut(s)	695
ScrFI	CCNGG	1 cut(s)	670
SetI	ASST	8 cut(s)	9, 31, 290, 477, 483, 560, 610, 680
SfaNI	GCATC	4 cut(s)	96, 351, 373, 534
SfcI	CTRYAG	2 cut(s)	603, 701
SinI	GGWCC	1 cut(s)	288
SnaBI	TACGTA	1 cut(s)	475
Sse9I	AATT	6 cut(s)	79, 136, 339, 463, 501, 532
SspMI	CTAG	1 cut(s)	26
StyD4I	CCNGG	1 cut(s)	668
TaaI	ACNGT	1 cut(s)	47
TaiI	ACGT	1 cut(s)	477
TaqI	TCGA	4 cut(s)	90, 200, 516, 684
TasI	AATT	6 cut(s)	79, 136, 339, 463, 501, 532
TatI	WGTACW	1 cut(s)	179
TfiI	GAWTC	1 cut(s)	197
Tru1I	TTAA	2 cut(s)	78, 342
Tru9I	TTAA	2 cut(s)	78, 342
TseI	GCWGC	8 cut(s)	84, 449, 452, 455, 602, 605, 649, 694
TspDTI	ATGAA	4 cut(s)	83, 210, 264, 670
TspGWI	ACGGA	1 cut(s)	679
VpaK11BI	GGWCC	1 cut(s)	288
XcmI	CCANNNNNNNNNTGG	1 cut(s)	345
XmnI	GAANNNNTTC	1 cut(s)	663
XspI	CTAG	1 cut(s)	26
ZrmI	AGTACT	1 cut(s)	181
Zsp2I	ATGCAT	1 cut(s)	366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.