Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0003240

Physical Location & Seq

Genomic Coordinates Forward (+)

2109632 .. 2111147

Gene Structure 1516 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1027600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGAGCTTCAACTAGGTCTCGCTCTTTCAAGCACTCCTCCTGCTCCTCCGCCAATCAAGGGCTTCGACTTGAACAACTTTGTTGACGAAGCTAGGGTTTGTAGTAGTATTAACGACAAGTACAAGAAACGTAGCTTTGCCCAAGCTTTTGATGATGGCGAGCACGACAAGATTGGTTCTACTACTAGTGCAACAGCCGTGCCTCGAACGCTGCCTTTGTTGCTTTGGAACAGTGAACCGAACGAGGAGGACGACAACAACCCAAATAAACGCAAGCACACAAACTCCCGCTTTACCGTTGTTATCGAAAACGATGGAGATGGATTGGTGGGGTGGCCGCCCATTAAGTCATGGAGAAAGGAGATTTGCTTCCACCACCATCACAACAACCACTGTGGTGGTAATCTAACGACGGGAAATATCAACGGCTGTGGTGGTGGTGGCAGATCAGGGTCATCGTCAAACTCAAACCAATACTACTGCAACTCTAAATTCGTGAAGGTGAAGATGGAGGGAGTGGGAATAGCAAGAAAGATTGACTTGAGCCTCCACCAATCTTTCCAAACACTAACAGACAGCTTGATGGACATGTTTGACAAATGTCAGATGGATTCGAACAACTACAAACTCACTTACCAAGACAGAGACGGCGACTGGCTATTAGCTCAAGATGTTCCTTGGAGGAGCTTCATCCGGTCAGTGCAACGTCTCAAATTGGTTAAGAGAAACAATAAATTAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010114 GO:0010218 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

248

Amino Acids

27.79

Weight (kDa)

8.48

Isoelectric Point (pI)

45.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	38 - 203	1.4e-19	AUX/IAA family
AUX_IAA	PF02309	203 - 244	7.4e-13	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003240)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32280 AT4G32280 AT4G32280
fragaria_vesca	FvH4_1g02700 FvH4_2g28970
malus_domestica	MD02G1027600.v1.1 MD08G1151300.v1.1 MD15G1169100.v1.1
prunus_persica	Prupe.1G481700_v2.0.a1 Prupe.1G481700_v2.0.a1 Prupe.1G481700_v2.0.a1 Prupe.7G247500_v2.0.a1
pyrus_communis	pycom02g02260 pycom08g12740 pycom15g15080
rosa_chinensis	RchiOBHm_Chr2g0087791 RchiOBHm_Chr6g0297821
rosa_laevigata	RLG00000011558 RLG00000015900
rosa_multiflora	Rmu_co8358427.1_g000001 Rmu_sc0003137.1_g000004 Rmu_sc0008385.1_g000003
rosa_roxburghii	Rroxscaffold_2G00153220 Rroxscaffold_7G00170170 Rroxscaffold_7G00179020
rosa_rugosa	Rorug01G0478700 Rorug06G0275700
rosa_samantha	Rh2AG033100 Rh2BG032200 Rh2CG032900 Rh2DG032700 Rh6AG386400 Rh6BG395000 Rh6CG400700 Rh6DG387100
rosa_wichuraiana	Rw2G002580 Rw6G033680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	50, 289, 338
AcoI	YGGCCR	1 cut(s)	335
AcsI	RAATTY	1 cut(s)	491
AfaI	GTAC	1 cut(s)	122
AfiI	CCNNNNNNNGG	1 cut(s)	59
AflIII	ACRYGT	1 cut(s)	588
AgsI	TTSAA	3 cut(s)	11, 30, 73
AhlI	ACTAGT	1 cut(s)	185
AleI	CACNNNNGTG	1 cut(s)	396
AluBI	AGCT	7 cut(s)	7, 92, 135, 146, 579, 665, 687
AluI	AGCT	7 cut(s)	7, 92, 135, 146, 579, 665, 687
Alw21I	GWGCWC	1 cut(s)	165
Alw26I	GTCTC	3 cut(s)	23, 639, 713
AoxI	GGCC	1 cut(s)	335
ApeKI	GCWGC	1 cut(s)	211
ApoI	RAATTY	1 cut(s)	491
AseI	ATTAAT	1 cut(s)	737
AsuHPI	GGTGA	1 cut(s)	514
AsuII	TTCGAA	1 cut(s)	614
Bbv12I	GWGCWC	1 cut(s)	165
BbvI	GCAGC	1 cut(s)	198
BccI	CCATC	7 cut(s)	149, 308, 314, 387, 502, 577, 601
BceAI	ACGGC	3 cut(s)	182, 442, 664
BcoDI	GTCTC	3 cut(s)	23, 639, 713
BcuI	ACTAGT	1 cut(s)	185
BfaI	CTAG	3 cut(s)	14, 93, 186
BisI	GCNGC	2 cut(s)	212, 338
BlsI	GCNGC	2 cut(s)	213, 339
BoxI	GACNNNNGTC	1 cut(s)	600
Bpu14I	TTCGAA	1 cut(s)	614
BpuEI	CTTGAG	2 cut(s)	562, 651
BsaI	GGTCTC	1 cut(s)	23
BsaJI	CCNNGG	1 cut(s)	677
BsaWI	WCCGGW	1 cut(s)	693
BsaXI	ACNNNNNCTCC	2 cut(s)	269, 299
Bsc4I	CCNNNNNNNGG	1 cut(s)	59
Bse1I	ACTGG	1 cut(s)	659
BseDI	CCNNGG	1 cut(s)	677
BseGI	GGATG	1 cut(s)	690
BseLI	CCNNNNNNNGG	1 cut(s)	59
BseNI	ACTGG	1 cut(s)	659
BseRI	GAGGAG	4 cut(s)	27, 36, 260, 697
BseXI	GCAGC	1 cut(s)	198
BshFI	GGCC	1 cut(s)	337
BsiHKAI	GWGCWC	1 cut(s)	165
BsiSI	CCGG	1 cut(s)	694
BslI	CCNNNNNNNGG	1 cut(s)	59
BsmAI	GTCTC	3 cut(s)	23, 639, 713
BsmBI	CGTCTC	2 cut(s)	639, 713
BsnI	GGCC	1 cut(s)	337
Bso31I	GGTCTC	1 cut(s)	23
Bsp119I	TTCGAA	1 cut(s)	614
Bsp1286I	GDGCHC	1 cut(s)	165
Bsp143I	GATC	1 cut(s)	446
BspACI	CCGC	3 cut(s)	50, 289, 338
BspANI	GGCC	1 cut(s)	337
BspT104I	TTCGAA	1 cut(s)	614
BspTNI	GGTCTC	1 cut(s)	23
BsrI	ACTGG	1 cut(s)	659
BssECI	CCNNGG	1 cut(s)	677
BssMI	GATC	1 cut(s)	446
BssT1I	CCWWGG	1 cut(s)	677
Bst4CI	ACNGT	3 cut(s)	233, 298, 395
BstBI	TTCGAA	1 cut(s)	614
BstC8I	GCNNGC	2 cut(s)	161, 275
BstF5I	GGATG	1 cut(s)	690
BstKTI	GATC	1 cut(s)	449
BstMAI	GTCTC	3 cut(s)	23, 639, 713
BstMBI	GATC	1 cut(s)	446
BstMWI	GCNNNNNNNGC	2 cut(s)	208, 220
BstNSI	RCATGY	1 cut(s)	592
BstPAI	GACNNNNGTC	1 cut(s)	600
BstV1I	GCAGC	1 cut(s)	198
BstXI	CCANNNNNNTGG	1 cut(s)	398
BsuRI	GGCC	1 cut(s)	337
BtsCI	GGATG	1 cut(s)	690
BtsIMutI	CAGTG	3 cut(s)	238, 391, 705
Cac8I	GCNNGC	2 cut(s)	161, 275
Csp6I	GTAC	1 cut(s)	121
CspCI	CAANNNNNGTGG	4 cut(s)	376, 411, 412, 447
CviAII	CATG	2 cut(s)	351, 589
CviQI	GTAC	1 cut(s)	121
DpnI	GATC	1 cut(s)	448
DpnII	GATC	1 cut(s)	446
EaeI	YGGCCR	1 cut(s)	335
EciI	GGCGGA	1 cut(s)	39
Eco130I	CCWWGG	1 cut(s)	677
Eco31I	GGTCTC	1 cut(s)	23
EcoT14I	CCWWGG	1 cut(s)	677
ErhI	CCWWGG	1 cut(s)	677
Esp3I	CGTCTC	2 cut(s)	639, 713
FaeI	CATG	2 cut(s)	354, 592
FaiI	YATR	2 cut(s)	352, 590
FalI	AAGNNNNNCTT	2 cut(s)	524, 556
FatI	CATG	2 cut(s)	350, 588
FauI	CCCGC	1 cut(s)	296
Fnu4HI	GCNGC	2 cut(s)	212, 338
FokI	GGATG	1 cut(s)	677
Fsp4HI	GCNGC	2 cut(s)	212, 338
FspBI	CTAG	3 cut(s)	14, 93, 186
GluI	GCNGC	2 cut(s)	212, 338
HaeIII	GGCC	1 cut(s)	337
HapII	CCGG	1 cut(s)	694
Hin1II	CATG	2 cut(s)	354, 592
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HindIII	AAGCTT	1 cut(s)	144
HinfI	GANTC	1 cut(s)	611
HpaII	CCGG	1 cut(s)	694
HphI	GGTGA	1 cut(s)	514
Hpy166II	GTNNAC	2 cut(s)	85, 236
Hpy188I	TCNGA	1 cut(s)	606
Hpy188III	TCNNGA	2 cut(s)	496, 668
Hpy8I	GTNNAC	2 cut(s)	85, 236
Hpy99I	CGWCG	1 cut(s)	415
HpyAV	CCTTC	1 cut(s)	493
HpyCH4III	ACNGT	3 cut(s)	233, 298, 395
HpyCH4IV	ACGT	2 cut(s)	130, 706
HpyCH4V	TGCA	3 cut(s)	191, 483, 703
HpyF10VI	GCNNNNNNNGC	2 cut(s)	208, 220
HpySE526I	ACGT	2 cut(s)	130, 706
Hsp92II	CATG	2 cut(s)	354, 592
Kzo9I	GATC	1 cut(s)	446
LmnI	GCTCC	3 cut(s)	4, 49, 684
LpnPI	CCDG	4 cut(s)	54, 435, 640, 707
Lsp1109I	GCAGC	1 cut(s)	198
MaeI	CTAG	3 cut(s)	14, 93, 186
MaeII	ACGT	2 cut(s)	130, 706
MalI	GATC	1 cut(s)	448
MboI	GATC	1 cut(s)	446
MboII	GAAGA	1 cut(s)	517
MhlI	GDGCHC	1 cut(s)	165
MluCI	AATT	4 cut(s)	491, 713, 734, 738
MnlI	CCTC	8 cut(s)	48, 57, 213, 238, 241, 505, 557, 675
MseI	TTAA	4 cut(s)	111, 345, 720, 737
MslI	CAYNNNNRTG	1 cut(s)	396
MspI	CCGG	1 cut(s)	694
MwoI	GCNNNNNNNGC	2 cut(s)	208, 220
NdeII	GATC	1 cut(s)	446
NlaIII	CATG	2 cut(s)	354, 592
NspI	RCATGY	1 cut(s)	592
NspV	TTCGAA	1 cut(s)	614
OliI	CACNNNNGTG	1 cut(s)	396
PciI	ACATGT	1 cut(s)	588
PcsI	WCGNNNNNNNCGW	1 cut(s)	249
PfeI	GAWTC	1 cut(s)	611
PkrI	GCNGC	2 cut(s)	213, 339
PscI	ACATGT	1 cut(s)	588
PshAI	GACNNNNGTC	1 cut(s)	600
PshBI	ATTAAT	1 cut(s)	737
RsaI	GTAC	1 cut(s)	122
RsaNI	GTAC	1 cut(s)	121
RseI	CAYNNNNRTG	1 cut(s)	396
SaqAI	TTAA	4 cut(s)	111, 345, 720, 737
SatI	GCNGC	2 cut(s)	212, 338
Sau3AI	GATC	1 cut(s)	446
SduI	GDGCHC	1 cut(s)	165
SfuI	TTCGAA	1 cut(s)	614
SmiMI	CAYNNNNRTG	1 cut(s)	396
SmlI	CTYRAG	2 cut(s)	541, 666
SmoI	CTYRAG	2 cut(s)	541, 666
SpeI	ACTAGT	1 cut(s)	185
Sse9I	AATT	4 cut(s)	491, 713, 734, 738
SsiI	CCGC	3 cut(s)	50, 289, 338
SspMI	CTAG	3 cut(s)	14, 93, 186
StyI	CCWWGG	1 cut(s)	677
TaaI	ACNGT	3 cut(s)	233, 298, 395
TaiI	ACGT	2 cut(s)	133, 709
TaqI	TCGA	4 cut(s)	66, 205, 306, 614
TasI	AATT	4 cut(s)	491, 713, 734, 738
TatI	WGTACW	1 cut(s)	120
TauI	GCSGC	1 cut(s)	340
TfiI	GAWTC	1 cut(s)	611
Tru1I	TTAA	4 cut(s)	111, 345, 720, 737
Tru9I	TTAA	4 cut(s)	111, 345, 720, 737
TscAI	CASTG	3 cut(s)	238, 398, 705
TseI	GCWGC	1 cut(s)	211
TspDTI	ATGAA	1 cut(s)	679
TspRI	CASTG	3 cut(s)	238, 398, 705
VspI	ATTAAT	1 cut(s)	737
XapI	RAATTY	1 cut(s)	491
XceI	RCATGY	1 cut(s)	592
XspI	CTAG	3 cut(s)	14, 93, 186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.