Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008385.1

Orthogroup ID

OG0003240

Physical Location & Seq

Genomic Coordinates Forward (+)

14643 .. 16661

Gene Structure 2019 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008385.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

atggagcttcagctgggtctcgctcttccaaccaataacaattttcccgtcaaaggcggcctcgacttgaacattaacgactttctctgccaccctactattagtgacggcagcagcaacaagaacaagaagcgtagtttcacccaagcttttgagcccagcaatgcctcagcagccgtgcctcgaacgctgccttggttgctttggaacaaccaaccaaacaacgacgacgacgaagatgacaccaaacacagttctcgttacaccattatgatcaaaaatgaggaagatcgactggtgggttggccgcccattaagtcatggaagaaggagacttgctttcacatccacggcgacggcggtggccgtcgtcatcggacagtggggattaatggcggaaactctacatttgtgaagattcagacaattataaactcacttatcaagacagggaaggagactggcttcttgctcatgatcaagacataccttggagaactttcgtgcggtctgtgcaacgactcaaattgcttaaaaggggaaactagtggaggattagaggactattttgggggagaagagggtgaacgtcgcacggaatttgtacctgaagagtctgctatcaggattgatgacatcaaggtcgataaggagagcattgacatgctttctgctcttggcatgtctgaaattcctggggtatcagaagttgagctgcaggttgtggttcctagccaaggatatggacgggatccacaaggaaggaggttctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0016020 GO:0031090 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

ko00510 ko01100 ko04075 map00510 map01100 map04075

Pfam Domains

Protein Families

Glyco_transf_17

Protein Analysis

257

Amino Acids

28.48

Weight (kDa)

5.25

Isoelectric Point (pI)

49.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003240)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32280 AT4G32280 AT4G32280
fragaria_vesca	FvH4_1g02700 FvH4_2g28970
malus_domestica	MD02G1027600.v1.1 MD08G1151300.v1.1 MD15G1169100.v1.1
prunus_persica	Prupe.1G481700_v2.0.a1 Prupe.1G481700_v2.0.a1 Prupe.1G481700_v2.0.a1 Prupe.7G247500_v2.0.a1
pyrus_communis	pycom02g02260 pycom08g12740 pycom15g15080
rosa_chinensis	RchiOBHm_Chr2g0087791 RchiOBHm_Chr6g0297821
rosa_laevigata	RLG00000011558 RLG00000015900
rosa_multiflora	Rmu_co8358427.1_g000001 Rmu_sc0003137.1_g000004 Rmu_sc0008385.1_g000003
rosa_roxburghii	Rroxscaffold_2G00153220 Rroxscaffold_7G00170170 Rroxscaffold_7G00179020
rosa_rugosa	Rorug01G0478700 Rorug06G0275700
rosa_samantha	Rh2AG033100 Rh2BG032200 Rh2CG032900 Rh2DG032700 Rh6AG386400 Rh6BG395000 Rh6CG400700 Rh6DG387100
rosa_wichuraiana	Rw2G002580 Rw6G033680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	431
AasI	GACNNNNNNGTC	1 cut(s)	641
Acc36I	ACCTGC	1 cut(s)	709
AciI	CCGC	5 cut(s)	57, 308, 360, 396, 507
AclWI	GGATC	2 cut(s)	746, 759
AcoI	YGGCCR	2 cut(s)	305, 364
AcsI	RAATTY	2 cut(s)	599, 690
AcuI	CTGAAG	1 cut(s)	630
AfaI	GTAC	1 cut(s)	606
AfiI	CCNNNNNNNGG	2 cut(s)	53, 737
AgsI	TTSAA	1 cut(s)	70
AhlI	ACTAGT	1 cut(s)	545
AjnI	CCWGG	1 cut(s)	694
AjuI	GAANNNNNNNTTGG	2 cut(s)	178, 210
AluBI	AGCT	4 cut(s)	7, 13, 149, 715
AluI	AGCT	4 cut(s)	7, 13, 149, 715
Alw26I	GTCTC	3 cut(s)	23, 326, 452
AlwI	GGATC	2 cut(s)	746, 759
AoxI	GGCC	3 cut(s)	58, 305, 364
ApeKI	GCWGC	5 cut(s)	111, 114, 173, 190, 715
ApoI	RAATTY	2 cut(s)	599, 690
AseI	ATTAAT	1 cut(s)	390
AsuHPI	GGTGA	2 cut(s)	133, 596
BamHI	GGATCC	1 cut(s)	751
BanII	GRGCYC	1 cut(s)	159
BbvCI	CCTCAGC	1 cut(s)	169
BbvI	GCAGC	5 cut(s)	123, 126, 177, 185, 702
BceAI	ACGGC	5 cut(s)	124, 161, 351, 367, 373
BciT130I	CCWGG	1 cut(s)	696
BclI	TGATCA	2 cut(s)	273, 477
BcoDI	GTCTC	3 cut(s)	23, 326, 452
BcuI	ACTAGT	1 cut(s)	545
BfaI	CTAG	2 cut(s)	546, 732
BfmI	CTRYAG	1 cut(s)	716
BfuAI	ACCTGC	1 cut(s)	709
BisI	GCNGC	7 cut(s)	58, 112, 115, 174, 191, 308, 716
BlsI	GCNGC	7 cut(s)	59, 113, 116, 175, 192, 309, 717
Bme1390I	CCNGG	1 cut(s)	696
BmiI	GGNNCC	2 cut(s)	729, 753
BmrFI	CCNGG	1 cut(s)	696
Bpu10I	CCTNAGC	1 cut(s)	169
BsaI	GGTCTC	1 cut(s)	23
BsaJI	CCNNGG	5 cut(s)	194, 349, 490, 695, 736
Bsc4I	CCNNNNNNNGG	2 cut(s)	53, 737
Bse1I	ACTGG	2 cut(s)	300, 466
Bse3DI	GCAATG	1 cut(s)	169
BseBI	CCWGG	1 cut(s)	696
BseDI	CCNNGG	5 cut(s)	194, 349, 490, 695, 736
BseGI	GGATG	1 cut(s)	345
BseLI	CCNNNNNNNGG	2 cut(s)	53, 737
BseMI	GCAATG	1 cut(s)	169
BseMII	CTCAG	1 cut(s)	183
BseNI	ACTGG	2 cut(s)	300, 466
BseXI	GCAGC	5 cut(s)	123, 126, 177, 185, 702
BseYI	CCCAGC	2 cut(s)	13, 158
BshFI	GGCC	3 cut(s)	60, 307, 366
BslI	CCNNNNNNNGG	2 cut(s)	53, 737
BsmAI	GTCTC	3 cut(s)	23, 326, 452
BsnI	GGCC	3 cut(s)	60, 307, 366
Bso31I	GGTCTC	1 cut(s)	23
Bsp1286I	GDGCHC	1 cut(s)	159
Bsp143I	GATC	4 cut(s)	273, 289, 477, 751
BspACI	CCGC	5 cut(s)	57, 308, 360, 396, 507
BspANI	GGCC	3 cut(s)	60, 307, 366
BspCNI	CTCAG	1 cut(s)	182
BspHI	TCATGA	1 cut(s)	474
BspLI	GGNNCC	2 cut(s)	729, 753
BspMAI	CTGCAG	1 cut(s)	720
BspMI	ACCTGC	1 cut(s)	709
BspPI	GGATC	2 cut(s)	746, 759
BspQI	GCTCTTC	1 cut(s)	30
BspTNI	GGTCTC	1 cut(s)	23
BsrDI	GCAATG	1 cut(s)	169
BsrI	ACTGG	2 cut(s)	300, 466
BssECI	CCNNGG	5 cut(s)	194, 349, 490, 695, 736
BssMI	GATC	4 cut(s)	273, 289, 477, 751
BssT1I	CCWWGG	3 cut(s)	194, 490, 736
Bst2UI	CCWGG	1 cut(s)	696
Bst4CI	ACNGT	2 cut(s)	254, 382
Bst6I	CTCTTC	3 cut(s)	30, 573, 606
BstDEI	CTNAG	1 cut(s)	169
BstDSI	CCRYGG	1 cut(s)	349
BstENI	CCTNNNNNAGG	1 cut(s)	735
BstF5I	GGATG	1 cut(s)	345
BstKTI	GATC	4 cut(s)	276, 292, 480, 754
BstMAI	GTCTC	3 cut(s)	23, 326, 452
BstMBI	GATC	4 cut(s)	273, 289, 477, 751
BstMWI	GCNNNNNNNGC	4 cut(s)	173, 187, 199, 513
BstNI	CCWGG	1 cut(s)	696
BstNSI	RCATGY	2 cut(s)	667, 685
BstSCI	CCNGG	1 cut(s)	694
BstSFI	CTRYAG	1 cut(s)	716
BstV1I	GCAGC	5 cut(s)	123, 126, 177, 185, 702
BstX2I	RGATCY	1 cut(s)	751
BstXI	CCANNNNNNTGG	1 cut(s)	743
BstYI	RGATCY	1 cut(s)	751
BsuRI	GGCC	3 cut(s)	60, 307, 366
BtgI	CCRYGG	1 cut(s)	349
BtsCI	GGATG	1 cut(s)	345
BtsIMutI	CAGTG	1 cut(s)	387
BveI	ACCTGC	1 cut(s)	709
CciI	TCATGA	1 cut(s)	474
Csp6I	GTAC	1 cut(s)	605
CviAII	CATG	4 cut(s)	321, 475, 664, 682
CviQI	GTAC	1 cut(s)	605
DdeI	CTNAG	1 cut(s)	169
DpnI	GATC	4 cut(s)	275, 291, 479, 753
DpnII	GATC	4 cut(s)	273, 289, 477, 751
DrdI	GACNNNNNNGTC	1 cut(s)	641
DseDI	GACNNNNNNGTC	1 cut(s)	641
EaeI	YGGCCR	2 cut(s)	305, 364
Eam1104I	CTCTTC	3 cut(s)	30, 573, 606
EarI	CTCTTC	3 cut(s)	30, 573, 606
EciI	GGCGGA	1 cut(s)	411
Eco130I	CCWWGG	3 cut(s)	194, 490, 736
Eco24I	GRGCYC	1 cut(s)	159
Eco31I	GGTCTC	1 cut(s)	23
Eco57I	CTGAAG	1 cut(s)	630
EcoNI	CCTNNNNNAGG	1 cut(s)	735
EcoRII	CCWGG	1 cut(s)	694
EcoT14I	CCWWGG	3 cut(s)	194, 490, 736
EcoT38I	GRGCYC	1 cut(s)	159
ErhI	CCWWGG	3 cut(s)	194, 490, 736
FaeI	CATG	4 cut(s)	324, 478, 667, 685
FaiI	YATR	8 cut(s)	272, 322, 431, 476, 487, 665, 683, 744
FatI	CATG	4 cut(s)	320, 474, 663, 681
FbaI	TGATCA	2 cut(s)	273, 477
Fnu4HI	GCNGC	7 cut(s)	58, 112, 115, 174, 191, 308, 716
FokI	GGATG	1 cut(s)	332
FriOI	GRGCYC	1 cut(s)	159
Fsp4HI	GCNGC	7 cut(s)	58, 112, 115, 174, 191, 308, 716
FspBI	CTAG	2 cut(s)	546, 732
GluI	GCNGC	7 cut(s)	58, 112, 115, 174, 191, 308, 716
GsaI	CCCAGC	2 cut(s)	17, 162
HaeIII	GGCC	3 cut(s)	60, 307, 366
Hin1II	CATG	4 cut(s)	324, 478, 667, 685
HindIII	AAGCTT	1 cut(s)	147
HinfI	GANTC	3 cut(s)	418, 521, 614
HphI	GGTGA	2 cut(s)	133, 596
Hpy166II	GTNNAC	1 cut(s)	587
Hpy188I	TCNGA	4 cut(s)	378, 423, 688, 706
Hpy188III	TCNNGA	4 cut(s)	445, 475, 481, 625
Hpy8I	GTNNAC	1 cut(s)	587
Hpy99I	CGWCG	6 cut(s)	230, 233, 236, 359, 372, 594
HpyAV	CCTTC	3 cut(s)	322, 448, 756
HpyCH4III	ACNGT	2 cut(s)	254, 382
HpyCH4IV	ACGT	1 cut(s)	589
HpyCH4V	TGCA	2 cut(s)	516, 718
HpyF10VI	GCNNNNNNNGC	4 cut(s)	173, 187, 199, 513
HpyF3I	CTNAG	1 cut(s)	169
HpySE526I	ACGT	1 cut(s)	589
Hsp92II	CATG	4 cut(s)	324, 478, 667, 685
Ksp22I	TGATCA	2 cut(s)	273, 477
Kzo9I	GATC	4 cut(s)	273, 289, 477, 751
LguI	GCTCTTC	1 cut(s)	30
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	9 cut(s)	172, 281, 435, 447, 610, 621, 681, 704, 708
Lsp1109I	GCAGC	5 cut(s)	123, 126, 177, 185, 702
MaeI	CTAG	2 cut(s)	546, 732
MaeII	ACGT	1 cut(s)	589
MaeIII	GTNAC	2 cut(s)	104, 260
MalI	GATC	4 cut(s)	275, 291, 479, 753
MboI	GATC	4 cut(s)	273, 289, 477, 751
MboII	GAAGA	7 cut(s)	17, 248, 299, 337, 427, 590, 623
MflI	RGATCY	1 cut(s)	751
MhlI	GDGCHC	1 cut(s)	159
MluCI	AATT	5 cut(s)	40, 426, 526, 599, 690
MlyI	GAGTC	2 cut(s)	515, 623
MmeI	TCCRAC	1 cut(s)	53
MnlI	CCTC	8 cut(s)	71, 178, 192, 277, 545, 553, 574, 759
MseI	TTAA	4 cut(s)	75, 315, 390, 533
MslI	CAYNNNNRTG	2 cut(s)	269, 662
MspA1I	CMGCKG	1 cut(s)	13
MspR9I	CCNGG	1 cut(s)	696
MvaI	CCWGG	1 cut(s)	696
MwoI	GCNNNNNNNGC	4 cut(s)	173, 187, 199, 513
NdeII	GATC	4 cut(s)	273, 289, 477, 751
NlaIII	CATG	4 cut(s)	324, 478, 667, 685
NlaIV	GGNNCC	2 cut(s)	729, 753
NmuCI	GTSAC	1 cut(s)	104
NspI	RCATGY	2 cut(s)	667, 685
PagI	TCATGA	1 cut(s)	474
PciSI	GCTCTTC	1 cut(s)	30
PcsI	WCGNNNNNNNCGW	1 cut(s)	231
PfeI	GAWTC	1 cut(s)	418
PkrI	GCNGC	7 cut(s)	59, 113, 116, 175, 192, 309, 717
PleI	GAGTC	2 cut(s)	515, 622
PpsI	GAGTC	2 cut(s)	515, 622
PshBI	ATTAAT	1 cut(s)	390
PsiI	TTATAA	1 cut(s)	431
Psp6I	CCWGG	1 cut(s)	694
PspFI	CCCAGC	2 cut(s)	13, 158
PspGI	CCWGG	1 cut(s)	694
PspN4I	GGNNCC	2 cut(s)	729, 753
PstI	CTGCAG	1 cut(s)	720
PsuI	RGATCY	1 cut(s)	751
PvuII	CAGCTG	1 cut(s)	13
RsaI	GTAC	1 cut(s)	606
RsaNI	GTAC	1 cut(s)	605
RseI	CAYNNNNRTG	2 cut(s)	269, 662
SapI	GCTCTTC	1 cut(s)	30
SaqAI	TTAA	4 cut(s)	75, 315, 390, 533
SatI	GCNGC	7 cut(s)	58, 112, 115, 174, 191, 308, 716
Sau3AI	GATC	4 cut(s)	273, 289, 477, 751
SchI	GAGTC	2 cut(s)	515, 623
ScrFI	CCNGG	1 cut(s)	696
SduI	GDGCHC	1 cut(s)	159
SfcI	CTRYAG	1 cut(s)	716
SmiMI	CAYNNNNRTG	2 cut(s)	269, 662
SpeI	ACTAGT	1 cut(s)	545
Sse9I	AATT	5 cut(s)	40, 426, 526, 599, 690
SsiI	CCGC	5 cut(s)	57, 308, 360, 396, 507
SspMI	CTAG	2 cut(s)	546, 732
StyD4I	CCNGG	1 cut(s)	694
StyI	CCWWGG	3 cut(s)	194, 490, 736
TaaI	ACNGT	2 cut(s)	254, 382
TaiI	ACGT	1 cut(s)	592
TaqI	TCGA	4 cut(s)	63, 184, 292, 645
TasI	AATT	5 cut(s)	40, 426, 526, 599, 690
TauI	GCSGC	2 cut(s)	60, 310
TfiI	GAWTC	1 cut(s)	418
Tru1I	TTAA	4 cut(s)	75, 315, 390, 533
Tru9I	TTAA	4 cut(s)	75, 315, 390, 533
TscAI	CASTG	1 cut(s)	387
TseFI	GTSAC	1 cut(s)	104
TseI	GCWGC	5 cut(s)	111, 114, 173, 190, 715
Tsp45I	GTSAC	1 cut(s)	104
TspGWI	ACGGA	1 cut(s)	611
TspRI	CASTG	1 cut(s)	387
VspI	ATTAAT	1 cut(s)	390
XagI	CCTNNNNNAGG	1 cut(s)	735
XapI	RAATTY	2 cut(s)	599, 690
XceI	RCATGY	2 cut(s)	667, 685
XspI	CTAG	2 cut(s)	546, 732

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.