Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0003240

Physical Location & Seq

Genomic Coordinates Forward (+)

58743033 .. 58748109

Gene Structure 5077 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG400700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGAGCTTCAACTGGGTTTGGCTCTGTCGCTTCCGGTTCATCAGAACGCTCCTGTCAAAGGGTTTGATGTAACCAGTCATGGGGTGATGGGTTTGGATTTATGGAGCTATGGATGCTGCTTGCAGAGCAAAAAGAAGCGCAGTCGCGACACGGCTTTCGAGAAGATTGGAAATGACGATGAGTCGAAGATGTTGCCTTTGTTGTTGTGGCATGGCCAGCCGGATGAGGAAGACGATGATGGCAAGAGGCAAAAGAAAAGAGACTCTTGCAGTCTCATCGATACCAATGATGATGGAGAAGGAAACCAAGTTGTTGGGTGGCCACCAATTAAATCATGGAGGAAGAAGATGTTTTTTCCTGATCATCAACACCATGGTCGTGGCCGCCATGATCTCCAGAATCATCAGAATATAGTGGCAAAGGAAAATGATGGGCCAGAAAATTCCATGTACGTAAAGGTGAAGATGGAAGGAGTGGGAATTCTGAGGAAGATAGATATAAAGCTGCATCACTCTTATCAGACACTTAGAGACTCCTTGATAGCCATGTTTGCCAAATGCAAAGGATGTGAGAATGAGGATACTGCAGATTTTACTTTGGCTTATCAGGACGTACATGGAGATTGGTCGGTTGCTGGAGATGTTCCCTGGCAATTCCACCGGCGGCCTCCGTATCATCCGATGACTCAGGAACCAGACTCACGCGCTAGTACGCAGGACCCAGATTACCCAATCTACTCCTTCGGTCAATCAGCCCTTCACATACCATTTTCTCCGGCAGTCTTCGTCTTTTCACTAATTTCACCAGGCCATGACTCACCTCCCATGTCTTGCTCTCTTGTCCTTCGAATTAGAATTTTACCATCTGGGCATATACCATCTAGAAGATCACCATCAACAAACAAGGAGCACTATTCCATAACAGAGCTAGAGACAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AUX_IAA LRR_1 LRR_4 LRR_8 Malectin

Protein Analysis

313

Amino Acids

35.49

Weight (kDa)

6.18

Isoelectric Point (pI)

63.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	33 - 219	9.9e-28	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003240)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32280 AT4G32280 AT4G32280
fragaria_vesca	FvH4_1g02700 FvH4_2g28970
malus_domestica	MD02G1027600.v1.1 MD08G1151300.v1.1 MD15G1169100.v1.1
prunus_persica	Prupe.1G481700_v2.0.a1 Prupe.1G481700_v2.0.a1 Prupe.1G481700_v2.0.a1 Prupe.7G247500_v2.0.a1
pyrus_communis	pycom02g02260 pycom08g12740 pycom15g15080
rosa_chinensis	RchiOBHm_Chr2g0087791 RchiOBHm_Chr6g0297821
rosa_laevigata	RLG00000011558 RLG00000015900
rosa_multiflora	Rmu_co8358427.1_g000001 Rmu_sc0003137.1_g000004 Rmu_sc0008385.1_g000003
rosa_roxburghii	Rroxscaffold_2G00153220 Rroxscaffold_7G00170170 Rroxscaffold_7G00179020
rosa_rugosa	Rorug01G0478700 Rorug06G0275700
rosa_samantha	Rh2AG033100 Rh2BG032200 Rh2CG032900 Rh2DG032700 Rh6AG386400 Rh6BG395000 Rh6CG400700 Rh6DG387100
rosa_wichuraiana	Rw2G002580 Rw6G033680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	147, 705
AciI	CCGC	2 cut(s)	385, 664
AcoI	YGGCCR	3 cut(s)	214, 320, 382
AcsI	RAATTY	3 cut(s)	442, 480, 855
AfaI	GTAC	3 cut(s)	452, 615, 712
AfiI	CCNNNNNNNGG	2 cut(s)	59, 81
AgsI	TTSAA	1 cut(s)	11
AhdI	GACNNNNNGTC	1 cut(s)	181
AjnI	CCWGG	2 cut(s)	647, 805
AluBI	AGCT	4 cut(s)	7, 108, 505, 928
AluI	AGCT	4 cut(s)	7, 108, 505, 928
Alw21I	GWGCWC	1 cut(s)	912
Alw26I	GTCTC	4 cut(s)	255, 278, 525, 926
AoxI	GGCC	6 cut(s)	214, 320, 382, 434, 665, 808
ApeKI	GCWGC	2 cut(s)	117, 505
ApoI	RAATTY	3 cut(s)	442, 480, 855
ArsI	GACNNNNNNTTYG	2 cut(s)	140, 172
AspLEI	GCGC	2 cut(s)	141, 707
AspS9I	GGNCC	2 cut(s)	434, 718
AsuHPI	GGTGA	5 cut(s)	97, 472, 795, 810, 882
AsuII	TTCGAA	1 cut(s)	847
AvaII	GGWCC	1 cut(s)	718
BalI	TGGCCA	2 cut(s)	216, 322
BbsI	GAAGAC	2 cut(s)	237, 775
Bbv12I	GWGCWC	1 cut(s)	912
BbvI	GCAGC	2 cut(s)	104, 492
BccI	CCATC	8 cut(s)	82, 233, 287, 425, 460, 871, 886, 901
BceAI	ACGGC	1 cut(s)	168
BcgI	CGANNNNNNTGC	4 cut(s)	175, 209, 259, 293
BciT130I	CCWGG	2 cut(s)	649, 807
BciVI	GTATCC	1 cut(s)	574
BclI	TGATCA	1 cut(s)	361
BcoDI	GTCTC	4 cut(s)	255, 278, 525, 926
BfaI	CTAG	3 cut(s)	708, 882, 929
BfmI	CTRYAG	1 cut(s)	585
BfuI	GTATCC	1 cut(s)	574
BisI	GCNGC	4 cut(s)	118, 385, 506, 665
BlsI	GCNGC	4 cut(s)	119, 386, 507, 666
Bme1390I	CCNGG	2 cut(s)	649, 807
Bme18I	GGWCC	1 cut(s)	718
BmeRI	GACNNNNNGTC	1 cut(s)	181
BmgT120I	GGNCC	2 cut(s)	434, 718
BmiI	GGNNCC	2 cut(s)	693, 720
BmrFI	CCNGG	2 cut(s)	649, 807
BmrI	ACTGGG	1 cut(s)	23
BmsI	GCATC	2 cut(s)	104, 517
BmuI	ACTGGG	1 cut(s)	23
BpiI	GAAGAC	2 cut(s)	237, 775
BpmI	CTGGAG	2 cut(s)	380, 657
Bpu14I	TTCGAA	1 cut(s)	847
Bsa29I	ATCGAT	1 cut(s)	279
BsaAI	YACGTR	1 cut(s)	454
BsaBI	GATNNNNATC	1 cut(s)	892
BsaJI	CCNNGG	2 cut(s)	373, 647
BsaWI	WCCGGW	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	2 cut(s)	59, 81
Bse118I	RCCGGY	1 cut(s)	660
Bse1I	ACTGG	2 cut(s)	18, 75
Bse8I	GATNNNNATC	1 cut(s)	892
BseBI	CCWGG	2 cut(s)	649, 807
BseCI	ATCGAT	1 cut(s)	279
BseDI	CCNNGG	2 cut(s)	373, 647
BseGI	GGATG	4 cut(s)	119, 229, 572, 676
BseJI	GATNNNNATC	1 cut(s)	892
BseLI	CCNNNNNNNGG	2 cut(s)	59, 81
BseMII	CTCAG	2 cut(s)	476, 701
BseNI	ACTGG	2 cut(s)	18, 75
BseXI	GCAGC	2 cut(s)	104, 492
Bsh1236I	CGCG	2 cut(s)	147, 705
BshFI	GGCC	6 cut(s)	216, 322, 384, 436, 667, 810
BshVI	ATCGAT	1 cut(s)	279
BsiHKAI	GWGCWC	1 cut(s)	912
BsiSI	CCGG	4 cut(s)	35, 221, 661, 776
BslI	CCNNNNNNNGG	2 cut(s)	59, 81
BsmAI	GTCTC	4 cut(s)	255, 278, 525, 926
BsnI	GGCC	6 cut(s)	216, 322, 384, 436, 667, 810
Bsp119I	TTCGAA	1 cut(s)	847
Bsp1286I	GDGCHC	1 cut(s)	912
Bsp143I	GATC	3 cut(s)	361, 391, 887
Bsp19I	CCATGG	1 cut(s)	373
Bsp68I	TCGCGA	1 cut(s)	147
BspACI	CCGC	2 cut(s)	385, 664
BspANI	GGCC	6 cut(s)	216, 322, 384, 436, 667, 810
BspCNI	CTCAG	2 cut(s)	477, 700
BspDI	ATCGAT	1 cut(s)	279
BspFNI	CGCG	2 cut(s)	147, 705
BspLI	GGNNCC	2 cut(s)	693, 720
BspMAI	CTGCAG	1 cut(s)	589
BspT104I	TTCGAA	1 cut(s)	847
BsrFI	RCCGGY	1 cut(s)	660
BsrI	ACTGG	2 cut(s)	18, 75
BssAI	RCCGGY	1 cut(s)	660
BssECI	CCNNGG	2 cut(s)	373, 647
BssMI	GATC	3 cut(s)	361, 391, 887
BssT1I	CCWWGG	1 cut(s)	373
Bst2UI	CCWGG	2 cut(s)	649, 807
BstBAI	YACGTR	1 cut(s)	454
BstBI	TTCGAA	1 cut(s)	847
BstC8I	GCNNGC	2 cut(s)	122, 218
BstDEI	CTNAG	3 cut(s)	485, 527, 687
BstDSI	CCRYGG	1 cut(s)	373
BstENI	CCTNNNNNAGG	1 cut(s)	57
BstF5I	GGATG	4 cut(s)	119, 229, 572, 676
BstFNI	CGCG	2 cut(s)	147, 705
BstHHI	GCGC	2 cut(s)	141, 707
BstKTI	GATC	3 cut(s)	364, 394, 890
BstMAI	GTCTC	4 cut(s)	255, 278, 525, 926
BstMBI	GATC	3 cut(s)	361, 391, 887
BstMWI	GCNNNNNNNGC	4 cut(s)	114, 126, 217, 551
BstNI	CCWGG	2 cut(s)	649, 807
BstSCI	CCNGG	2 cut(s)	647, 805
BstSFI	CTRYAG	1 cut(s)	585
BstSNI	TACGTA	1 cut(s)	454
BstUI	CGCG	2 cut(s)	147, 705
BstV1I	GCAGC	2 cut(s)	104, 492
BstV2I	GAAGAC	2 cut(s)	237, 775
BstXI	CCANNNNNNTGG	2 cut(s)	314, 380
Bsu15I	ATCGAT	1 cut(s)	279
BsuI	GTATCC	1 cut(s)	574
BsuRI	GGCC	6 cut(s)	216, 322, 384, 436, 667, 810
BsuTUI	ATCGAT	1 cut(s)	279
BtgI	CCRYGG	1 cut(s)	373
BtsCI	GGATG	4 cut(s)	119, 229, 572, 676
BtuMI	TCGCGA	1 cut(s)	147
Cac8I	GCNNGC	2 cut(s)	122, 218
CfoI	GCGC	2 cut(s)	141, 707
Cfr10I	RCCGGY	1 cut(s)	660
Cfr13I	GGNCC	2 cut(s)	434, 718
ClaI	ATCGAT	1 cut(s)	279
Csp6I	GTAC	3 cut(s)	451, 614, 711
CviQI	GTAC	3 cut(s)	451, 614, 711
DdeI	CTNAG	3 cut(s)	485, 527, 687
DpnI	GATC	3 cut(s)	363, 393, 889
DpnII	GATC	3 cut(s)	361, 391, 887
DriI	GACNNNNNGTC	1 cut(s)	181
EaeI	YGGCCR	3 cut(s)	214, 320, 382
Eam1105I	GACNNNNNGTC	1 cut(s)	181
Eco105I	TACGTA	1 cut(s)	454
Eco130I	CCWWGG	1 cut(s)	373
Eco47I	GGWCC	1 cut(s)	718
EcoNI	CCTNNNNNAGG	1 cut(s)	57
EcoO109I	RGGNCCY	1 cut(s)	718
EcoRI	GAATTC	1 cut(s)	480
EcoRII	CCWGG	2 cut(s)	647, 805
EcoT14I	CCWWGG	1 cut(s)	373
ErhI	CCWWGG	1 cut(s)	373
FalI	AAGNNNNNCTT	2 cut(s)	250, 282
FbaI	TGATCA	1 cut(s)	361
Fnu4HI	GCNGC	4 cut(s)	118, 385, 506, 665
FokI	GGATG	4 cut(s)	126, 236, 579, 663
Fsp4HI	GCNGC	4 cut(s)	118, 385, 506, 665
FspBI	CTAG	3 cut(s)	708, 882, 929
GlaI	GCGC	2 cut(s)	140, 706
GluI	GCNGC	4 cut(s)	118, 385, 506, 665
GsuI	CTGGAG	2 cut(s)	380, 657
HaeIII	GGCC	6 cut(s)	216, 322, 384, 436, 667, 810
HapII	CCGG	4 cut(s)	35, 221, 661, 776
HhaI	GCGC	2 cut(s)	141, 707
Hin6I	GCGC	2 cut(s)	139, 705
HinP1I	GCGC	2 cut(s)	139, 705
HinfI	GANTC	7 cut(s)	182, 263, 400, 533, 685, 698, 815
HpaII	CCGG	4 cut(s)	35, 221, 661, 776
HphI	GGTGA	5 cut(s)	97, 472, 795, 810, 882
Hpy188I	TCNGA	5 cut(s)	45, 408, 486, 522, 681
Hpy188III	TCNNGA	7 cut(s)	146, 160, 359, 397, 608, 689, 882
HpyAV	CCTTC	5 cut(s)	293, 464, 751, 767, 854
HpyCH4IV	ACGT	2 cut(s)	453, 612
HpyCH4V	TGCA	5 cut(s)	124, 270, 508, 561, 587
HpyF10VI	GCNNNNNNNGC	4 cut(s)	114, 126, 217, 551
HpyF3I	CTNAG	3 cut(s)	485, 527, 687
HpySE526I	ACGT	2 cut(s)	453, 612
HspAI	GCGC	2 cut(s)	139, 705
Ksp22I	TGATCA	1 cut(s)	361
Kzo9I	GATC	3 cut(s)	361, 391, 887
LmnI	GCTCC	4 cut(s)	4, 55, 105, 907
Lsp1109I	GCAGC	2 cut(s)	104, 492
LweI	GCATC	2 cut(s)	104, 517
MaeI	CTAG	3 cut(s)	708, 882, 929
MaeII	ACGT	2 cut(s)	453, 612
MaeIII	GTNAC	1 cut(s)	70
MalI	GATC	3 cut(s)	363, 393, 889
MboI	GATC	3 cut(s)	361, 391, 887
MboII	GAAGA	9 cut(s)	175, 199, 242, 355, 358, 475, 502, 775, 897
MhlI	GDGCHC	1 cut(s)	912
MlsI	TGGCCA	2 cut(s)	216, 322
MluCI	AATT	7 cut(s)	327, 442, 480, 653, 798, 849, 855
MluNI	TGGCCA	2 cut(s)	216, 322
MlyI	GAGTC	6 cut(s)	191, 257, 527, 679, 692, 809
MnlI	CCTC	7 cut(s)	220, 240, 333, 480, 571, 678, 831
Mox20I	TGGCCA	2 cut(s)	216, 322
MscI	TGGCCA	2 cut(s)	216, 322
MseI	TTAA	1 cut(s)	330
MslI	CAYNNNNRTG	1 cut(s)	378
Msp20I	TGGCCA	2 cut(s)	216, 322
MspI	CCGG	4 cut(s)	35, 221, 661, 776
MspR9I	CCNGG	2 cut(s)	649, 807
MvaI	CCWGG	2 cut(s)	649, 807
MvnI	CGCG	2 cut(s)	147, 705
MwoI	GCNNNNNNNGC	4 cut(s)	114, 126, 217, 551
NcoI	CCATGG	1 cut(s)	373
NdeII	GATC	3 cut(s)	361, 391, 887
NlaIV	GGNNCC	2 cut(s)	693, 720
NruI	TCGCGA	1 cut(s)	147
NspV	TTCGAA	1 cut(s)	847
PfeI	GAWTC	1 cut(s)	400
PkrI	GCNGC	4 cut(s)	119, 386, 507, 666
PleI	GAGTC	6 cut(s)	190, 257, 527, 679, 692, 809
PpsI	GAGTC	6 cut(s)	190, 257, 527, 679, 692, 809
Ppu21I	YACGTR	1 cut(s)	454
PpuMI	RGGWCCY	1 cut(s)	718
Psp5II	RGGWCCY	1 cut(s)	718
Psp6I	CCWGG	2 cut(s)	647, 805
PspGI	CCWGG	2 cut(s)	647, 805
PspN4I	GGNNCC	2 cut(s)	693, 720
PspPI	GGNCC	2 cut(s)	434, 718
PspPPI	RGGWCCY	1 cut(s)	718
PstI	CTGCAG	1 cut(s)	589
RruI	TCGCGA	1 cut(s)	147
RsaI	GTAC	3 cut(s)	452, 615, 712
RsaNI	GTAC	3 cut(s)	451, 614, 711
RseI	CAYNNNNRTG	1 cut(s)	378
SaqAI	TTAA	1 cut(s)	330
SatI	GCNGC	4 cut(s)	118, 385, 506, 665
Sau3AI	GATC	3 cut(s)	361, 391, 887
Sau96I	GGNCC	2 cut(s)	434, 718
SchI	GAGTC	6 cut(s)	191, 257, 527, 679, 692, 809
ScrFI	CCNGG	2 cut(s)	649, 807
SduI	GDGCHC	1 cut(s)	912
SetI	ASST	8 cut(s)	9, 110, 456, 462, 507, 615, 823, 930
SfaNI	GCATC	2 cut(s)	104, 517
SfcI	CTRYAG	1 cut(s)	585
SfuI	TTCGAA	1 cut(s)	847
SgrAI	CRCCGGYG	1 cut(s)	660
SinI	GGWCC	1 cut(s)	718
SmiMI	CAYNNNNRTG	1 cut(s)	378
SnaBI	TACGTA	1 cut(s)	454
Sse9I	AATT	7 cut(s)	327, 442, 480, 653, 798, 849, 855
SsiI	CCGC	2 cut(s)	385, 664
SspMI	CTAG	3 cut(s)	708, 882, 929
StyD4I	CCNGG	2 cut(s)	647, 805
StyI	CCWWGG	1 cut(s)	373
TaiI	ACGT	2 cut(s)	456, 615
TaqI	TCGA	4 cut(s)	159, 185, 279, 847
TaqII	GACCGA	1 cut(s)	734
TasI	AATT	7 cut(s)	327, 442, 480, 653, 798, 849, 855
TauI	GCSGC	2 cut(s)	387, 667
TfiI	GAWTC	1 cut(s)	400
Tru1I	TTAA	1 cut(s)	330
Tru9I	TTAA	1 cut(s)	330
TseI	GCWGC	2 cut(s)	117, 505
TspDTI	ATGAA	1 cut(s)	29
TspGWI	ACGGA	1 cut(s)	660
VpaK11BI	GGWCC	1 cut(s)	718
XagI	CCTNNNNNAGG	1 cut(s)	57
XapI	RAATTY	3 cut(s)	442, 480, 855
XbaI	TCTAGA	1 cut(s)	881
XcmI	CCANNNNNNNNNTGG	1 cut(s)	333
XspI	CTAG	3 cut(s)	708, 882, 929

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.