Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0003240

Physical Location & Seq

Genomic Coordinates Forward (+)

58289031 .. 58290977

Gene Structure 1947 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G033680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGAGCTTCAACTGGGTTTGGCTCTGTCGCTTCCGGTTCATCAGAACGCTCCTGTCAAAGGGTTTGATGTAACCAGTCATGGGGTGATGGGTTTGGATTTATGGAGCTATGGATGCTGCTTGGAGAGCAAAAAGAAGCGCAGTCACCACACGGCTTTCGAGAAGATTGGAAGTGACGATGAGTCGAAGATGTTGCCTTTGTTGTTGTGGCATGGCCAGCCGGATGAGGAAGACGATGATGGCAAGAGGCAAAAGAAAAAGACTCTTGCAGTCTCATCGATACCAATGATGATGGAGAAGGAAACCAAGTTGTTGGGTGGCCACCAATTAAATCATGGAGGAAGAAGATGTTTTTTCCTGATCATCAACACCATGGTCGTGGCCGCCACGATCTCCAGAATCATCAGAATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AUX_IAA LRR_1 LRR_4 LRR_8 Malectin

Protein Analysis

137

Amino Acids

15.34

Weight (kDa)

8.47

Isoelectric Point (pI)

46.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003240)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32280 AT4G32280 AT4G32280
fragaria_vesca	FvH4_1g02700 FvH4_2g28970
malus_domestica	MD02G1027600.v1.1 MD08G1151300.v1.1 MD15G1169100.v1.1
prunus_persica	Prupe.1G481700_v2.0.a1 Prupe.1G481700_v2.0.a1 Prupe.1G481700_v2.0.a1 Prupe.7G247500_v2.0.a1
pyrus_communis	pycom02g02260 pycom08g12740 pycom15g15080
rosa_chinensis	RchiOBHm_Chr2g0087791 RchiOBHm_Chr6g0297821
rosa_laevigata	RLG00000011558 RLG00000015900
rosa_multiflora	Rmu_co8358427.1_g000001 Rmu_sc0003137.1_g000004 Rmu_sc0008385.1_g000003
rosa_roxburghii	Rroxscaffold_2G00153220 Rroxscaffold_7G00170170 Rroxscaffold_7G00179020
rosa_rugosa	Rorug01G0478700 Rorug06G0275700
rosa_samantha	Rh2AG033100 Rh2BG032200 Rh2CG032900 Rh2DG032700 Rh6AG386400 Rh6BG395000 Rh6CG400700 Rh6DG387100
rosa_wichuraiana	Rw2G002580 Rw6G033680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	384
AcoI	YGGCCR	3 cut(s)	214, 319, 381
AfiI	CCNNNNNNNGG	2 cut(s)	59, 81
AgsI	TTSAA	1 cut(s)	11
AhdI	GACNNNNNGTC	1 cut(s)	181
AluBI	AGCT	2 cut(s)	7, 108
AluI	AGCT	2 cut(s)	7, 108
Alw26I	GTCTC	1 cut(s)	277
AoxI	GGCC	3 cut(s)	214, 319, 381
ApeKI	GCWGC	1 cut(s)	117
AspLEI	GCGC	1 cut(s)	141
AsuHPI	GGTGA	2 cut(s)	97, 137
BalI	TGGCCA	2 cut(s)	216, 321
BbsI	GAAGAC	1 cut(s)	237
BbvI	GCAGC	1 cut(s)	104
BccI	CCATC	3 cut(s)	82, 233, 286
BceAI	ACGGC	1 cut(s)	168
BcgI	CGANNNNNNTGC	4 cut(s)	175, 209, 258, 292
BclI	TGATCA	1 cut(s)	360
BcoDI	GTCTC	1 cut(s)	277
BisI	GCNGC	2 cut(s)	118, 384
BlsI	GCNGC	2 cut(s)	119, 385
BmeRI	GACNNNNNGTC	1 cut(s)	181
BmrI	ACTGGG	1 cut(s)	23
BmsI	GCATC	1 cut(s)	104
BmuI	ACTGGG	1 cut(s)	23
BpiI	GAAGAC	1 cut(s)	237
BpmI	CTGGAG	1 cut(s)	379
Bsa29I	ATCGAT	1 cut(s)	278
BsaJI	CCNNGG	1 cut(s)	372
BsaWI	WCCGGW	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	2 cut(s)	59, 81
Bse1I	ACTGG	2 cut(s)	18, 75
BseCI	ATCGAT	1 cut(s)	278
BseDI	CCNNGG	1 cut(s)	372
BseGI	GGATG	2 cut(s)	119, 229
BseLI	CCNNNNNNNGG	2 cut(s)	59, 81
BseNI	ACTGG	2 cut(s)	18, 75
BseXI	GCAGC	1 cut(s)	104
BshFI	GGCC	3 cut(s)	216, 321, 383
BshVI	ATCGAT	1 cut(s)	278
BsiSI	CCGG	2 cut(s)	35, 221
BslI	CCNNNNNNNGG	2 cut(s)	59, 81
BsmAI	GTCTC	1 cut(s)	277
BsnI	GGCC	3 cut(s)	216, 321, 383
Bsp143I	GATC	2 cut(s)	360, 390
Bsp19I	CCATGG	1 cut(s)	372
BspACI	CCGC	1 cut(s)	384
BspANI	GGCC	3 cut(s)	216, 321, 383
BspDI	ATCGAT	1 cut(s)	278
BsrI	ACTGG	2 cut(s)	18, 75
BssECI	CCNNGG	1 cut(s)	372
BssMI	GATC	2 cut(s)	360, 390
BssT1I	CCWWGG	1 cut(s)	372
BstC8I	GCNNGC	1 cut(s)	218
BstDSI	CCRYGG	1 cut(s)	372
BstENI	CCTNNNNNAGG	1 cut(s)	57
BstF5I	GGATG	2 cut(s)	119, 229
BstHHI	GCGC	1 cut(s)	141
BstKTI	GATC	2 cut(s)	363, 393
BstMAI	GTCTC	1 cut(s)	277
BstMBI	GATC	2 cut(s)	360, 390
BstMWI	GCNNNNNNNGC	3 cut(s)	114, 126, 217
BstV1I	GCAGC	1 cut(s)	104
BstV2I	GAAGAC	1 cut(s)	237
BstXI	CCANNNNNNTGG	2 cut(s)	313, 379
Bsu15I	ATCGAT	1 cut(s)	278
BsuRI	GGCC	3 cut(s)	216, 321, 383
BsuTUI	ATCGAT	1 cut(s)	278
BtgI	CCRYGG	1 cut(s)	372
BtsCI	GGATG	2 cut(s)	119, 229
Cac8I	GCNNGC	1 cut(s)	218
CfoI	GCGC	1 cut(s)	141
ClaI	ATCGAT	1 cut(s)	278
CviAII	CATG	4 cut(s)	80, 212, 335, 373
CviJI	RGCY	8 cut(s)	7, 23, 108, 155, 216, 220, 321, 383
CviKI_1	RGCY	8 cut(s)	7, 23, 108, 155, 216, 220, 321, 383
DpnI	GATC	2 cut(s)	362, 392
DpnII	GATC	2 cut(s)	360, 390
DriI	GACNNNNNGTC	1 cut(s)	181
EaeI	YGGCCR	3 cut(s)	214, 319, 381
Eam1105I	GACNNNNNGTC	1 cut(s)	181
Eco130I	CCWWGG	1 cut(s)	372
EcoNI	CCTNNNNNAGG	1 cut(s)	57
EcoT14I	CCWWGG	1 cut(s)	372
ErhI	CCWWGG	1 cut(s)	372
FaeI	CATG	4 cut(s)	83, 215, 338, 376
FaiI	YATR	7 cut(s)	81, 103, 111, 213, 336, 374, 412
FatI	CATG	4 cut(s)	79, 211, 334, 372
FbaI	TGATCA	1 cut(s)	360
Fnu4HI	GCNGC	2 cut(s)	118, 384
FokI	GGATG	2 cut(s)	126, 236
Fsp4HI	GCNGC	2 cut(s)	118, 384
GlaI	GCGC	1 cut(s)	140
GluI	GCNGC	2 cut(s)	118, 384
GsuI	CTGGAG	1 cut(s)	379
HaeIII	GGCC	3 cut(s)	216, 321, 383
HapII	CCGG	2 cut(s)	35, 221
HhaI	GCGC	1 cut(s)	141
Hin1II	CATG	4 cut(s)	83, 215, 338, 376
Hin6I	GCGC	1 cut(s)	139
HinP1I	GCGC	1 cut(s)	139
HinfI	GANTC	3 cut(s)	182, 262, 399
HpaII	CCGG	2 cut(s)	35, 221
HphI	GGTGA	2 cut(s)	97, 137
Hpy188I	TCNGA	2 cut(s)	45, 407
Hpy188III	TCNNGA	3 cut(s)	160, 358, 396
HpyAV	CCTTC	1 cut(s)	292
HpyCH4V	TGCA	1 cut(s)	269
HpyF10VI	GCNNNNNNNGC	3 cut(s)	114, 126, 217
Hsp92II	CATG	4 cut(s)	83, 215, 338, 376
HspAI	GCGC	1 cut(s)	139
Ksp22I	TGATCA	1 cut(s)	360
Kzo9I	GATC	2 cut(s)	360, 390
LmnI	GCTCC	3 cut(s)	4, 55, 105
LpnPI	CCDG	7 cut(s)	48, 66, 88, 230, 234, 371, 409
Lsp1109I	GCAGC	1 cut(s)	104
LweI	GCATC	1 cut(s)	104
MaeIII	GTNAC	3 cut(s)	70, 143, 173
MalI	GATC	2 cut(s)	362, 392
MboI	GATC	2 cut(s)	360, 390
MboII	GAAGA	5 cut(s)	175, 199, 242, 354, 357
MlsI	TGGCCA	2 cut(s)	216, 321
MluCI	AATT	1 cut(s)	326
MluNI	TGGCCA	2 cut(s)	216, 321
MlyI	GAGTC	2 cut(s)	191, 256
MnlI	CCTC	3 cut(s)	220, 240, 332
Mox20I	TGGCCA	2 cut(s)	216, 321
MscI	TGGCCA	2 cut(s)	216, 321
MseI	TTAA	1 cut(s)	329
MslI	CAYNNNNRTG	1 cut(s)	377
Msp20I	TGGCCA	2 cut(s)	216, 321
MspI	CCGG	2 cut(s)	35, 221
MwoI	GCNNNNNNNGC	3 cut(s)	114, 126, 217
NcoI	CCATGG	1 cut(s)	372
NdeII	GATC	2 cut(s)	360, 390
NlaIII	CATG	4 cut(s)	83, 215, 338, 376
NmuCI	GTSAC	2 cut(s)	143, 173
PfeI	GAWTC	1 cut(s)	399
PkrI	GCNGC	2 cut(s)	119, 385
PleI	GAGTC	2 cut(s)	190, 256
PpsI	GAGTC	2 cut(s)	190, 256
RseI	CAYNNNNRTG	1 cut(s)	377
SaqAI	TTAA	1 cut(s)	329
SatI	GCNGC	2 cut(s)	118, 384
Sau3AI	GATC	2 cut(s)	360, 390
SchI	GAGTC	2 cut(s)	191, 256
SetI	ASST	2 cut(s)	9, 110
SfaNI	GCATC	1 cut(s)	104
SmiMI	CAYNNNNRTG	1 cut(s)	377
Sse9I	AATT	1 cut(s)	326
SsiI	CCGC	1 cut(s)	384
StyI	CCWWGG	1 cut(s)	372
TaqI	TCGA	3 cut(s)	159, 185, 278
TasI	AATT	1 cut(s)	326
TauI	GCSGC	1 cut(s)	386
TfiI	GAWTC	1 cut(s)	399
Tru1I	TTAA	1 cut(s)	329
Tru9I	TTAA	1 cut(s)	329
TseFI	GTSAC	2 cut(s)	143, 173
TseI	GCWGC	1 cut(s)	117
Tsp45I	GTSAC	2 cut(s)	143, 173
TspDTI	ATGAA	1 cut(s)	29
XagI	CCTNNNNNAGG	1 cut(s)	57
XcmI	CCANNNNNNNNNTGG	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.