Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0003240

Physical Location & Seq

Genomic Coordinates Forward (+)

2254126 .. 2255426

Gene Structure 1301 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G002580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGAGCTTCAGCTGGGTCTCGCTCTTCCAACCAATAACAATTGTCCCGTCAAAGGCGGCCTCGACTTGAACATTAACGACTTTCTCTGCCACCCTACTATTAGTGACGGCAGCAGCAACAAGAACAAGAAGCGTAGTTTCACCCAAGCTTTTGAGCCCAGCAATGCCTCAGCAGCCGTGCCTCGAACGCTGCCTTGGTTGATTTGGAACAACCAACCAAACGACGACGAAGATGACACCAAACACAGTTCTCGTTACACCATTATGATCAAAAATGAGGAAGATGGACTAGTGGGTTGGCCGCCCATTAAGTCATGGAAGAAGGAGACTTGCTTTCACATCCACGGCGACGGTGGTGGCCGTCGTCATCGGACAGTGGGGATTAATGGCGGAAACTCTACATTTGTGAAGGTGAAAATGGAGGGAGTTGGAATAGCAAGAAAGATTGACTTGAGCCAACATCAAAATTTCCAAACACTCCTAAGAACCTTGATGCACATGTTTGACAAATGTGAGATAGATTCAGACAATTATAAACTCACTTATCAAGACAGGGAAGGAGACTGGCTTCTTGCTCATGATCAAGATGTACCTTGGAGAACTTTCGTGCGGTCTGTGCAACGACTCAAATTGCTTAAAAGGGGAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0016020 GO:0031090 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

ko00510 ko01100 ko04075 map00510 map01100 map04075

Pfam Domains

Protein Families

Glyco_transf_17

Protein Analysis

216

Amino Acids

24.64

Weight (kDa)

8.65

Isoelectric Point (pI)

46.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	2 - 173	4.5e-18	AUX/IAA family
AUX_IAA	PF02309	174 - 214	6.5e-11	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003240)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32280 AT4G32280 AT4G32280
fragaria_vesca	FvH4_1g02700 FvH4_2g28970
malus_domestica	MD02G1027600.v1.1 MD08G1151300.v1.1 MD15G1169100.v1.1
prunus_persica	Prupe.1G481700_v2.0.a1 Prupe.1G481700_v2.0.a1 Prupe.1G481700_v2.0.a1 Prupe.7G247500_v2.0.a1
pyrus_communis	pycom02g02260 pycom08g12740 pycom15g15080
rosa_chinensis	RchiOBHm_Chr2g0087791 RchiOBHm_Chr6g0297821
rosa_laevigata	RLG00000011558 RLG00000015900
rosa_multiflora	Rmu_co8358427.1_g000001 Rmu_sc0003137.1_g000004 Rmu_sc0008385.1_g000003
rosa_roxburghii	Rroxscaffold_2G00153220 Rroxscaffold_7G00170170 Rroxscaffold_7G00179020
rosa_rugosa	Rorug01G0478700 Rorug06G0275700
rosa_samantha	Rh2AG033100 Rh2BG032200 Rh2CG032900 Rh2DG032700 Rh6AG386400 Rh6BG395000 Rh6CG400700 Rh6DG387100
rosa_wichuraiana	Rw2G002580 Rw6G033680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	534
AciI	CCGC	4 cut(s)	57, 302, 390, 610
AcoI	YGGCCR	2 cut(s)	299, 358
AcsI	RAATTY	1 cut(s)	466
AfaI	GTAC	1 cut(s)	591
AfiI	CCNNNNNNNGG	1 cut(s)	53
AflIII	ACRYGT	1 cut(s)	498
AgsI	TTSAA	1 cut(s)	70
AhlI	ACTAGT	1 cut(s)	289
AjuI	GAANNNNNNNTTGG	2 cut(s)	178, 210
AluBI	AGCT	3 cut(s)	7, 13, 149
AluI	AGCT	3 cut(s)	7, 13, 149
Alw26I	GTCTC	3 cut(s)	23, 320, 555
AoxI	GGCC	3 cut(s)	58, 299, 358
ApeKI	GCWGC	4 cut(s)	111, 114, 173, 190
ApoI	RAATTY	1 cut(s)	466
AseI	ATTAAT	1 cut(s)	384
AsuHPI	GGTGA	2 cut(s)	133, 424
BanII	GRGCYC	1 cut(s)	159
BbvCI	CCTCAGC	1 cut(s)	169
BbvI	GCAGC	4 cut(s)	123, 126, 177, 185
BccI	CCATC	1 cut(s)	278
BceAI	ACGGC	4 cut(s)	124, 161, 345, 361
BclI	TGATCA	2 cut(s)	267, 580
BcoDI	GTCTC	3 cut(s)	23, 320, 555
BcuI	ACTAGT	1 cut(s)	289
BfaI	CTAG	2 cut(s)	290, 649
BisI	GCNGC	6 cut(s)	58, 112, 115, 174, 191, 302
BlsI	GCNGC	6 cut(s)	59, 113, 116, 175, 192, 303
BmsI	GCATC	1 cut(s)	483
Bpu10I	CCTNAGC	1 cut(s)	169
BpuEI	CTTGAG	1 cut(s)	472
BsaI	GGTCTC	1 cut(s)	23
BsaJI	CCNNGG	3 cut(s)	194, 343, 593
Bsc4I	CCNNNNNNNGG	1 cut(s)	53
Bse1I	ACTGG	1 cut(s)	569
Bse3DI	GCAATG	1 cut(s)	169
BseDI	CCNNGG	3 cut(s)	194, 343, 593
BseGI	GGATG	1 cut(s)	339
BseLI	CCNNNNNNNGG	1 cut(s)	53
BseMI	GCAATG	1 cut(s)	169
BseMII	CTCAG	1 cut(s)	183
BseNI	ACTGG	1 cut(s)	569
BseXI	GCAGC	4 cut(s)	123, 126, 177, 185
BseYI	CCCAGC	2 cut(s)	13, 158
BshFI	GGCC	3 cut(s)	60, 301, 360
BslFI	GGGAC	1 cut(s)	30
BslI	CCNNNNNNNGG	1 cut(s)	53
BsmAI	GTCTC	3 cut(s)	23, 320, 555
BsmFI	GGGAC	1 cut(s)	30
BsnI	GGCC	3 cut(s)	60, 301, 360
Bso31I	GGTCTC	1 cut(s)	23
Bsp1286I	GDGCHC	1 cut(s)	159
Bsp143I	GATC	2 cut(s)	267, 580
BspACI	CCGC	4 cut(s)	57, 302, 390, 610
BspANI	GGCC	3 cut(s)	60, 301, 360
BspCNI	CTCAG	1 cut(s)	182
BspHI	TCATGA	1 cut(s)	577
BspQI	GCTCTTC	1 cut(s)	30
BspTNI	GGTCTC	1 cut(s)	23
BsrDI	GCAATG	1 cut(s)	169
BsrI	ACTGG	1 cut(s)	569
BssECI	CCNNGG	3 cut(s)	194, 343, 593
BssMI	GATC	2 cut(s)	267, 580
BssT1I	CCWWGG	2 cut(s)	194, 593
Bst4CI	ACNGT	3 cut(s)	248, 353, 376
Bst6I	CTCTTC	1 cut(s)	30
BstDEI	CTNAG	2 cut(s)	169, 482
BstDSI	CCRYGG	1 cut(s)	343
BstF5I	GGATG	1 cut(s)	339
BstKTI	GATC	2 cut(s)	270, 583
BstMAI	GTCTC	3 cut(s)	23, 320, 555
BstMBI	GATC	2 cut(s)	267, 580
BstMWI	GCNNNNNNNGC	3 cut(s)	173, 187, 616
BstNSI	RCATGY	1 cut(s)	502
BstV1I	GCAGC	4 cut(s)	123, 126, 177, 185
BsuRI	GGCC	3 cut(s)	60, 301, 360
BtgI	CCRYGG	1 cut(s)	343
BtsCI	GGATG	1 cut(s)	339
BtsIMutI	CAGTG	1 cut(s)	381
CciI	TCATGA	1 cut(s)	577
Csp6I	GTAC	1 cut(s)	590
CviAII	CATG	3 cut(s)	315, 499, 578
CviQI	GTAC	1 cut(s)	590
DdeI	CTNAG	2 cut(s)	169, 482
DpnI	GATC	2 cut(s)	269, 582
DpnII	GATC	2 cut(s)	267, 580
EaeI	YGGCCR	2 cut(s)	299, 358
Eam1104I	CTCTTC	1 cut(s)	30
EarI	CTCTTC	1 cut(s)	30
EciI	GGCGGA	1 cut(s)	405
Eco130I	CCWWGG	2 cut(s)	194, 593
Eco24I	GRGCYC	1 cut(s)	159
Eco31I	GGTCTC	1 cut(s)	23
EcoT14I	CCWWGG	2 cut(s)	194, 593
EcoT38I	GRGCYC	1 cut(s)	159
ErhI	CCWWGG	2 cut(s)	194, 593
FaeI	CATG	3 cut(s)	318, 502, 581
FaiI	YATR	5 cut(s)	266, 316, 500, 534, 579
FalI	AAGNNNNNCTT	2 cut(s)	434, 466
FaqI	GGGAC	1 cut(s)	30
FatI	CATG	3 cut(s)	314, 498, 577
FbaI	TGATCA	2 cut(s)	267, 580
Fnu4HI	GCNGC	6 cut(s)	58, 112, 115, 174, 191, 302
FokI	GGATG	1 cut(s)	326
FriOI	GRGCYC	1 cut(s)	159
Fsp4HI	GCNGC	6 cut(s)	58, 112, 115, 174, 191, 302
FspBI	CTAG	2 cut(s)	290, 649
GluI	GCNGC	6 cut(s)	58, 112, 115, 174, 191, 302
GsaI	CCCAGC	2 cut(s)	17, 162
HaeIII	GGCC	3 cut(s)	60, 301, 360
Hin1II	CATG	3 cut(s)	318, 502, 581
HindIII	AAGCTT	1 cut(s)	147
HinfI	GANTC	2 cut(s)	521, 624
HphI	GGTGA	2 cut(s)	133, 424
Hpy188I	TCNGA	2 cut(s)	372, 526
Hpy188III	TCNNGA	3 cut(s)	548, 578, 584
Hpy99I	CGWCG	4 cut(s)	227, 230, 353, 366
HpyAV	CCTTC	3 cut(s)	316, 403, 551
HpyCH4III	ACNGT	3 cut(s)	248, 353, 376
HpyCH4V	TGCA	2 cut(s)	496, 619
HpyF10VI	GCNNNNNNNGC	3 cut(s)	173, 187, 616
HpyF3I	CTNAG	2 cut(s)	169, 482
Hsp92II	CATG	3 cut(s)	318, 502, 581
Ksp22I	TGATCA	2 cut(s)	267, 580
Kzo9I	GATC	2 cut(s)	267, 580
LguI	GCTCTTC	1 cut(s)	30
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	3 cut(s)	172, 538, 550
Lsp1109I	GCAGC	4 cut(s)	123, 126, 177, 185
LweI	GCATC	1 cut(s)	483
MaeI	CTAG	2 cut(s)	290, 649
MaeIII	GTNAC	2 cut(s)	104, 254
MalI	GATC	2 cut(s)	269, 582
MboI	GATC	2 cut(s)	267, 580
MboII	GAAGA	4 cut(s)	17, 242, 293, 331
MfeI	CAATTG	1 cut(s)	40
MhlI	GDGCHC	1 cut(s)	159
MluCI	AATT	4 cut(s)	40, 466, 529, 629
MlyI	GAGTC	1 cut(s)	618
MmeI	TCCRAC	2 cut(s)	53, 409
MnlI	CCTC	5 cut(s)	71, 178, 192, 271, 415
MseI	TTAA	4 cut(s)	75, 309, 384, 636
MslI	CAYNNNNRTG	1 cut(s)	263
MspA1I	CMGCKG	1 cut(s)	13
MunI	CAATTG	1 cut(s)	40
MwoI	GCNNNNNNNGC	3 cut(s)	173, 187, 616
NdeII	GATC	2 cut(s)	267, 580
NlaIII	CATG	3 cut(s)	318, 502, 581
NmuCI	GTSAC	1 cut(s)	104
NspI	RCATGY	1 cut(s)	502
PagI	TCATGA	1 cut(s)	577
PciI	ACATGT	1 cut(s)	498
PciSI	GCTCTTC	1 cut(s)	30
PfeI	GAWTC	1 cut(s)	521
PkrI	GCNGC	6 cut(s)	59, 113, 116, 175, 192, 303
PleI	GAGTC	1 cut(s)	618
PpsI	GAGTC	1 cut(s)	618
PscI	ACATGT	1 cut(s)	498
PshBI	ATTAAT	1 cut(s)	384
PsiI	TTATAA	1 cut(s)	534
PspFI	CCCAGC	2 cut(s)	13, 158
PvuII	CAGCTG	1 cut(s)	13
RsaI	GTAC	1 cut(s)	591
RsaNI	GTAC	1 cut(s)	590
RseI	CAYNNNNRTG	1 cut(s)	263
SapI	GCTCTTC	1 cut(s)	30
SaqAI	TTAA	4 cut(s)	75, 309, 384, 636
SatI	GCNGC	6 cut(s)	58, 112, 115, 174, 191, 302
Sau3AI	GATC	2 cut(s)	267, 580
SchI	GAGTC	1 cut(s)	618
SduI	GDGCHC	1 cut(s)	159
SetI	ASST	6 cut(s)	9, 15, 151, 414, 491, 595
SfaNI	GCATC	1 cut(s)	483
SmiMI	CAYNNNNRTG	1 cut(s)	263
SmlI	CTYRAG	1 cut(s)	451
SmoI	CTYRAG	1 cut(s)	451
SpeI	ACTAGT	1 cut(s)	289
Sse9I	AATT	4 cut(s)	40, 466, 529, 629
SsiI	CCGC	4 cut(s)	57, 302, 390, 610
SspMI	CTAG	2 cut(s)	290, 649
StyI	CCWWGG	2 cut(s)	194, 593
TaaI	ACNGT	3 cut(s)	248, 353, 376
TaqI	TCGA	2 cut(s)	63, 184
TasI	AATT	4 cut(s)	40, 466, 529, 629
TauI	GCSGC	2 cut(s)	60, 304
TfiI	GAWTC	1 cut(s)	521
Tru1I	TTAA	4 cut(s)	75, 309, 384, 636
Tru9I	TTAA	4 cut(s)	75, 309, 384, 636
TscAI	CASTG	1 cut(s)	381
TseFI	GTSAC	1 cut(s)	104
TseI	GCWGC	4 cut(s)	111, 114, 173, 190
Tsp45I	GTSAC	1 cut(s)	104
TspRI	CASTG	1 cut(s)	381
VspI	ATTAAT	1 cut(s)	384
XapI	RAATTY	1 cut(s)	466
XceI	RCATGY	1 cut(s)	502
XcmI	CCANNNNNNNNNTGG	1 cut(s)	350
XspI	CTAG	2 cut(s)	290, 649

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.