Rh2CG032900

Glycosyltransferase family 17

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0003240
Physical Location & Seq
Forward (+)
2568116 .. 2571075
2960 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG032900.1

Sequence Viewer

Length: 657 bp
ATGGAGCTTCAGCTGGGTCTCGCTCTTCCAACCAATAACAATTTTCCCGTCAAAGGCGGCCTCGACTTGAACATTAACGACTTTCTCTGCCACCCTACTATTAGTGACGGCAGCAGCAACAAGAACAAGAAGCGTAGTTTCACCCAAGCTTTTGAGCCCAGCAATGCCTCAGCAGCCGTGCCTCGAACGCTGCCTTGGTTGCTTTGGAACAACCAACCAAACGACGACAACGACGACGAAGATGACACCAAACACAGTTCTCGTTACACCATTATGATCAAAAATGAGGAAGATGGACTGGTGGGTTGGCCGCCCATTAAGTCATGGAAGAAGGAGACTTGCTTTCACATCCACGGCGACGGCGGTGGCCGTCGTCATCGGACAGTGGGGATTAATGGCGGAAACTCTACATTTGTGAAGGTGAAAATGGAGGGAGTTGGAATAGCAAGAAAGATTGACTTGAGCCAACATCAAAATTTCCAAACACTCCTAAGAACCTTGATGCACATGTTTGACAAATGTGAGATAGATTCAGACAATTATAAACTCACTTATCAAGACAGGGAAGGAGACTGGCTTCTTGCTCATGATCAAGATGTACCTTGGAGGTATAAAAAAATACCCTCTAATACTATTACTAATTATAAGATGATCTAA

Protein Analysis

218

Amino Acids

24.93

Weight (kDa)

6.7

Isoelectric Point (pI)

45.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AUX_IAA PF02309 2 - 175 1.7e-18 AUX/IAA family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 543, 645
AciI CCGC 4 cut(s) 57, 311, 363, 399
AcoI YGGCCR 2 cut(s) 308, 367
AcsI RAATTY 1 cut(s) 475
AfaI GTAC 1 cut(s) 600
AfiI CCNNNNNNNGG 1 cut(s) 53
AflIII ACRYGT 1 cut(s) 507
AgsI TTSAA 1 cut(s) 70
AjuI GAANNNNNNNTTGG 2 cut(s) 178, 210
AluBI AGCT 3 cut(s) 7, 13, 149
AluI AGCT 3 cut(s) 7, 13, 149
Alw26I GTCTC 3 cut(s) 23, 329, 564
AoxI GGCC 3 cut(s) 58, 308, 367
ApeKI GCWGC 4 cut(s) 111, 114, 173, 190
ApoI RAATTY 1 cut(s) 475
AseI ATTAAT 1 cut(s) 393
AsuHPI GGTGA 2 cut(s) 133, 433
BanII GRGCYC 1 cut(s) 159
BbvCI CCTCAGC 1 cut(s) 169
BbvI GCAGC 4 cut(s) 123, 126, 177, 185
BccI CCATC 1 cut(s) 287
BceAI ACGGC 5 cut(s) 124, 161, 354, 370, 376
BclI TGATCA 2 cut(s) 276, 589
BcoDI GTCTC 3 cut(s) 23, 329, 564
BisI GCNGC 6 cut(s) 58, 112, 115, 174, 191, 311
BlsI GCNGC 6 cut(s) 59, 113, 116, 175, 192, 312
BmsI GCATC 1 cut(s) 492
Bpu10I CCTNAGC 1 cut(s) 169
BpuEI CTTGAG 1 cut(s) 481
BsaI GGTCTC 1 cut(s) 23
BsaJI CCNNGG 3 cut(s) 194, 352, 602
Bsc4I CCNNNNNNNGG 1 cut(s) 53
Bse1I ACTGG 2 cut(s) 303, 578
Bse3DI GCAATG 1 cut(s) 169
BseDI CCNNGG 3 cut(s) 194, 352, 602
BseGI GGATG 1 cut(s) 348
BseLI CCNNNNNNNGG 1 cut(s) 53
BseMI GCAATG 1 cut(s) 169
BseMII CTCAG 1 cut(s) 183
BseNI ACTGG 2 cut(s) 303, 578
BseXI GCAGC 4 cut(s) 123, 126, 177, 185
BseYI CCCAGC 2 cut(s) 13, 158
BshFI GGCC 3 cut(s) 60, 310, 369
BslI CCNNNNNNNGG 1 cut(s) 53
BsmAI GTCTC 3 cut(s) 23, 329, 564
BsnI GGCC 3 cut(s) 60, 310, 369
Bso31I GGTCTC 1 cut(s) 23
Bsp1286I GDGCHC 1 cut(s) 159
Bsp143I GATC 3 cut(s) 276, 589, 651
BspACI CCGC 4 cut(s) 57, 311, 363, 399
BspANI GGCC 3 cut(s) 60, 310, 369
BspCNI CTCAG 1 cut(s) 182
BspHI TCATGA 1 cut(s) 586
BspQI GCTCTTC 1 cut(s) 30
BspTNI GGTCTC 1 cut(s) 23
BsrDI GCAATG 1 cut(s) 169
BsrI ACTGG 2 cut(s) 303, 578
BssECI CCNNGG 3 cut(s) 194, 352, 602
BssMI GATC 3 cut(s) 276, 589, 651
BssT1I CCWWGG 2 cut(s) 194, 602
Bst4CI ACNGT 2 cut(s) 257, 385
Bst6I CTCTTC 1 cut(s) 30
BstDEI CTNAG 2 cut(s) 169, 491
BstDSI CCRYGG 1 cut(s) 352
BstF5I GGATG 1 cut(s) 348
BstKTI GATC 3 cut(s) 279, 592, 654
BstMAI GTCTC 3 cut(s) 23, 329, 564
BstMBI GATC 3 cut(s) 276, 589, 651
BstMWI GCNNNNNNNGC 3 cut(s) 173, 187, 199
BstNSI RCATGY 1 cut(s) 511
BstV1I GCAGC 4 cut(s) 123, 126, 177, 185
BsuRI GGCC 3 cut(s) 60, 310, 369
BtgI CCRYGG 1 cut(s) 352
BtsCI GGATG 1 cut(s) 348
BtsIMutI CAGTG 1 cut(s) 390
CciI TCATGA 1 cut(s) 586
Csp6I GTAC 1 cut(s) 599
CviAII CATG 3 cut(s) 324, 508, 587
CviQI GTAC 1 cut(s) 599
DdeI CTNAG 2 cut(s) 169, 491
DpnI GATC 3 cut(s) 278, 591, 653
DpnII GATC 3 cut(s) 276, 589, 651
EaeI YGGCCR 2 cut(s) 308, 367
Eam1104I CTCTTC 1 cut(s) 30
EarI CTCTTC 1 cut(s) 30
EciI GGCGGA 1 cut(s) 414
Eco130I CCWWGG 2 cut(s) 194, 602
Eco24I GRGCYC 1 cut(s) 159
Eco31I GGTCTC 1 cut(s) 23
EcoT14I CCWWGG 2 cut(s) 194, 602
EcoT38I GRGCYC 1 cut(s) 159
ErhI CCWWGG 2 cut(s) 194, 602
FaeI CATG 3 cut(s) 327, 511, 590
FaiI YATR 7 cut(s) 275, 325, 509, 543, 588, 612, 645
FalI AAGNNNNNCTT 2 cut(s) 443, 475
FatI CATG 3 cut(s) 323, 507, 586
FbaI TGATCA 2 cut(s) 276, 589
Fnu4HI GCNGC 6 cut(s) 58, 112, 115, 174, 191, 311
FokI GGATG 1 cut(s) 335
FriOI GRGCYC 1 cut(s) 159
Fsp4HI GCNGC 6 cut(s) 58, 112, 115, 174, 191, 311
GluI GCNGC 6 cut(s) 58, 112, 115, 174, 191, 311
GsaI CCCAGC 2 cut(s) 17, 162
HaeIII GGCC 3 cut(s) 60, 310, 369
Hin1II CATG 3 cut(s) 327, 511, 590
HindIII AAGCTT 1 cut(s) 147
HinfI GANTC 1 cut(s) 530
HphI GGTGA 2 cut(s) 133, 433
Hpy188I TCNGA 2 cut(s) 381, 535
Hpy188III TCNNGA 3 cut(s) 557, 587, 593
Hpy99I CGWCG 5 cut(s) 227, 236, 239, 362, 375
HpyAV CCTTC 3 cut(s) 325, 412, 560
HpyCH4III ACNGT 2 cut(s) 257, 385
HpyCH4V TGCA 1 cut(s) 505
HpyF10VI GCNNNNNNNGC 3 cut(s) 173, 187, 199
HpyF3I CTNAG 2 cut(s) 169, 491
Hsp92II CATG 3 cut(s) 327, 511, 590
Ksp22I TGATCA 2 cut(s) 276, 589
Kzo9I GATC 3 cut(s) 276, 589, 651
LguI GCTCTTC 1 cut(s) 30
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 4 cut(s) 172, 284, 547, 559
Lsp1109I GCAGC 4 cut(s) 123, 126, 177, 185
LweI GCATC 1 cut(s) 492
MaeIII GTNAC 2 cut(s) 104, 263
MalI GATC 3 cut(s) 278, 591, 653
MboI GATC 3 cut(s) 276, 589, 651
MboII GAAGA 4 cut(s) 17, 251, 302, 340
MhlI GDGCHC 1 cut(s) 159
MluCI AATT 4 cut(s) 40, 475, 538, 640
MmeI TCCRAC 2 cut(s) 53, 418
MnlI CCTC 7 cut(s) 71, 178, 192, 280, 424, 600, 634
MseI TTAA 3 cut(s) 75, 318, 393
MslI CAYNNNNRTG 1 cut(s) 272
MspA1I CMGCKG 1 cut(s) 13
MwoI GCNNNNNNNGC 3 cut(s) 173, 187, 199
NdeII GATC 3 cut(s) 276, 589, 651
NlaIII CATG 3 cut(s) 327, 511, 590
NmuCI GTSAC 1 cut(s) 104
NspI RCATGY 1 cut(s) 511
PagI TCATGA 1 cut(s) 586
PciI ACATGT 1 cut(s) 507
PciSI GCTCTTC 1 cut(s) 30
PcsI WCGNNNNNNNCGW 2 cut(s) 228, 231
PfeI GAWTC 1 cut(s) 530
PkrI GCNGC 6 cut(s) 59, 113, 116, 175, 192, 312
PscI ACATGT 1 cut(s) 507
PshBI ATTAAT 1 cut(s) 393
PsiI TTATAA 2 cut(s) 543, 645
PspFI CCCAGC 2 cut(s) 13, 158
PvuII CAGCTG 1 cut(s) 13
RsaI GTAC 1 cut(s) 600
RsaNI GTAC 1 cut(s) 599
RseI CAYNNNNRTG 1 cut(s) 272
SapI GCTCTTC 1 cut(s) 30
SaqAI TTAA 3 cut(s) 75, 318, 393
SatI GCNGC 6 cut(s) 58, 112, 115, 174, 191, 311
Sau3AI GATC 3 cut(s) 276, 589, 651
SduI GDGCHC 1 cut(s) 159
SetI ASST 7 cut(s) 9, 15, 151, 423, 500, 604, 611
SfaNI GCATC 1 cut(s) 492
SmiMI CAYNNNNRTG 1 cut(s) 272
SmlI CTYRAG 1 cut(s) 460
SmoI CTYRAG 1 cut(s) 460
Sse9I AATT 4 cut(s) 40, 475, 538, 640
SsiI CCGC 4 cut(s) 57, 311, 363, 399
StyI CCWWGG 2 cut(s) 194, 602
TaaI ACNGT 2 cut(s) 257, 385
TaqI TCGA 2 cut(s) 63, 184
TasI AATT 4 cut(s) 40, 475, 538, 640
TauI GCSGC 2 cut(s) 60, 313
TfiI GAWTC 1 cut(s) 530
Tru1I TTAA 3 cut(s) 75, 318, 393
Tru9I TTAA 3 cut(s) 75, 318, 393
TscAI CASTG 1 cut(s) 390
TseFI GTSAC 1 cut(s) 104
TseI GCWGC 4 cut(s) 111, 114, 173, 190
Tsp45I GTSAC 1 cut(s) 104
TspRI CASTG 1 cut(s) 390
VspI ATTAAT 1 cut(s) 393
XapI RAATTY 1 cut(s) 475
XceI RCATGY 1 cut(s) 511
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.