Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G32280 AT4G32280 AT4G32280 |
| fragaria_vesca | FvH4_1g02700 FvH4_2g28970 |
| malus_domestica | MD02G1027600.v1.1 MD08G1151300.v1.1 MD15G1169100.v1.1 |
| prunus_persica | Prupe.1G481700_v2.0.a1 Prupe.1G481700_v2.0.a1 Prupe.1G481700_v2.0.a1 Prupe.7G247500_v2.0.a1 |
| pyrus_communis | pycom02g02260 pycom08g12740 pycom15g15080 |
| rosa_chinensis | RchiOBHm_Chr2g0087791 RchiOBHm_Chr6g0297821 |
| rosa_laevigata | RLG00000011558 RLG00000015900 |
| rosa_multiflora | Rmu_co8358427.1_g000001 Rmu_sc0003137.1_g000004 Rmu_sc0008385.1_g000003 |
| rosa_roxburghii | Rroxscaffold_2G00153220 Rroxscaffold_7G00170170 Rroxscaffold_7G00179020 |
| rosa_rugosa | Rorug01G0478700 Rorug06G0275700 |
| rosa_samantha | Rh2AG033100 Rh2BG032200 Rh2CG032900 Rh2DG032700 Rh6AG386400 Rh6BG395000 Rh6CG400700 Rh6DG387100 |
| rosa_wichuraiana | Rw2G002580 Rw6G033680 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 4 cut(s) | 50, 304, 353, 428 |
| AcoI | YGGCCR | 1 cut(s) | 350 |
| AcsI | RAATTY | 1 cut(s) | 478 |
| AfaI | GTAC | 1 cut(s) | 122 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 59, 730 |
| AflIII | ACRYGT | 1 cut(s) | 603 |
| AgsI | TTSAA | 4 cut(s) | 11, 30, 73, 483 |
| AhlI | ACTAGT | 1 cut(s) | 188 |
| AluBI | AGCT | 6 cut(s) | 7, 92, 135, 146, 680, 702 |
| AluI | AGCT | 6 cut(s) | 7, 92, 135, 146, 680, 702 |
| Alw21I | GWGCWC | 1 cut(s) | 168 |
| Alw26I | GTCTC | 1 cut(s) | 23 |
| AoxI | GGCC | 1 cut(s) | 350 |
| ApeKI | GCWGC | 2 cut(s) | 214, 249 |
| ApoI | RAATTY | 1 cut(s) | 478 |
| AspLEI | GCGC | 1 cut(s) | 288 |
| AsuHPI | GGTGA | 1 cut(s) | 529 |
| AsuII | TTCGAA | 1 cut(s) | 629 |
| Bbv12I | GWGCWC | 1 cut(s) | 168 |
| BbvI | GCAGC | 2 cut(s) | 201, 261 |
| BccI | CCATC | 6 cut(s) | 152, 323, 329, 517, 592, 616 |
| BceAI | ACGGC | 5 cut(s) | 185, 262, 390, 441, 457 |
| BcoDI | GTCTC | 1 cut(s) | 23 |
| BcuI | ACTAGT | 1 cut(s) | 188 |
| BfaI | CTAG | 3 cut(s) | 14, 93, 189 |
| BisI | GCNGC | 3 cut(s) | 215, 250, 353 |
| BlsI | GCNGC | 3 cut(s) | 216, 251, 354 |
| BoxI | GACNNNNGTC | 1 cut(s) | 615 |
| Bpu14I | TTCGAA | 1 cut(s) | 629 |
| BpuEI | CTTGAG | 2 cut(s) | 577, 666 |
| BsaI | GGTCTC | 1 cut(s) | 23 |
| BsaJI | CCNNGG | 1 cut(s) | 692 |
| BsaWI | WCCGGW | 1 cut(s) | 708 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 284, 314 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 59, 730 |
| Bse1I | ACTGG | 1 cut(s) | 674 |
| BseDI | CCNNGG | 1 cut(s) | 692 |
| BseGI | GGATG | 1 cut(s) | 705 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 59, 730 |
| BseNI | ACTGG | 1 cut(s) | 674 |
| BseRI | GAGGAG | 5 cut(s) | 27, 36, 272, 275, 712 |
| BseXI | GCAGC | 2 cut(s) | 201, 261 |
| BshFI | GGCC | 1 cut(s) | 352 |
| BsiHKAI | GWGCWC | 1 cut(s) | 168 |
| BsiSI | CCGG | 1 cut(s) | 709 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 59, 730 |
| BsmAI | GTCTC | 1 cut(s) | 23 |
| BsnI | GGCC | 1 cut(s) | 352 |
| Bso31I | GGTCTC | 1 cut(s) | 23 |
| Bsp119I | TTCGAA | 1 cut(s) | 629 |
| Bsp1286I | GDGCHC | 1 cut(s) | 168 |
| Bsp143I | GATC | 1 cut(s) | 461 |
| BspACI | CCGC | 4 cut(s) | 50, 304, 353, 428 |
| BspANI | GGCC | 1 cut(s) | 352 |
| BspT104I | TTCGAA | 1 cut(s) | 629 |
| BspTNI | GGTCTC | 1 cut(s) | 23 |
| BsrI | ACTGG | 1 cut(s) | 674 |
| BssECI | CCNNGG | 1 cut(s) | 692 |
| BssMI | GATC | 1 cut(s) | 461 |
| BssT1I | CCWWGG | 1 cut(s) | 692 |
| Bst4CI | ACNGT | 2 cut(s) | 236, 313 |
| BstBI | TTCGAA | 1 cut(s) | 629 |
| BstC8I | GCNNGC | 2 cut(s) | 164, 290 |
| BstF5I | GGATG | 1 cut(s) | 705 |
| BstHHI | GCGC | 1 cut(s) | 288 |
| BstKTI | GATC | 1 cut(s) | 464 |
| BstMAI | GTCTC | 1 cut(s) | 23 |
| BstMBI | GATC | 1 cut(s) | 461 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 211, 283 |
| BstNSI | RCATGY | 1 cut(s) | 607 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 615 |
| BstV1I | GCAGC | 2 cut(s) | 201, 261 |
| BsuRI | GGCC | 1 cut(s) | 352 |
| BtsCI | GGATG | 1 cut(s) | 705 |
| BtsIMutI | CAGTG | 2 cut(s) | 241, 720 |
| Cac8I | GCNNGC | 2 cut(s) | 164, 290 |
| CfoI | GCGC | 1 cut(s) | 288 |
| Csp6I | GTAC | 1 cut(s) | 121 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 427, 462 |
| CviAII | CATG | 2 cut(s) | 366, 604 |
| CviQI | GTAC | 1 cut(s) | 121 |
| DpnI | GATC | 1 cut(s) | 463 |
| DpnII | GATC | 1 cut(s) | 461 |
| EaeI | YGGCCR | 1 cut(s) | 350 |
| EciI | GGCGGA | 1 cut(s) | 39 |
| Eco130I | CCWWGG | 1 cut(s) | 692 |
| Eco31I | GGTCTC | 1 cut(s) | 23 |
| EcoT14I | CCWWGG | 1 cut(s) | 692 |
| ErhI | CCWWGG | 1 cut(s) | 692 |
| FaeI | CATG | 2 cut(s) | 369, 607 |
| FaiI | YATR | 2 cut(s) | 367, 605 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 539, 571 |
| FatI | CATG | 2 cut(s) | 365, 603 |
| FauI | CCCGC | 2 cut(s) | 311, 421 |
| Fnu4HI | GCNGC | 3 cut(s) | 215, 250, 353 |
| FokI | GGATG | 1 cut(s) | 692 |
| Fsp4HI | GCNGC | 3 cut(s) | 215, 250, 353 |
| FspBI | CTAG | 3 cut(s) | 14, 93, 189 |
| GlaI | GCGC | 1 cut(s) | 287 |
| GluI | GCNGC | 3 cut(s) | 215, 250, 353 |
| HaeIII | GGCC | 1 cut(s) | 352 |
| HapII | CCGG | 1 cut(s) | 709 |
| HhaI | GCGC | 1 cut(s) | 288 |
| Hin1II | CATG | 2 cut(s) | 369, 607 |
| Hin6I | GCGC | 1 cut(s) | 286 |
| HinP1I | GCGC | 1 cut(s) | 286 |
| HindIII | AAGCTT | 1 cut(s) | 144 |
| HinfI | GANTC | 1 cut(s) | 626 |
| HpaII | CCGG | 1 cut(s) | 709 |
| HphI | GGTGA | 1 cut(s) | 529 |
| Hpy166II | GTNNAC | 1 cut(s) | 239 |
| Hpy188I | TCNGA | 1 cut(s) | 621 |
| Hpy188III | TCNNGA | 2 cut(s) | 511, 683 |
| Hpy8I | GTNNAC | 1 cut(s) | 239 |
| Hpy99I | CGWCG | 1 cut(s) | 257 |
| HpyAV | CCTTC | 1 cut(s) | 508 |
| HpyCH4III | ACNGT | 2 cut(s) | 236, 313 |
| HpyCH4IV | ACGT | 1 cut(s) | 130 |
| HpyCH4V | TGCA | 2 cut(s) | 194, 718 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 211, 283 |
| HpySE526I | ACGT | 1 cut(s) | 130 |
| Hsp92II | CATG | 2 cut(s) | 369, 607 |
| HspAI | GCGC | 1 cut(s) | 286 |
| Kzo9I | GATC | 1 cut(s) | 461 |
| LmnI | GCTCC | 3 cut(s) | 4, 49, 699 |
| LpnPI | CCDG | 4 cut(s) | 54, 450, 655, 722 |
| Lsp1109I | GCAGC | 2 cut(s) | 201, 261 |
| MaeI | CTAG | 3 cut(s) | 14, 93, 189 |
| MaeII | ACGT | 1 cut(s) | 130 |
| MalI | GATC | 1 cut(s) | 463 |
| MboI | GATC | 1 cut(s) | 461 |
| MboII | GAAGA | 1 cut(s) | 532 |
| MhlI | GDGCHC | 1 cut(s) | 168 |
| MluCI | AATT | 2 cut(s) | 478, 728 |
| MseI | TTAA | 4 cut(s) | 111, 360, 735, 748 |
| MslI | CAYNNNNRTG | 1 cut(s) | 596 |
| MspI | CCGG | 1 cut(s) | 709 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 211, 283 |
| NdeII | GATC | 1 cut(s) | 461 |
| NlaIII | CATG | 2 cut(s) | 369, 607 |
| NspI | RCATGY | 1 cut(s) | 607 |
| NspV | TTCGAA | 1 cut(s) | 629 |
| PciI | ACATGT | 1 cut(s) | 603 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 252 |
| PfeI | GAWTC | 1 cut(s) | 626 |
| PkrI | GCNGC | 3 cut(s) | 216, 251, 354 |
| PscI | ACATGT | 1 cut(s) | 603 |
| PshAI | GACNNNNGTC | 1 cut(s) | 615 |
| RsaI | GTAC | 1 cut(s) | 122 |
| RsaNI | GTAC | 1 cut(s) | 121 |
| RseI | CAYNNNNRTG | 1 cut(s) | 596 |
| SaqAI | TTAA | 4 cut(s) | 111, 360, 735, 748 |
| SatI | GCNGC | 3 cut(s) | 215, 250, 353 |
| Sau3AI | GATC | 1 cut(s) | 461 |
| SduI | GDGCHC | 1 cut(s) | 168 |
| SfuI | TTCGAA | 1 cut(s) | 629 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 596 |
| SmlI | CTYRAG | 2 cut(s) | 556, 681 |
| SmoI | CTYRAG | 2 cut(s) | 556, 681 |
| SpeI | ACTAGT | 1 cut(s) | 188 |
| Sse9I | AATT | 2 cut(s) | 478, 728 |
| SsiI | CCGC | 4 cut(s) | 50, 304, 353, 428 |
| SspMI | CTAG | 3 cut(s) | 14, 93, 189 |
| StyI | CCWWGG | 1 cut(s) | 692 |
| TaaI | ACNGT | 2 cut(s) | 236, 313 |
| TaiI | ACGT | 1 cut(s) | 133 |
| TaqI | TCGA | 5 cut(s) | 66, 208, 321, 421, 629 |
| TasI | AATT | 2 cut(s) | 478, 728 |
| TatI | WGTACW | 1 cut(s) | 120 |
| TauI | GCSGC | 1 cut(s) | 355 |
| TfiI | GAWTC | 1 cut(s) | 626 |
| Tru1I | TTAA | 4 cut(s) | 111, 360, 735, 748 |
| Tru9I | TTAA | 4 cut(s) | 111, 360, 735, 748 |
| TscAI | CASTG | 2 cut(s) | 241, 720 |
| TseI | GCWGC | 2 cut(s) | 214, 249 |
| TspDTI | ATGAA | 1 cut(s) | 694 |
| TspRI | CASTG | 2 cut(s) | 241, 720 |
| XapI | RAATTY | 1 cut(s) | 478 |
| XceI | RCATGY | 1 cut(s) | 607 |
| XspI | CTAG | 3 cut(s) | 14, 93, 189 |