Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003137.1

Orthogroup ID

OG0003240

Physical Location & Seq

Genomic Coordinates Forward (+)

14423 .. 15296

Gene Structure 874 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003137.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

atggagcttcaactgggtttggctctgtcgcttccggttcatcagatcgctcctgtcaaagggtttgatgtaaccagtcatggggtgatgggcttggatttatggagctatggatgctgcttggagagcaaaaagaagcgcagtcacgacacggctttcgagaagattggaagtgacgatgagtcgaagatgttgcctttgtttttgtggtatggccagccggatgaggaagacgatgatggcaaggggcaaaagaaaagagactcttgcagtctcatcgataccaatgatgatggagaaggaaaccaagttgttgggtggccaccaattaaatcatggaggaagaagatgttttttcctgatcatcaacaccatggtcgtggccgccacgatctccagaatcatcagaatatagtggcaaaggaaaatgatgggccagaaaattccatgtacgtaaaggtgaagatggaaggagtgggaattctgaggaagatagatataaagctgcatcactcttatcagacacttagagactccttgatagccatgtttgccaaatgttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AUX_IAA LRR_1 LRR_4 LRR_8 Malectin

Protein Analysis

187

Amino Acids

21.24

Weight (kDa)

6.35

Isoelectric Point (pI)

40.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003240)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32280 AT4G32280 AT4G32280
fragaria_vesca	FvH4_1g02700 FvH4_2g28970
malus_domestica	MD02G1027600.v1.1 MD08G1151300.v1.1 MD15G1169100.v1.1
prunus_persica	Prupe.1G481700_v2.0.a1 Prupe.1G481700_v2.0.a1 Prupe.1G481700_v2.0.a1 Prupe.7G247500_v2.0.a1
pyrus_communis	pycom02g02260 pycom08g12740 pycom15g15080
rosa_chinensis	RchiOBHm_Chr2g0087791 RchiOBHm_Chr6g0297821
rosa_laevigata	RLG00000011558 RLG00000015900
rosa_multiflora	Rmu_co8358427.1_g000001 Rmu_sc0003137.1_g000004 Rmu_sc0008385.1_g000003
rosa_roxburghii	Rroxscaffold_2G00153220 Rroxscaffold_7G00170170 Rroxscaffold_7G00179020
rosa_rugosa	Rorug01G0478700 Rorug06G0275700
rosa_samantha	Rh2AG033100 Rh2BG032200 Rh2CG032900 Rh2DG032700 Rh6AG386400 Rh6BG395000 Rh6CG400700 Rh6DG387100
rosa_wichuraiana	Rw2G002580 Rw6G033680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	385
AcoI	YGGCCR	3 cut(s)	214, 320, 382
AcsI	RAATTY	2 cut(s)	442, 480
AfaI	GTAC	1 cut(s)	452
AfiI	CCNNNNNNNGG	2 cut(s)	59, 81
AgsI	TTSAA	1 cut(s)	11
AhdI	GACNNNNNGTC	1 cut(s)	181
AluBI	AGCT	3 cut(s)	7, 108, 505
AluI	AGCT	3 cut(s)	7, 108, 505
Alw26I	GTCTC	3 cut(s)	255, 278, 525
AoxI	GGCC	4 cut(s)	214, 320, 382, 434
ApeKI	GCWGC	2 cut(s)	117, 505
ApoI	RAATTY	2 cut(s)	442, 480
ArsI	GACNNNNNNTTYG	2 cut(s)	140, 172
AspLEI	GCGC	1 cut(s)	141
AspS9I	GGNCC	1 cut(s)	434
AsuHPI	GGTGA	2 cut(s)	97, 472
BalI	TGGCCA	2 cut(s)	216, 322
BbsI	GAAGAC	1 cut(s)	237
BbvI	GCAGC	2 cut(s)	104, 492
BccI	CCATC	5 cut(s)	82, 233, 287, 425, 460
BceAI	ACGGC	1 cut(s)	168
BcgI	CGANNNNNNTGC	4 cut(s)	175, 209, 259, 293
BclI	TGATCA	1 cut(s)	361
BcoDI	GTCTC	3 cut(s)	255, 278, 525
BisI	GCNGC	3 cut(s)	118, 385, 506
BlsI	GCNGC	3 cut(s)	119, 386, 507
BmeRI	GACNNNNNGTC	1 cut(s)	181
BmgT120I	GGNCC	1 cut(s)	434
BmrI	ACTGGG	1 cut(s)	23
BmsI	GCATC	2 cut(s)	104, 517
BmuI	ACTGGG	1 cut(s)	23
BpiI	GAAGAC	1 cut(s)	237
BpmI	CTGGAG	1 cut(s)	380
Bsa29I	ATCGAT	1 cut(s)	279
BsaAI	YACGTR	1 cut(s)	454
BsaJI	CCNNGG	1 cut(s)	373
BsaWI	WCCGGW	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	2 cut(s)	59, 81
Bse1I	ACTGG	2 cut(s)	18, 75
BseCI	ATCGAT	1 cut(s)	279
BseDI	CCNNGG	1 cut(s)	373
BseGI	GGATG	2 cut(s)	119, 229
BseLI	CCNNNNNNNGG	2 cut(s)	59, 81
BseMII	CTCAG	1 cut(s)	476
BseNI	ACTGG	2 cut(s)	18, 75
BseXI	GCAGC	2 cut(s)	104, 492
BshFI	GGCC	4 cut(s)	216, 322, 384, 436
BshVI	ATCGAT	1 cut(s)	279
BsiSI	CCGG	2 cut(s)	35, 221
BslI	CCNNNNNNNGG	2 cut(s)	59, 81
BsmAI	GTCTC	3 cut(s)	255, 278, 525
BsnI	GGCC	4 cut(s)	216, 322, 384, 436
Bsp143I	GATC	3 cut(s)	45, 361, 391
Bsp19I	CCATGG	1 cut(s)	373
BspACI	CCGC	1 cut(s)	385
BspANI	GGCC	4 cut(s)	216, 322, 384, 436
BspCNI	CTCAG	1 cut(s)	477
BspDI	ATCGAT	1 cut(s)	279
BsrI	ACTGG	2 cut(s)	18, 75
BssECI	CCNNGG	1 cut(s)	373
BssMI	GATC	3 cut(s)	45, 361, 391
BssT1I	CCWWGG	1 cut(s)	373
BstBAI	YACGTR	1 cut(s)	454
BstC8I	GCNNGC	1 cut(s)	218
BstDEI	CTNAG	2 cut(s)	485, 527
BstDSI	CCRYGG	1 cut(s)	373
BstENI	CCTNNNNNAGG	1 cut(s)	57
BstF5I	GGATG	2 cut(s)	119, 229
BstHHI	GCGC	1 cut(s)	141
BstKTI	GATC	3 cut(s)	48, 364, 394
BstMAI	GTCTC	3 cut(s)	255, 278, 525
BstMBI	GATC	3 cut(s)	45, 361, 391
BstMWI	GCNNNNNNNGC	3 cut(s)	114, 126, 551
BstSNI	TACGTA	1 cut(s)	454
BstV1I	GCAGC	2 cut(s)	104, 492
BstV2I	GAAGAC	1 cut(s)	237
BstXI	CCANNNNNNTGG	2 cut(s)	314, 380
Bsu15I	ATCGAT	1 cut(s)	279
BsuRI	GGCC	4 cut(s)	216, 322, 384, 436
BsuTUI	ATCGAT	1 cut(s)	279
BtgI	CCRYGG	1 cut(s)	373
BtsCI	GGATG	2 cut(s)	119, 229
Cac8I	GCNNGC	1 cut(s)	218
CfoI	GCGC	1 cut(s)	141
Cfr13I	GGNCC	1 cut(s)	434
ClaI	ATCGAT	1 cut(s)	279
Csp6I	GTAC	1 cut(s)	451
CviAII	CATG	5 cut(s)	80, 336, 374, 448, 547
CviQI	GTAC	1 cut(s)	451
DdeI	CTNAG	2 cut(s)	485, 527
DpnI	GATC	3 cut(s)	47, 363, 393
DpnII	GATC	3 cut(s)	45, 361, 391
DriI	GACNNNNNGTC	1 cut(s)	181
EaeI	YGGCCR	3 cut(s)	214, 320, 382
Eam1105I	GACNNNNNGTC	1 cut(s)	181
Eco105I	TACGTA	1 cut(s)	454
Eco130I	CCWWGG	1 cut(s)	373
EcoNI	CCTNNNNNAGG	1 cut(s)	57
EcoRI	GAATTC	1 cut(s)	480
EcoT14I	CCWWGG	1 cut(s)	373
ErhI	CCWWGG	1 cut(s)	373
FaeI	CATG	5 cut(s)	83, 339, 377, 451, 550
FalI	AAGNNNNNCTT	2 cut(s)	250, 282
FatI	CATG	5 cut(s)	79, 335, 373, 447, 546
FbaI	TGATCA	1 cut(s)	361
Fnu4HI	GCNGC	3 cut(s)	118, 385, 506
FokI	GGATG	2 cut(s)	126, 236
Fsp4HI	GCNGC	3 cut(s)	118, 385, 506
GlaI	GCGC	1 cut(s)	140
GluI	GCNGC	3 cut(s)	118, 385, 506
GsuI	CTGGAG	1 cut(s)	380
HaeIII	GGCC	4 cut(s)	216, 322, 384, 436
HapII	CCGG	2 cut(s)	35, 221
HhaI	GCGC	1 cut(s)	141
Hin1II	CATG	5 cut(s)	83, 339, 377, 451, 550
Hin6I	GCGC	1 cut(s)	139
HinP1I	GCGC	1 cut(s)	139
HinfI	GANTC	4 cut(s)	182, 263, 400, 533
HpaII	CCGG	2 cut(s)	35, 221
HphI	GGTGA	2 cut(s)	97, 472
Hpy188I	TCNGA	4 cut(s)	45, 408, 486, 522
Hpy188III	TCNNGA	4 cut(s)	146, 160, 359, 397
HpyAV	CCTTC	2 cut(s)	293, 464
HpyCH4IV	ACGT	1 cut(s)	453
HpyCH4V	TGCA	2 cut(s)	270, 508
HpyF10VI	GCNNNNNNNGC	3 cut(s)	114, 126, 551
HpyF3I	CTNAG	2 cut(s)	485, 527
HpySE526I	ACGT	1 cut(s)	453
Hsp92II	CATG	5 cut(s)	83, 339, 377, 451, 550
HspAI	GCGC	1 cut(s)	139
Ksp22I	TGATCA	1 cut(s)	361
Kzo9I	GATC	3 cut(s)	45, 361, 391
LmnI	GCTCC	3 cut(s)	4, 55, 105
LpnPI	CCDG	8 cut(s)	48, 66, 88, 230, 234, 372, 410, 450
Lsp1109I	GCAGC	2 cut(s)	104, 492
LweI	GCATC	2 cut(s)	104, 517
MaeII	ACGT	1 cut(s)	453
MaeIII	GTNAC	3 cut(s)	70, 143, 173
MalI	GATC	3 cut(s)	47, 363, 393
MboI	GATC	3 cut(s)	45, 361, 391
MboII	GAAGA	7 cut(s)	175, 199, 242, 355, 358, 475, 502
MlsI	TGGCCA	2 cut(s)	216, 322
MluCI	AATT	3 cut(s)	327, 442, 480
MluNI	TGGCCA	2 cut(s)	216, 322
MlyI	GAGTC	3 cut(s)	191, 257, 527
MnlI	CCTC	3 cut(s)	220, 333, 480
Mox20I	TGGCCA	2 cut(s)	216, 322
MscI	TGGCCA	2 cut(s)	216, 322
MseI	TTAA	1 cut(s)	330
MslI	CAYNNNNRTG	1 cut(s)	378
Msp20I	TGGCCA	2 cut(s)	216, 322
MspI	CCGG	2 cut(s)	35, 221
MwoI	GCNNNNNNNGC	3 cut(s)	114, 126, 551
NcoI	CCATGG	1 cut(s)	373
NdeII	GATC	3 cut(s)	45, 361, 391
NlaIII	CATG	5 cut(s)	83, 339, 377, 451, 550
NmuCI	GTSAC	2 cut(s)	143, 173
PfeI	GAWTC	1 cut(s)	400
PkrI	GCNGC	3 cut(s)	119, 386, 507
PleI	GAGTC	3 cut(s)	190, 257, 527
PpsI	GAGTC	3 cut(s)	190, 257, 527
Ppu21I	YACGTR	1 cut(s)	454
PspPI	GGNCC	1 cut(s)	434
RsaI	GTAC	1 cut(s)	452
RsaNI	GTAC	1 cut(s)	451
RseI	CAYNNNNRTG	1 cut(s)	378
SaqAI	TTAA	1 cut(s)	330
SatI	GCNGC	3 cut(s)	118, 385, 506
Sau3AI	GATC	3 cut(s)	45, 361, 391
Sau96I	GGNCC	1 cut(s)	434
SchI	GAGTC	3 cut(s)	191, 257, 527
SetI	ASST	5 cut(s)	9, 110, 456, 462, 507
SfaNI	GCATC	2 cut(s)	104, 517
SmiMI	CAYNNNNRTG	1 cut(s)	378
SnaBI	TACGTA	1 cut(s)	454
Sse9I	AATT	3 cut(s)	327, 442, 480
SsiI	CCGC	1 cut(s)	385
StyI	CCWWGG	1 cut(s)	373
TaiI	ACGT	1 cut(s)	456
TaqI	TCGA	3 cut(s)	159, 185, 279
TasI	AATT	3 cut(s)	327, 442, 480
TauI	GCSGC	1 cut(s)	387
TfiI	GAWTC	1 cut(s)	400
Tru1I	TTAA	1 cut(s)	330
Tru9I	TTAA	1 cut(s)	330
TseFI	GTSAC	2 cut(s)	143, 173
TseI	GCWGC	2 cut(s)	117, 505
Tsp45I	GTSAC	2 cut(s)	143, 173
TspDTI	ATGAA	1 cut(s)	29
XagI	CCTNNNNNAGG	1 cut(s)	57
XapI	RAATTY	2 cut(s)	442, 480
XcmI	CCANNNNNNNNNTGG	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.