Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003240

Physical Location & Seq

Genomic Coordinates Reverse (-)

89979603 .. 89980773

Gene Structure 1171 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00153220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGAGCTTCAGCTGGGTCTCGCTCTTCCAACCAATAACAATTTTCCCGTCAAAGGCGGCCTCGACTTGAACATTAACGACTTTCTCTGCCACCCTACTATTAGTGACGGCAGCAGCAACAAGAACAAGAAGCGTAGTTTCACCCAAGCTTTTGAGCCCAGCAACGCCTCAGCAGCCGTGCCTCGAACGCTGCCTTTGTTGCTTTGGAACAACCAACCAAACGACGACGACGAAGATGACACCAAACATAGTTCTCGTTACACCATTATGATCAAAAATGAGGAAGATGGACTGGTCGGTTGGCCGCCCATTAAGTCATGGAAGAAGGAGACTTGCTTTCACATCCACGGCGACGGCGGTGGCCGTCGTCATCGGACAGTGGGGATTAATGGCGGAAACTCTTCATTTGTGAAGGTGAAAATGGAGGGAGTTGGAATAGCAAGAAAGATTGACTTGAGCCAACATCAAAATTTCCAAACACTCCTGAGAACCTTGATGCACATGTTTGACAAATGTGAGATAGATTCAGACAATTATAAACTCACTTATCAAGACAGGGAAGGAGACTGGCTTCTTGCTCATGATCAAGATGTGCCTTGGAGAACTTTCGTGCGGTCTGTGCAACGACTCAAATTGCTTAAGAGGGGAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0016020 GO:0031090 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

ko00510 ko01100 ko04075 map00510 map01100 map04075

Pfam Domains

Protein Families

Glyco_transf_17

Protein Analysis

217

Amino Acids

24.72

Weight (kDa)

7.77

Isoelectric Point (pI)

47.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	2 - 174	5e-18	AUX/IAA family
AUX_IAA	PF02309	175 - 216	5.1e-11	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003240)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32280 AT4G32280 AT4G32280
fragaria_vesca	FvH4_1g02700 FvH4_2g28970
malus_domestica	MD02G1027600.v1.1 MD08G1151300.v1.1 MD15G1169100.v1.1
prunus_persica	Prupe.1G481700_v2.0.a1 Prupe.1G481700_v2.0.a1 Prupe.1G481700_v2.0.a1 Prupe.7G247500_v2.0.a1
pyrus_communis	pycom02g02260 pycom08g12740 pycom15g15080
rosa_chinensis	RchiOBHm_Chr2g0087791 RchiOBHm_Chr6g0297821
rosa_laevigata	RLG00000011558 RLG00000015900
rosa_multiflora	Rmu_co8358427.1_g000001 Rmu_sc0003137.1_g000004 Rmu_sc0008385.1_g000003
rosa_roxburghii	Rroxscaffold_2G00153220 Rroxscaffold_7G00170170 Rroxscaffold_7G00179020
rosa_rugosa	Rorug01G0478700 Rorug06G0275700
rosa_samantha	Rh2AG033100 Rh2BG032200 Rh2CG032900 Rh2DG032700 Rh6AG386400 Rh6BG395000 Rh6CG400700 Rh6DG387100
rosa_wichuraiana	Rw2G002580 Rw6G033680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	537
AciI	CCGC	5 cut(s)	57, 305, 357, 393, 613
AcoI	YGGCCR	2 cut(s)	302, 361
AcsI	RAATTY	1 cut(s)	469
AfiI	CCNNNNNNNGG	1 cut(s)	53
AflII	CTTAAG	1 cut(s)	638
AflIII	ACRYGT	1 cut(s)	501
AgsI	TTSAA	1 cut(s)	70
AluBI	AGCT	3 cut(s)	7, 13, 149
AluI	AGCT	3 cut(s)	7, 13, 149
Alw26I	GTCTC	4 cut(s)	23, 323, 558, 642
AoxI	GGCC	3 cut(s)	58, 302, 361
ApeKI	GCWGC	4 cut(s)	111, 114, 173, 190
ApoI	RAATTY	1 cut(s)	469
AseI	ATTAAT	1 cut(s)	387
Asp700I	GAANNNNTTC	1 cut(s)	400
AsuHPI	GGTGA	2 cut(s)	133, 427
BanII	GRGCYC	1 cut(s)	159
BbvCI	CCTCAGC	1 cut(s)	169
BbvI	GCAGC	4 cut(s)	123, 126, 177, 185
BccI	CCATC	1 cut(s)	281
BceAI	ACGGC	5 cut(s)	124, 161, 348, 364, 370
BclI	TGATCA	2 cut(s)	270, 583
BcoDI	GTCTC	4 cut(s)	23, 323, 558, 642
BfaI	CTAG	1 cut(s)	652
BfrI	CTTAAG	1 cut(s)	638
BisI	GCNGC	6 cut(s)	58, 112, 115, 174, 191, 305
BlsI	GCNGC	6 cut(s)	59, 113, 116, 175, 192, 306
BmsI	GCATC	1 cut(s)	486
Bpu10I	CCTNAGC	1 cut(s)	169
BpuEI	CTTGAG	1 cut(s)	475
BsaI	GGTCTC	1 cut(s)	23
BsaJI	CCNNGG	2 cut(s)	346, 596
Bsc4I	CCNNNNNNNGG	1 cut(s)	53
Bse1I	ACTGG	2 cut(s)	297, 572
BseDI	CCNNGG	2 cut(s)	346, 596
BseGI	GGATG	1 cut(s)	342
BseLI	CCNNNNNNNGG	1 cut(s)	53
BseMII	CTCAG	2 cut(s)	183, 476
BseNI	ACTGG	2 cut(s)	297, 572
BseXI	GCAGC	4 cut(s)	123, 126, 177, 185
BseYI	CCCAGC	2 cut(s)	13, 158
BshFI	GGCC	3 cut(s)	60, 304, 363
BslI	CCNNNNNNNGG	1 cut(s)	53
BsmAI	GTCTC	4 cut(s)	23, 323, 558, 642
BsnI	GGCC	3 cut(s)	60, 304, 363
Bso31I	GGTCTC	1 cut(s)	23
Bsp1286I	GDGCHC	1 cut(s)	159
Bsp143I	GATC	2 cut(s)	270, 583
BspACI	CCGC	5 cut(s)	57, 305, 357, 393, 613
BspANI	GGCC	3 cut(s)	60, 304, 363
BspCNI	CTCAG	2 cut(s)	182, 477
BspHI	TCATGA	1 cut(s)	580
BspQI	GCTCTTC	1 cut(s)	30
BspTI	CTTAAG	1 cut(s)	638
BspTNI	GGTCTC	1 cut(s)	23
BsrI	ACTGG	2 cut(s)	297, 572
BssECI	CCNNGG	2 cut(s)	346, 596
BssMI	GATC	2 cut(s)	270, 583
BssT1I	CCWWGG	1 cut(s)	596
Bst4CI	ACNGT	1 cut(s)	379
Bst6I	CTCTTC	2 cut(s)	30, 406
BstAFI	CTTAAG	1 cut(s)	638
BstDEI	CTNAG	2 cut(s)	169, 485
BstDSI	CCRYGG	1 cut(s)	346
BstF5I	GGATG	1 cut(s)	342
BstKTI	GATC	2 cut(s)	273, 586
BstMAI	GTCTC	4 cut(s)	23, 323, 558, 642
BstMBI	GATC	2 cut(s)	270, 583
BstMWI	GCNNNNNNNGC	4 cut(s)	173, 187, 199, 619
BstNSI	RCATGY	1 cut(s)	505
BstV1I	GCAGC	4 cut(s)	123, 126, 177, 185
BsuRI	GGCC	3 cut(s)	60, 304, 363
BtgI	CCRYGG	1 cut(s)	346
BtsCI	GGATG	1 cut(s)	342
BtsIMutI	CAGTG	1 cut(s)	384
CciI	TCATGA	1 cut(s)	580
CviAII	CATG	3 cut(s)	318, 502, 581
DdeI	CTNAG	2 cut(s)	169, 485
DpnI	GATC	2 cut(s)	272, 585
DpnII	GATC	2 cut(s)	270, 583
EaeI	YGGCCR	2 cut(s)	302, 361
Eam1104I	CTCTTC	2 cut(s)	30, 406
EarI	CTCTTC	2 cut(s)	30, 406
EciI	GGCGGA	1 cut(s)	408
Eco130I	CCWWGG	1 cut(s)	596
Eco24I	GRGCYC	1 cut(s)	159
Eco31I	GGTCTC	1 cut(s)	23
EcoT14I	CCWWGG	1 cut(s)	596
EcoT38I	GRGCYC	1 cut(s)	159
ErhI	CCWWGG	1 cut(s)	596
FaeI	CATG	3 cut(s)	321, 505, 584
FaiI	YATR	6 cut(s)	249, 269, 319, 503, 537, 582
FalI	AAGNNNNNCTT	2 cut(s)	437, 469
FatI	CATG	3 cut(s)	317, 501, 580
FbaI	TGATCA	2 cut(s)	270, 583
Fnu4HI	GCNGC	6 cut(s)	58, 112, 115, 174, 191, 305
FokI	GGATG	1 cut(s)	329
FriOI	GRGCYC	1 cut(s)	159
Fsp4HI	GCNGC	6 cut(s)	58, 112, 115, 174, 191, 305
FspBI	CTAG	1 cut(s)	652
GluI	GCNGC	6 cut(s)	58, 112, 115, 174, 191, 305
GsaI	CCCAGC	2 cut(s)	17, 162
HaeIII	GGCC	3 cut(s)	60, 304, 363
Hin1II	CATG	3 cut(s)	321, 505, 584
HindIII	AAGCTT	1 cut(s)	147
HinfI	GANTC	2 cut(s)	524, 627
HphI	GGTGA	2 cut(s)	133, 427
Hpy188I	TCNGA	2 cut(s)	375, 529
Hpy188III	TCNNGA	4 cut(s)	484, 551, 581, 587
Hpy99I	CGWCG	5 cut(s)	227, 230, 233, 356, 369
HpyAV	CCTTC	3 cut(s)	319, 406, 554
HpyCH4III	ACNGT	1 cut(s)	379
HpyCH4V	TGCA	2 cut(s)	499, 622
HpyF10VI	GCNNNNNNNGC	4 cut(s)	173, 187, 199, 619
HpyF3I	CTNAG	2 cut(s)	169, 485
Hsp92II	CATG	3 cut(s)	321, 505, 584
Ksp22I	TGATCA	2 cut(s)	270, 583
Kzo9I	GATC	2 cut(s)	270, 583
LguI	GCTCTTC	1 cut(s)	30
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	5 cut(s)	172, 278, 497, 541, 553
Lsp1109I	GCAGC	4 cut(s)	123, 126, 177, 185
LweI	GCATC	1 cut(s)	486
MaeI	CTAG	1 cut(s)	652
MaeIII	GTNAC	2 cut(s)	104, 257
MalI	GATC	2 cut(s)	272, 585
MboI	GATC	2 cut(s)	270, 583
MboII	GAAGA	5 cut(s)	17, 245, 296, 334, 393
MhlI	GDGCHC	1 cut(s)	159
MluCI	AATT	4 cut(s)	40, 469, 532, 632
MlyI	GAGTC	1 cut(s)	621
MmeI	TCCRAC	2 cut(s)	53, 412
MnlI	CCTC	6 cut(s)	71, 178, 192, 274, 418, 636
MroXI	GAANNNNTTC	1 cut(s)	400
MseI	TTAA	4 cut(s)	75, 312, 387, 639
MslI	CAYNNNNRTG	1 cut(s)	266
MspA1I	CMGCKG	1 cut(s)	13
MspCI	CTTAAG	1 cut(s)	638
MwoI	GCNNNNNNNGC	4 cut(s)	173, 187, 199, 619
NdeII	GATC	2 cut(s)	270, 583
NlaIII	CATG	3 cut(s)	321, 505, 584
NmuCI	GTSAC	1 cut(s)	104
NspI	RCATGY	1 cut(s)	505
PagI	TCATGA	1 cut(s)	580
PciI	ACATGT	1 cut(s)	501
PciSI	GCTCTTC	1 cut(s)	30
PcsI	WCGNNNNNNNCGW	1 cut(s)	228
PdmI	GAANNNNTTC	1 cut(s)	400
PfeI	GAWTC	1 cut(s)	524
PkrI	GCNGC	6 cut(s)	59, 113, 116, 175, 192, 306
PleI	GAGTC	1 cut(s)	621
PpsI	GAGTC	1 cut(s)	621
PscI	ACATGT	1 cut(s)	501
PshBI	ATTAAT	1 cut(s)	387
PsiI	TTATAA	1 cut(s)	537
PspFI	CCCAGC	2 cut(s)	13, 158
PvuII	CAGCTG	1 cut(s)	13
RseI	CAYNNNNRTG	1 cut(s)	266
SapI	GCTCTTC	1 cut(s)	30
SaqAI	TTAA	4 cut(s)	75, 312, 387, 639
SatI	GCNGC	6 cut(s)	58, 112, 115, 174, 191, 305
Sau3AI	GATC	2 cut(s)	270, 583
SchI	GAGTC	1 cut(s)	621
SduI	GDGCHC	1 cut(s)	159
SetI	ASST	5 cut(s)	9, 15, 151, 417, 494
SfaNI	GCATC	1 cut(s)	486
SmiMI	CAYNNNNRTG	1 cut(s)	266
SmlI	CTYRAG	2 cut(s)	454, 638
SmoI	CTYRAG	2 cut(s)	454, 638
Sse9I	AATT	4 cut(s)	40, 469, 532, 632
SsiI	CCGC	5 cut(s)	57, 305, 357, 393, 613
SspMI	CTAG	1 cut(s)	652
StyI	CCWWGG	1 cut(s)	596
TaaI	ACNGT	1 cut(s)	379
TaqI	TCGA	2 cut(s)	63, 184
TasI	AATT	4 cut(s)	40, 469, 532, 632
TauI	GCSGC	2 cut(s)	60, 307
TfiI	GAWTC	1 cut(s)	524
Tru1I	TTAA	4 cut(s)	75, 312, 387, 639
Tru9I	TTAA	4 cut(s)	75, 312, 387, 639
TscAI	CASTG	1 cut(s)	384
TseFI	GTSAC	1 cut(s)	104
TseI	GCWGC	4 cut(s)	111, 114, 173, 190
Tsp45I	GTSAC	1 cut(s)	104
TspDTI	ATGAA	1 cut(s)	393
TspRI	CASTG	1 cut(s)	384
Vha464I	CTTAAG	1 cut(s)	638
VspI	ATTAAT	1 cut(s)	387
XapI	RAATTY	1 cut(s)	469
XceI	RCATGY	1 cut(s)	505
XmnI	GAANNNNTTC	1 cut(s)	400
XspI	CTAG	1 cut(s)	652

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.