Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8358427.1

Orthogroup ID

OG0003240

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 974

Gene Structure 974 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8358427.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 464 bp

atgttgcctttgtttttgtggtatggccagccggatgaggaagacgatgatggcaaggggcaaaagaaaagagactcttgcagtctcatcgataccaatgatgatggagaaggaaaccaagttgttgggtggccaccaattaaatcatggaggaagaagatgttttttcctgatcatcaacaccatggtcgtggccgccacgatctccagaatcatcagaatatagtggcaaaggaaaatgatgggccagaaaattccatgtacgtaaaggtgaagatggaaggagtgggaattctgaggaagatagatataaagctgcatcactcttatcagacacttagagactccttgatagccatgtttgccaaatgcaaaggatgtgagaatgaggatactgcagattttactgtggcttatcaggacgtacatggagattggtcggttgctggagatgttccctggca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AUX_IAA LRR_1 LRR_4 LRR_8 Malectin

Protein Analysis

154

Amino Acids

17.65

Weight (kDa)

5.54

Isoelectric Point (pI)

31.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003240)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32280 AT4G32280 AT4G32280
fragaria_vesca	FvH4_1g02700 FvH4_2g28970
malus_domestica	MD02G1027600.v1.1 MD08G1151300.v1.1 MD15G1169100.v1.1
prunus_persica	Prupe.1G481700_v2.0.a1 Prupe.1G481700_v2.0.a1 Prupe.1G481700_v2.0.a1 Prupe.7G247500_v2.0.a1
pyrus_communis	pycom02g02260 pycom08g12740 pycom15g15080
rosa_chinensis	RchiOBHm_Chr2g0087791 RchiOBHm_Chr6g0297821
rosa_laevigata	RLG00000011558 RLG00000015900
rosa_multiflora	Rmu_co8358427.1_g000001 Rmu_sc0003137.1_g000004 Rmu_sc0008385.1_g000003
rosa_roxburghii	Rroxscaffold_2G00153220 Rroxscaffold_7G00170170 Rroxscaffold_7G00179020
rosa_rugosa	Rorug01G0478700 Rorug06G0275700
rosa_samantha	Rh2AG033100 Rh2BG032200 Rh2CG032900 Rh2DG032700 Rh6AG386400 Rh6BG395000 Rh6CG400700 Rh6DG387100
rosa_wichuraiana	Rw2G002580 Rw6G033680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	196
AcoI	YGGCCR	3 cut(s)	25, 131, 193
AcsI	RAATTY	2 cut(s)	253, 291
AfaI	GTAC	2 cut(s)	263, 426
AjnI	CCWGG	1 cut(s)	458
AluBI	AGCT	1 cut(s)	316
AluI	AGCT	1 cut(s)	316
Alw26I	GTCTC	3 cut(s)	66, 89, 336
AoxI	GGCC	4 cut(s)	25, 131, 193, 245
ApeKI	GCWGC	1 cut(s)	316
ApoI	RAATTY	2 cut(s)	253, 291
AspS9I	GGNCC	1 cut(s)	245
AsuHPI	GGTGA	1 cut(s)	283
BalI	TGGCCA	2 cut(s)	27, 133
BbsI	GAAGAC	1 cut(s)	48
BbvI	GCAGC	1 cut(s)	303
BccI	CCATC	4 cut(s)	44, 98, 236, 271
BcgI	CGANNNNNNTGC	2 cut(s)	70, 104
BciT130I	CCWGG	1 cut(s)	460
BciVI	GTATCC	1 cut(s)	385
BclI	TGATCA	1 cut(s)	172
BcoDI	GTCTC	3 cut(s)	66, 89, 336
BfmI	CTRYAG	1 cut(s)	396
BfuI	GTATCC	1 cut(s)	385
BisI	GCNGC	2 cut(s)	196, 317
BlsI	GCNGC	2 cut(s)	197, 318
Bme1390I	CCNGG	1 cut(s)	460
BmgT120I	GGNCC	1 cut(s)	245
BmrFI	CCNGG	1 cut(s)	460
BmsI	GCATC	1 cut(s)	328
BpiI	GAAGAC	1 cut(s)	48
BpmI	CTGGAG	1 cut(s)	191
Bsa29I	ATCGAT	1 cut(s)	90
BsaAI	YACGTR	1 cut(s)	265
BsaJI	CCNNGG	2 cut(s)	184, 458
BseBI	CCWGG	1 cut(s)	460
BseCI	ATCGAT	1 cut(s)	90
BseDI	CCNNGG	2 cut(s)	184, 458
BseGI	GGATG	2 cut(s)	40, 383
BseMII	CTCAG	1 cut(s)	287
BseXI	GCAGC	1 cut(s)	303
BshFI	GGCC	4 cut(s)	27, 133, 195, 247
BshVI	ATCGAT	1 cut(s)	90
BsiSI	CCGG	1 cut(s)	32
BsmAI	GTCTC	3 cut(s)	66, 89, 336
BsnI	GGCC	4 cut(s)	27, 133, 195, 247
Bsp143I	GATC	2 cut(s)	172, 202
Bsp19I	CCATGG	1 cut(s)	184
BspACI	CCGC	1 cut(s)	196
BspANI	GGCC	4 cut(s)	27, 133, 195, 247
BspCNI	CTCAG	1 cut(s)	288
BspDI	ATCGAT	1 cut(s)	90
BspMAI	CTGCAG	1 cut(s)	400
BssECI	CCNNGG	2 cut(s)	184, 458
BssMI	GATC	2 cut(s)	172, 202
BssT1I	CCWWGG	1 cut(s)	184
Bst2UI	CCWGG	1 cut(s)	460
Bst4CI	ACNGT	1 cut(s)	409
BstBAI	YACGTR	1 cut(s)	265
BstC8I	GCNNGC	1 cut(s)	29
BstDEI	CTNAG	2 cut(s)	296, 338
BstDSI	CCRYGG	1 cut(s)	184
BstF5I	GGATG	2 cut(s)	40, 383
BstKTI	GATC	2 cut(s)	175, 205
BstMAI	GTCTC	3 cut(s)	66, 89, 336
BstMBI	GATC	2 cut(s)	172, 202
BstMWI	GCNNNNNNNGC	1 cut(s)	362
BstNI	CCWGG	1 cut(s)	460
BstSCI	CCNGG	1 cut(s)	458
BstSFI	CTRYAG	1 cut(s)	396
BstSNI	TACGTA	1 cut(s)	265
BstV1I	GCAGC	1 cut(s)	303
BstV2I	GAAGAC	1 cut(s)	48
BstXI	CCANNNNNNTGG	2 cut(s)	125, 191
Bsu15I	ATCGAT	1 cut(s)	90
BsuI	GTATCC	1 cut(s)	385
BsuRI	GGCC	4 cut(s)	27, 133, 195, 247
BsuTUI	ATCGAT	1 cut(s)	90
BtgI	CCRYGG	1 cut(s)	184
BtsCI	GGATG	2 cut(s)	40, 383
Cac8I	GCNNGC	1 cut(s)	29
Cfr13I	GGNCC	1 cut(s)	245
ClaI	ATCGAT	1 cut(s)	90
Csp6I	GTAC	2 cut(s)	262, 425
CviAII	CATG	5 cut(s)	147, 185, 259, 358, 428
CviJI	RGCY	8 cut(s)	27, 31, 133, 195, 247, 316, 356, 413
CviKI_1	RGCY	8 cut(s)	27, 31, 133, 195, 247, 316, 356, 413
CviQI	GTAC	2 cut(s)	262, 425
DdeI	CTNAG	2 cut(s)	296, 338
DpnI	GATC	2 cut(s)	174, 204
DpnII	GATC	2 cut(s)	172, 202
EaeI	YGGCCR	3 cut(s)	25, 131, 193
Eco105I	TACGTA	1 cut(s)	265
Eco130I	CCWWGG	1 cut(s)	184
EcoRI	GAATTC	1 cut(s)	291
EcoRII	CCWGG	1 cut(s)	458
EcoT14I	CCWWGG	1 cut(s)	184
ErhI	CCWWGG	1 cut(s)	184
FaeI	CATG	5 cut(s)	150, 188, 262, 361, 431
FaiI	YATR	8 cut(s)	24, 148, 186, 224, 260, 311, 359, 429
FalI	AAGNNNNNCTT	2 cut(s)	61, 93
FatI	CATG	5 cut(s)	146, 184, 258, 357, 427
FbaI	TGATCA	1 cut(s)	172
Fnu4HI	GCNGC	2 cut(s)	196, 317
FokI	GGATG	2 cut(s)	47, 390
Fsp4HI	GCNGC	2 cut(s)	196, 317
GluI	GCNGC	2 cut(s)	196, 317
GsuI	CTGGAG	1 cut(s)	191
HaeIII	GGCC	4 cut(s)	27, 133, 195, 247
HapII	CCGG	1 cut(s)	32
Hin1II	CATG	5 cut(s)	150, 188, 262, 361, 431
HinfI	GANTC	3 cut(s)	74, 211, 344
HpaII	CCGG	1 cut(s)	32
HphI	GGTGA	1 cut(s)	283
Hpy188I	TCNGA	3 cut(s)	219, 297, 333
Hpy188III	TCNNGA	3 cut(s)	170, 208, 419
HpyAV	CCTTC	2 cut(s)	104, 275
HpyCH4III	ACNGT	1 cut(s)	409
HpyCH4IV	ACGT	2 cut(s)	264, 423
HpyCH4V	TGCA	4 cut(s)	81, 319, 372, 398
HpyF10VI	GCNNNNNNNGC	1 cut(s)	362
HpyF3I	CTNAG	2 cut(s)	296, 338
HpySE526I	ACGT	2 cut(s)	264, 423
Hsp92II	CATG	5 cut(s)	150, 188, 262, 361, 431
Ksp22I	TGATCA	1 cut(s)	172
Kzo9I	GATC	2 cut(s)	172, 202
LpnPI	CCDG	8 cut(s)	41, 45, 183, 221, 261, 404, 432, 445
Lsp1109I	GCAGC	1 cut(s)	303
LweI	GCATC	1 cut(s)	328
MaeII	ACGT	2 cut(s)	264, 423
MalI	GATC	2 cut(s)	174, 204
MboI	GATC	2 cut(s)	172, 202
MboII	GAAGA	5 cut(s)	53, 166, 169, 286, 313
MlsI	TGGCCA	2 cut(s)	27, 133
MluCI	AATT	3 cut(s)	138, 253, 291
MluNI	TGGCCA	2 cut(s)	27, 133
MlyI	GAGTC	2 cut(s)	68, 338
MnlI	CCTC	4 cut(s)	31, 144, 291, 382
Mox20I	TGGCCA	2 cut(s)	27, 133
MscI	TGGCCA	2 cut(s)	27, 133
MseI	TTAA	1 cut(s)	141
MslI	CAYNNNNRTG	1 cut(s)	189
Msp20I	TGGCCA	2 cut(s)	27, 133
MspI	CCGG	1 cut(s)	32
MspR9I	CCNGG	1 cut(s)	460
MvaI	CCWGG	1 cut(s)	460
MwoI	GCNNNNNNNGC	1 cut(s)	362
NcoI	CCATGG	1 cut(s)	184
NdeII	GATC	2 cut(s)	172, 202
NlaIII	CATG	5 cut(s)	150, 188, 262, 361, 431
PfeI	GAWTC	1 cut(s)	211
PkrI	GCNGC	2 cut(s)	197, 318
PleI	GAGTC	2 cut(s)	68, 338
PpsI	GAGTC	2 cut(s)	68, 338
Ppu21I	YACGTR	1 cut(s)	265
Psp6I	CCWGG	1 cut(s)	458
PspGI	CCWGG	1 cut(s)	458
PspPI	GGNCC	1 cut(s)	245
PstI	CTGCAG	1 cut(s)	400
RsaI	GTAC	2 cut(s)	263, 426
RsaNI	GTAC	2 cut(s)	262, 425
RseI	CAYNNNNRTG	1 cut(s)	189
SaqAI	TTAA	1 cut(s)	141
SatI	GCNGC	2 cut(s)	196, 317
Sau3AI	GATC	2 cut(s)	172, 202
Sau96I	GGNCC	1 cut(s)	245
SchI	GAGTC	2 cut(s)	68, 338
ScrFI	CCNGG	1 cut(s)	460
SetI	ASST	4 cut(s)	267, 273, 318, 426
SfaNI	GCATC	1 cut(s)	328
SfcI	CTRYAG	1 cut(s)	396
SmiMI	CAYNNNNRTG	1 cut(s)	189
SnaBI	TACGTA	1 cut(s)	265
Sse9I	AATT	3 cut(s)	138, 253, 291
SsiI	CCGC	1 cut(s)	196
StyD4I	CCNGG	1 cut(s)	458
StyI	CCWWGG	1 cut(s)	184
TaaI	ACNGT	1 cut(s)	409
TaiI	ACGT	2 cut(s)	267, 426
TaqI	TCGA	1 cut(s)	90
TasI	AATT	3 cut(s)	138, 253, 291
TauI	GCSGC	1 cut(s)	198
TfiI	GAWTC	1 cut(s)	211
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
TseI	GCWGC	1 cut(s)	316
XapI	RAATTY	2 cut(s)	253, 291
XcmI	CCANNNNNNNNNTGG	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.