Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003240

Physical Location & Seq

Genomic Coordinates Reverse (-)

10612040 .. 10613872

Gene Structure 1833 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00170170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGAGCTTCAACTGGGTTTGGCTCTGTCGCTTCCGGTTCATCAGAACGCTCCTGTCAAAGGGTTTGATGTAACCAGTCATGGGGTGATGGGTTTGGATTTATGGAGCTATGGATGCTGCTTGGAGAGCAAAAAGAAGCGCAGTCTCGACACGGCTTTCGAGAAGATTGGAAGTGACGATGAGTTGAAGATGTTGCCTTTGTTGTTGTGGCATGGCCAGCCGGATGAGGAAGACGATGATGGCAAGAGGCAGAAGAAAAGAGACTCTTGCAGTCTCATCGATACCAATGATGATGGAGAAGGAAACCAAGTTGTTGGGTGGCCACCAATTAAATCATGGAGGAAGAAGATGTTTTTCCTGATCATCAACACCATGGTCATGGCCACCACGATCTCCAGAATCATCAGAATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AUX_IAA LRR_1 LRR_4 LRR_8 Malectin

Protein Analysis

137

Amino Acids

15.49

Weight (kDa)

5.9

Isoelectric Point (pI)

44.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	29 - 118	9.9e-07	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003240)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32280 AT4G32280 AT4G32280
fragaria_vesca	FvH4_1g02700 FvH4_2g28970
malus_domestica	MD02G1027600.v1.1 MD08G1151300.v1.1 MD15G1169100.v1.1
prunus_persica	Prupe.1G481700_v2.0.a1 Prupe.1G481700_v2.0.a1 Prupe.1G481700_v2.0.a1 Prupe.7G247500_v2.0.a1
pyrus_communis	pycom02g02260 pycom08g12740 pycom15g15080
rosa_chinensis	RchiOBHm_Chr2g0087791 RchiOBHm_Chr6g0297821
rosa_laevigata	RLG00000011558 RLG00000015900
rosa_multiflora	Rmu_co8358427.1_g000001 Rmu_sc0003137.1_g000004 Rmu_sc0008385.1_g000003
rosa_roxburghii	Rroxscaffold_2G00153220 Rroxscaffold_7G00170170 Rroxscaffold_7G00179020
rosa_rugosa	Rorug01G0478700 Rorug06G0275700
rosa_samantha	Rh2AG033100 Rh2BG032200 Rh2CG032900 Rh2DG032700 Rh6AG386400 Rh6BG395000 Rh6CG400700 Rh6DG387100
rosa_wichuraiana	Rw2G002580 Rw6G033680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	3 cut(s)	214, 320, 381
AfiI	CCNNNNNNNGG	2 cut(s)	59, 81
AgsI	TTSAA	2 cut(s)	11, 187
AluBI	AGCT	2 cut(s)	7, 108
AluI	AGCT	2 cut(s)	7, 108
Alw26I	GTCTC	3 cut(s)	149, 255, 278
AoxI	GGCC	3 cut(s)	214, 320, 381
ApeKI	GCWGC	1 cut(s)	117
ArsI	GACNNNNNNTTYG	2 cut(s)	140, 172
AspLEI	GCGC	1 cut(s)	141
AsuHPI	GGTGA	1 cut(s)	97
BalI	TGGCCA	3 cut(s)	216, 322, 383
BbsI	GAAGAC	1 cut(s)	237
BbvI	GCAGC	1 cut(s)	104
BccI	CCATC	3 cut(s)	82, 233, 287
BceAI	ACGGC	1 cut(s)	168
BcgI	CGANNNNNNTGC	2 cut(s)	259, 293
BclI	TGATCA	1 cut(s)	360
BcoDI	GTCTC	3 cut(s)	149, 255, 278
BisI	GCNGC	1 cut(s)	118
BlsI	GCNGC	1 cut(s)	119
BmrI	ACTGGG	1 cut(s)	23
BmsI	GCATC	1 cut(s)	104
BmuI	ACTGGG	1 cut(s)	23
BpiI	GAAGAC	1 cut(s)	237
BpmI	CTGGAG	1 cut(s)	379
Bsa29I	ATCGAT	1 cut(s)	279
BsaJI	CCNNGG	1 cut(s)	372
BsaWI	WCCGGW	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	2 cut(s)	59, 81
Bse1I	ACTGG	2 cut(s)	18, 75
BseCI	ATCGAT	1 cut(s)	279
BseDI	CCNNGG	1 cut(s)	372
BseGI	GGATG	2 cut(s)	119, 229
BseLI	CCNNNNNNNGG	2 cut(s)	59, 81
BseNI	ACTGG	2 cut(s)	18, 75
BseXI	GCAGC	1 cut(s)	104
BshFI	GGCC	3 cut(s)	216, 322, 383
BshVI	ATCGAT	1 cut(s)	279
BsiSI	CCGG	2 cut(s)	35, 221
BslI	CCNNNNNNNGG	2 cut(s)	59, 81
BsmAI	GTCTC	3 cut(s)	149, 255, 278
BsnI	GGCC	3 cut(s)	216, 322, 383
Bsp143I	GATC	2 cut(s)	360, 390
Bsp19I	CCATGG	1 cut(s)	372
BspANI	GGCC	3 cut(s)	216, 322, 383
BspDI	ATCGAT	1 cut(s)	279
BsrI	ACTGG	2 cut(s)	18, 75
BssECI	CCNNGG	1 cut(s)	372
BssMI	GATC	2 cut(s)	360, 390
BssT1I	CCWWGG	1 cut(s)	372
BstC8I	GCNNGC	1 cut(s)	218
BstDSI	CCRYGG	1 cut(s)	372
BstENI	CCTNNNNNAGG	1 cut(s)	57
BstF5I	GGATG	2 cut(s)	119, 229
BstHHI	GCGC	1 cut(s)	141
BstKTI	GATC	2 cut(s)	363, 393
BstMAI	GTCTC	3 cut(s)	149, 255, 278
BstMBI	GATC	2 cut(s)	360, 390
BstMWI	GCNNNNNNNGC	3 cut(s)	114, 126, 217
BstV1I	GCAGC	1 cut(s)	104
BstV2I	GAAGAC	1 cut(s)	237
BstXI	CCANNNNNNTGG	2 cut(s)	314, 379
Bsu15I	ATCGAT	1 cut(s)	279
BsuRI	GGCC	3 cut(s)	216, 322, 383
BsuTUI	ATCGAT	1 cut(s)	279
BtgI	CCRYGG	1 cut(s)	372
BtsCI	GGATG	2 cut(s)	119, 229
Cac8I	GCNNGC	1 cut(s)	218
CfoI	GCGC	1 cut(s)	141
ClaI	ATCGAT	1 cut(s)	279
CviAII	CATG	5 cut(s)	80, 212, 336, 373, 379
CviJI	RGCY	8 cut(s)	7, 23, 108, 155, 216, 220, 322, 383
CviKI_1	RGCY	8 cut(s)	7, 23, 108, 155, 216, 220, 322, 383
DpnI	GATC	2 cut(s)	362, 392
DpnII	GATC	2 cut(s)	360, 390
EaeI	YGGCCR	3 cut(s)	214, 320, 381
Eco130I	CCWWGG	1 cut(s)	372
EcoNI	CCTNNNNNAGG	1 cut(s)	57
EcoT14I	CCWWGG	1 cut(s)	372
ErhI	CCWWGG	1 cut(s)	372
FaeI	CATG	5 cut(s)	83, 215, 339, 376, 382
FaiI	YATR	8 cut(s)	81, 103, 111, 213, 337, 374, 380, 412
FalI	AAGNNNNNCTT	2 cut(s)	250, 282
FatI	CATG	5 cut(s)	79, 211, 335, 372, 378
FbaI	TGATCA	1 cut(s)	360
Fnu4HI	GCNGC	1 cut(s)	118
FokI	GGATG	2 cut(s)	126, 236
Fsp4HI	GCNGC	1 cut(s)	118
GlaI	GCGC	1 cut(s)	140
GluI	GCNGC	1 cut(s)	118
GsuI	CTGGAG	1 cut(s)	379
HaeIII	GGCC	3 cut(s)	216, 322, 383
HapII	CCGG	2 cut(s)	35, 221
HhaI	GCGC	1 cut(s)	141
Hin1II	CATG	5 cut(s)	83, 215, 339, 376, 382
Hin6I	GCGC	1 cut(s)	139
HinP1I	GCGC	1 cut(s)	139
HinfI	GANTC	2 cut(s)	263, 399
HpaII	CCGG	2 cut(s)	35, 221
HphI	GGTGA	1 cut(s)	97
Hpy188I	TCNGA	2 cut(s)	45, 407
Hpy188III	TCNNGA	4 cut(s)	146, 160, 358, 396
HpyAV	CCTTC	1 cut(s)	293
HpyCH4V	TGCA	1 cut(s)	270
HpyF10VI	GCNNNNNNNGC	3 cut(s)	114, 126, 217
Hsp92II	CATG	5 cut(s)	83, 215, 339, 376, 382
HspAI	GCGC	1 cut(s)	139
Ksp22I	TGATCA	1 cut(s)	360
Kzo9I	GATC	2 cut(s)	360, 390
LmnI	GCTCC	3 cut(s)	4, 55, 105
LpnPI	CCDG	7 cut(s)	48, 66, 88, 230, 234, 371, 409
Lsp1109I	GCAGC	1 cut(s)	104
LweI	GCATC	1 cut(s)	104
MaeIII	GTNAC	2 cut(s)	70, 173
MalI	GATC	2 cut(s)	362, 392
MboI	GATC	2 cut(s)	360, 390
MboII	GAAGA	6 cut(s)	175, 199, 242, 265, 355, 358
MlsI	TGGCCA	3 cut(s)	216, 322, 383
MluCI	AATT	1 cut(s)	327
MluNI	TGGCCA	3 cut(s)	216, 322, 383
MlyI	GAGTC	1 cut(s)	257
MnlI	CCTC	3 cut(s)	220, 240, 333
Mox20I	TGGCCA	3 cut(s)	216, 322, 383
MscI	TGGCCA	3 cut(s)	216, 322, 383
MseI	TTAA	1 cut(s)	330
MslI	CAYNNNNRTG	1 cut(s)	377
Msp20I	TGGCCA	3 cut(s)	216, 322, 383
MspI	CCGG	2 cut(s)	35, 221
MwoI	GCNNNNNNNGC	3 cut(s)	114, 126, 217
NcoI	CCATGG	1 cut(s)	372
NdeII	GATC	2 cut(s)	360, 390
NlaIII	CATG	5 cut(s)	83, 215, 339, 376, 382
NmuCI	GTSAC	1 cut(s)	173
PfeI	GAWTC	1 cut(s)	399
PkrI	GCNGC	1 cut(s)	119
PleI	GAGTC	1 cut(s)	257
PpsI	GAGTC	1 cut(s)	257
RseI	CAYNNNNRTG	1 cut(s)	377
SaqAI	TTAA	1 cut(s)	330
SatI	GCNGC	1 cut(s)	118
Sau3AI	GATC	2 cut(s)	360, 390
SchI	GAGTC	1 cut(s)	257
SetI	ASST	2 cut(s)	9, 110
SfaNI	GCATC	1 cut(s)	104
SmiMI	CAYNNNNRTG	1 cut(s)	377
Sse9I	AATT	1 cut(s)	327
StyI	CCWWGG	1 cut(s)	372
TaqI	TCGA	3 cut(s)	147, 159, 279
TasI	AATT	1 cut(s)	327
TfiI	GAWTC	1 cut(s)	399
Tru1I	TTAA	1 cut(s)	330
Tru9I	TTAA	1 cut(s)	330
TseFI	GTSAC	1 cut(s)	173
TseI	GCWGC	1 cut(s)	117
Tsp45I	GTSAC	1 cut(s)	173
TspDTI	ATGAA	1 cut(s)	29
XagI	CCTNNNNNAGG	1 cut(s)	57
XcmI	CCANNNNNNNNNTGG	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.