Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0003240

Physical Location & Seq

Genomic Coordinates Forward (+)

10470647 .. 10471914

Gene Structure 1268 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g15080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGAGCTTCAACTTGGTCTCGCTCTTCCAAGCACTCCTCCTCCTCCTTCTCCGCCAATCAAGGGCTTCGACTTGAACAGCTTTGTTTACGAAGCTAGGGTTTGTAGTAGTATTAATGACAACTACAAGAAACGCAGCTTTGCGCAAGCTTTTGCTGATGGCAAGAACGACAAGACTAGTACTCCTAGTGCAACGGCCGTGCCTCGAACGCTGCCTTTGTTGCTTTGGAACAAGCAACCTAACAACGACGGTGACGAGGAGGACGACGACAACAACCCTCATAAACGCCAACACTGCAACTCCCGCTTTACCGTTGTCATCAAAAATGATGGAGATGGATTGGTGGGGTGGCCGCCCATTAAGTCATGGAGAAAGGAGATTTGCTTCCACCACCACCACCACAACAACCGCGGCGGTGGTAATGGAACGGTGAGAAATATTAACGGCTGTGGTGGCGGTGGCAGATCAGGTTCATCATCAAACTCAAACCAGTACTACAACAATTCTACATTCGTTAAGGTGAAAATGGAGGGAGTGGGAATAGCAAGAAAGATTGACTTGAGCCTCCACCAATCTTTCCAAACACTCACAGACACCTTGATGGACATGTTTGACAAATGTCAGATGGATTCGAAAAACTATAAGCTCACTTATCAAGACAGAGAAGGAGACTGGCTATTAGCTCAAGATGTTCCTTGGAGAAATTTCATCCGGTCGGTGCAGCGTCTGAACTTGCTTAAGAGAAGTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010114 GO:0010218 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

251

Amino Acids

28.18

Weight (kDa)

8.92

Isoelectric Point (pI)

48.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	41 - 208	5e-20	AUX/IAA family
AUX_IAA	PF02309	209 - 250	6.1e-13	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003240)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32280 AT4G32280 AT4G32280
fragaria_vesca	FvH4_1g02700 FvH4_2g28970
malus_domestica	MD02G1027600.v1.1 MD08G1151300.v1.1 MD15G1169100.v1.1
prunus_persica	Prupe.1G481700_v2.0.a1 Prupe.1G481700_v2.0.a1 Prupe.1G481700_v2.0.a1 Prupe.7G247500_v2.0.a1
pyrus_communis	pycom02g02260 pycom08g12740 pycom15g15080
rosa_chinensis	RchiOBHm_Chr2g0087791 RchiOBHm_Chr6g0297821
rosa_laevigata	RLG00000011558 RLG00000015900
rosa_multiflora	Rmu_co8358427.1_g000001 Rmu_sc0003137.1_g000004 Rmu_sc0008385.1_g000003
rosa_roxburghii	Rroxscaffold_2G00153220 Rroxscaffold_7G00170170 Rroxscaffold_7G00179020
rosa_rugosa	Rorug01G0478700 Rorug06G0275700
rosa_samantha	Rh2AG033100 Rh2BG032200 Rh2CG032900 Rh2DG032700 Rh6AG386400 Rh6BG395000 Rh6CG400700 Rh6DG387100
rosa_wichuraiana	Rw2G002580 Rw6G033680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	144
AccII	CGCG	1 cut(s)	411
AciI	CCGC	7 cut(s)	53, 304, 353, 409, 411, 414, 456
AcoI	YGGCCR	2 cut(s)	195, 350
AcsI	RAATTY	1 cut(s)	703
AfaI	GTAC	2 cut(s)	181, 494
AfiI	CCNNNNNNNGG	1 cut(s)	62
AflII	CTTAAG	1 cut(s)	737
AflIII	ACRYGT	1 cut(s)	606
AgsI	TTSAA	2 cut(s)	11, 76
AhlI	ACTAGT	1 cut(s)	176
AluBI	AGCT	7 cut(s)	7, 81, 95, 138, 149, 646, 683
AluI	AGCT	7 cut(s)	7, 81, 95, 138, 149, 646, 683
Alw26I	GTCTC	2 cut(s)	23, 663
AlwNI	CAGNNNCTG	1 cut(s)	727
AoxI	GGCC	2 cut(s)	195, 350
ApeKI	GCWGC	3 cut(s)	135, 211, 721
ApoI	RAATTY	1 cut(s)	703
AseI	ATTAAT	1 cut(s)	114
AspLEI	GCGC	1 cut(s)	145
AsuHPI	GGTGA	3 cut(s)	263, 442, 532
AsuII	TTCGAA	1 cut(s)	632
BbvI	GCAGC	3 cut(s)	147, 198, 733
BccI	CCATC	5 cut(s)	152, 323, 329, 595, 619
BceAI	ACGGC	3 cut(s)	182, 210, 460
BcoDI	GTCTC	2 cut(s)	23, 663
BcuI	ACTAGT	1 cut(s)	176
BfaI	CTAG	3 cut(s)	96, 177, 186
BfrI	CTTAAG	1 cut(s)	737
BisI	GCNGC	5 cut(s)	136, 212, 353, 412, 722
BlsI	GCNGC	5 cut(s)	137, 213, 354, 413, 723
BmcAI	AGTACT	2 cut(s)	181, 494
BoxI	GACNNNNGTC	1 cut(s)	618
Bpu14I	TTCGAA	1 cut(s)	632
BpuEI	CTTGAG	2 cut(s)	580, 669
BsaI	GGTCTC	1 cut(s)	23
BsaJI	CCNNGG	2 cut(s)	409, 695
BsaWI	WCCGGW	1 cut(s)	711
BsaXI	ACNNNNNCTCC	6 cut(s)	25, 55, 166, 196, 284, 314
Bsc4I	CCNNNNNNNGG	1 cut(s)	62
Bse1I	ACTGG	2 cut(s)	490, 677
BseDI	CCNNGG	2 cut(s)	409, 695
BseGI	GGATG	1 cut(s)	708
BseLI	CCNNNNNNNGG	1 cut(s)	62
BseNI	ACTGG	2 cut(s)	490, 677
BseRI	GAGGAG	4 cut(s)	27, 30, 33, 272
BseX3I	CGGCCG	1 cut(s)	195
BseXI	GCAGC	3 cut(s)	147, 198, 733
BsgI	GTGCAG	1 cut(s)	740
Bsh1236I	CGCG	1 cut(s)	411
Bsh1285I	CGRYCG	2 cut(s)	198, 716
BshFI	GGCC	2 cut(s)	197, 352
BsiEI	CGRYCG	2 cut(s)	198, 716
BsiSI	CCGG	1 cut(s)	712
BslI	CCNNNNNNNGG	1 cut(s)	62
BsmAI	GTCTC	2 cut(s)	23, 663
BsnI	GGCC	2 cut(s)	197, 352
Bso31I	GGTCTC	1 cut(s)	23
Bsp119I	TTCGAA	1 cut(s)	632
Bsp143I	GATC	1 cut(s)	464
BspACI	CCGC	7 cut(s)	53, 304, 353, 409, 411, 414, 456
BspANI	GGCC	2 cut(s)	197, 352
BspFNI	CGCG	1 cut(s)	411
BspQI	GCTCTTC	1 cut(s)	30
BspT104I	TTCGAA	1 cut(s)	632
BspTI	CTTAAG	1 cut(s)	737
BspTNI	GGTCTC	1 cut(s)	23
BsrI	ACTGG	2 cut(s)	490, 677
BssECI	CCNNGG	2 cut(s)	409, 695
BssMI	GATC	1 cut(s)	464
BssT1I	CCWWGG	1 cut(s)	695
Bst4CI	ACNGT	3 cut(s)	251, 313, 430
Bst6I	CTCTTC	1 cut(s)	30
BstAFI	CTTAAG	1 cut(s)	737
BstBI	TTCGAA	1 cut(s)	632
BstC8I	GCNNGC	1 cut(s)	147
BstDSI	CCRYGG	1 cut(s)	409
BstF5I	GGATG	1 cut(s)	708
BstFNI	CGCG	1 cut(s)	411
BstHHI	GCGC	1 cut(s)	145
BstKTI	GATC	1 cut(s)	467
BstMAI	GTCTC	2 cut(s)	23, 663
BstMBI	GATC	1 cut(s)	464
BstMCI	CGRYCG	2 cut(s)	198, 716
BstMWI	GCNNNNNNNGC	5 cut(s)	208, 220, 294, 303, 453
BstNSI	RCATGY	1 cut(s)	610
BstPAI	GACNNNNGTC	1 cut(s)	618
BstUI	CGCG	1 cut(s)	411
BstV1I	GCAGC	3 cut(s)	147, 198, 733
BstZI	CGGCCG	1 cut(s)	195
BsuRI	GGCC	2 cut(s)	197, 352
BtgI	CCRYGG	1 cut(s)	409
BtsCI	GGATG	1 cut(s)	708
BtsI	GCAGTG	1 cut(s)	292
BtsIMutI	CAGTG	1 cut(s)	292
Cac8I	GCNNGC	1 cut(s)	147
CaiI	CAGNNNCTG	1 cut(s)	727
CfoI	GCGC	1 cut(s)	145
Cfr42I	CCGCGG	1 cut(s)	412
CseI	GACGC	1 cut(s)	713
Csp6I	GTAC	2 cut(s)	180, 493
CviAII	CATG	2 cut(s)	366, 607
CviQI	GTAC	2 cut(s)	180, 493
DpnI	GATC	1 cut(s)	466
DpnII	GATC	1 cut(s)	464
EaeI	YGGCCR	2 cut(s)	195, 350
EagI	CGGCCG	1 cut(s)	195
Eam1104I	CTCTTC	1 cut(s)	30
EarI	CTCTTC	1 cut(s)	30
EciI	GGCGGA	1 cut(s)	42
EclXI	CGGCCG	1 cut(s)	195
Eco130I	CCWWGG	1 cut(s)	695
Eco31I	GGTCTC	1 cut(s)	23
Eco52I	CGGCCG	1 cut(s)	195
EcoT14I	CCWWGG	1 cut(s)	695
ErhI	CCWWGG	1 cut(s)	695
FaeI	CATG	2 cut(s)	369, 610
FaiI	YATR	4 cut(s)	282, 367, 608, 642
FalI	AAGNNNNNCTT	2 cut(s)	542, 574
FatI	CATG	2 cut(s)	365, 606
FauI	CCCGC	1 cut(s)	311
Fnu4HI	GCNGC	5 cut(s)	136, 212, 353, 412, 722
FokI	GGATG	1 cut(s)	695
Fsp4HI	GCNGC	5 cut(s)	136, 212, 353, 412, 722
FspBI	CTAG	3 cut(s)	96, 177, 186
FspI	TGCGCA	1 cut(s)	144
GlaI	GCGC	1 cut(s)	144
GluI	GCNGC	5 cut(s)	136, 212, 353, 412, 722
HaeIII	GGCC	2 cut(s)	197, 352
HapII	CCGG	1 cut(s)	712
HgaI	GACGC	1 cut(s)	713
HhaI	GCGC	1 cut(s)	145
Hin1II	CATG	2 cut(s)	369, 610
Hin6I	GCGC	1 cut(s)	143
HinP1I	GCGC	1 cut(s)	143
HindIII	AAGCTT	1 cut(s)	147
HinfI	GANTC	1 cut(s)	629
HpaII	CCGG	1 cut(s)	712
HphI	GGTGA	3 cut(s)	263, 442, 532
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188I	TCNGA	2 cut(s)	624, 729
Hpy188III	TCNNGA	2 cut(s)	656, 686
Hpy8I	GTNNAC	1 cut(s)	88
Hpy99I	CGWCG	2 cut(s)	251, 269
HpyAV	CCTTC	2 cut(s)	57, 659
HpyCH4III	ACNGT	3 cut(s)	251, 313, 430
HpyCH4V	TGCA	3 cut(s)	191, 297, 721
HpyF10VI	GCNNNNNNNGC	5 cut(s)	208, 220, 294, 303, 453
Hsp92II	CATG	2 cut(s)	369, 610
HspAI	GCGC	1 cut(s)	143
KspI	CCGCGG	1 cut(s)	412
Kzo9I	GATC	1 cut(s)	464
LguI	GCTCTTC	1 cut(s)	30
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	4 cut(s)	453, 503, 658, 725
Lsp1109I	GCAGC	3 cut(s)	147, 198, 733
MaeI	CTAG	3 cut(s)	96, 177, 186
MaeIII	GTNAC	1 cut(s)	251
MalI	GATC	1 cut(s)	466
MboI	GATC	1 cut(s)	464
MboII	GAAGA	1 cut(s)	17
MluCI	AATT	2 cut(s)	502, 703
MnlI	CCTC	9 cut(s)	48, 51, 54, 213, 250, 253, 288, 523, 575
MseI	TTAA	5 cut(s)	114, 360, 441, 516, 738
MslI	CAYNNNNRTG	1 cut(s)	599
MspA1I	CMGCKG	1 cut(s)	411
MspCI	CTTAAG	1 cut(s)	737
MspI	CCGG	1 cut(s)	712
MvnI	CGCG	1 cut(s)	411
MwoI	GCNNNNNNNGC	5 cut(s)	208, 220, 294, 303, 453
NdeII	GATC	1 cut(s)	464
NlaIII	CATG	2 cut(s)	369, 610
NmuCI	GTSAC	1 cut(s)	251
NsbI	TGCGCA	1 cut(s)	144
NspI	RCATGY	1 cut(s)	610
NspV	TTCGAA	1 cut(s)	632
PciI	ACATGT	1 cut(s)	606
PciSI	GCTCTTC	1 cut(s)	30
PcsI	WCGNNNNNNNCGW	2 cut(s)	252, 261
PfeI	GAWTC	1 cut(s)	629
PkrI	GCNGC	5 cut(s)	137, 213, 354, 413, 723
PscI	ACATGT	1 cut(s)	606
PshAI	GACNNNNGTC	1 cut(s)	618
PshBI	ATTAAT	1 cut(s)	114
PstNI	CAGNNNCTG	1 cut(s)	727
RsaI	GTAC	2 cut(s)	181, 494
RsaNI	GTAC	2 cut(s)	180, 493
RseI	CAYNNNNRTG	1 cut(s)	599
SacII	CCGCGG	1 cut(s)	412
SapI	GCTCTTC	1 cut(s)	30
SaqAI	TTAA	5 cut(s)	114, 360, 441, 516, 738
SatI	GCNGC	5 cut(s)	136, 212, 353, 412, 722
Sau3AI	GATC	1 cut(s)	464
ScaI	AGTACT	2 cut(s)	181, 494
Sfr303I	CCGCGG	1 cut(s)	412
SfuI	TTCGAA	1 cut(s)	632
SgrBI	CCGCGG	1 cut(s)	412
SmiMI	CAYNNNNRTG	1 cut(s)	599
SmlI	CTYRAG	3 cut(s)	559, 684, 737
SmoI	CTYRAG	3 cut(s)	559, 684, 737
SpeI	ACTAGT	1 cut(s)	176
Sse9I	AATT	2 cut(s)	502, 703
SsiI	CCGC	7 cut(s)	53, 304, 353, 409, 411, 414, 456
SspI	AATATT	1 cut(s)	439
SspMI	CTAG	3 cut(s)	96, 177, 186
StyI	CCWWGG	1 cut(s)	695
TaaI	ACNGT	3 cut(s)	251, 313, 430
TaqI	TCGA	3 cut(s)	69, 205, 632
TasI	AATT	2 cut(s)	502, 703
TatI	WGTACW	2 cut(s)	179, 492
TauI	GCSGC	2 cut(s)	355, 414
TfiI	GAWTC	1 cut(s)	629
Tru1I	TTAA	5 cut(s)	114, 360, 441, 516, 738
Tru9I	TTAA	5 cut(s)	114, 360, 441, 516, 738
TscAI	CASTG	1 cut(s)	299
TseFI	GTSAC	1 cut(s)	251
TseI	GCWGC	3 cut(s)	135, 211, 721
Tsp45I	GTSAC	1 cut(s)	251
TspDTI	ATGAA	2 cut(s)	462, 697
TspRI	CASTG	1 cut(s)	299
Vha464I	CTTAAG	1 cut(s)	737
VspI	ATTAAT	1 cut(s)	114
XapI	RAATTY	1 cut(s)	703
XceI	RCATGY	1 cut(s)	610
XspI	CTAG	3 cut(s)	96, 177, 186
ZrmI	AGTACT	2 cut(s)	181, 494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.