AT4G38280

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0000902
Physical Location & Seq
Forward (+)
17941796 .. 17943363
1568 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G38280.1

Sequence Viewer

Length: 513 bp
ATGGAGATTCCGGAGGGGACATCAAAAGATTCAGAAAAGGCCAACGAACAAGATTCAGTGTCATCAATTGGGGCAAAGAAACCTCCACTGGAATCTCCAGCCACTACTAATGCTGCAAGCGGTCGACTTGTTTATGTCCGGAGAAGAGTGGAGGTTGACACATCCAAAGCAGCTGCTAGCACTACTAATCCGAACCCGCCTCCTACTAAGGCACCACTTCAAATACCTTCATCACCCGCACAGGAACCAACCCCTACCAGCCATAAGTTAGACTGGGAAGAGCGTTACCTTCATCTTCAAATGCTTCTTAACAAGCTTAATCAATCTGATCGGACCGATCATGTTCAGATGCTTTGGTCACTTTCCTCCGCCGAGCTTAGCAAGCATGCTGTTGACTTGGAAAAGAGGTCTATTCAGTTCTCTCTCGAGGAAGCGAGAGAGATGCAGCGCGTAGCAGCTTTAAACATGTTAGGAAGGTCTGTGAATAGTCTAAAATCTACATCAAATGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LIN52

Protein Analysis

170

Amino Acids

18.77

Weight (kDa)

6.44

Isoelectric Point (pI)

55.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 211
AccI GTMKAC 1 cut(s) 124
AccII CGCG 1 cut(s) 450
AccIII TCCGGA 2 cut(s) 10, 138
AciI CCGC 4 cut(s) 120, 197, 237, 369
AflIII ACRYGT 1 cut(s) 465
AgsI TTSAA 2 cut(s) 221, 299
AluBI AGCT 4 cut(s) 173, 316, 376, 458
AluI AGCT 4 cut(s) 173, 316, 376, 458
Ama87I CYCGRG 1 cut(s) 425
Aor13HI TCCGGA 2 cut(s) 10, 138
AoxI GGCC 1 cut(s) 39
ApeKI GCWGC 5 cut(s) 113, 170, 173, 445, 455
AspLEI GCGC 1 cut(s) 450
AspS9I GGNCC 1 cut(s) 333
AsuHPI GGTGA 1 cut(s) 225
AsuNHI GCTAGC 1 cut(s) 176
AvaI CYCGRG 1 cut(s) 425
AvaII GGWCC 1 cut(s) 333
BanI GGYRCC 1 cut(s) 211
BbvI GCAGC 5 cut(s) 100, 160, 182, 457, 467
BcgI CGANNNNNNTGC 2 cut(s) 424, 458
BfaI CTAG 1 cut(s) 177
BisI GCNGC 5 cut(s) 114, 171, 174, 446, 456
BlpI GCTNAGC 1 cut(s) 377
BlsI GCNGC 5 cut(s) 115, 172, 175, 447, 457
Bme18I GGWCC 1 cut(s) 333
BmeT110I CYCGRG 1 cut(s) 425
BmgT120I GGNCC 1 cut(s) 333
BmiI GGNNCC 2 cut(s) 213, 246
BmrI ACTGGG 1 cut(s) 283
BmsI GCATC 2 cut(s) 339, 432
BmtI GCTAGC 1 cut(s) 180
BmuI ACTGGG 1 cut(s) 283
BpmI CTGGAG 1 cut(s) 81
Bpu1102I GCTNAGC 1 cut(s) 377
BsaWI WCCGGW 2 cut(s) 10, 138
Bse1I ACTGG 2 cut(s) 93, 278
BseAI TCCGGA 2 cut(s) 10, 138
BseGI GGATG 1 cut(s) 161
BseNI ACTGG 2 cut(s) 93, 278
BseXI GCAGC 5 cut(s) 100, 160, 182, 457, 467
Bsh1236I CGCG 1 cut(s) 450
Bsh1285I CGRYCG 1 cut(s) 124
BshFI GGCC 1 cut(s) 41
BshNI GGYRCC 1 cut(s) 211
BsiEI CGRYCG 1 cut(s) 124
BsiHKCI CYCGRG 1 cut(s) 425
BsiSI CCGG 2 cut(s) 11, 139
BslFI GGGAC 1 cut(s) 31
BsmFI GGGAC 1 cut(s) 31
BsnI GGCC 1 cut(s) 41
BsoBI CYCGRG 1 cut(s) 425
Bsp13I TCCGGA 2 cut(s) 10, 138
Bsp143I GATC 2 cut(s) 328, 337
Bsp1720I GCTNAGC 1 cut(s) 377
BspACI CCGC 4 cut(s) 120, 197, 237, 369
BspANI GGCC 1 cut(s) 41
BspEI TCCGGA 2 cut(s) 10, 138
BspFNI CGCG 1 cut(s) 450
BspLI GGNNCC 2 cut(s) 213, 246
BspOI GCTAGC 1 cut(s) 180
BspQI GCTCTTC 1 cut(s) 273
BspT107I GGYRCC 1 cut(s) 211
BsrI ACTGG 2 cut(s) 93, 278
BssMI GATC 2 cut(s) 328, 337
Bst6I CTCTTC 2 cut(s) 139, 273
BstC8I GCNNGC 4 cut(s) 118, 178, 383, 387
BstDEI CTNAG 2 cut(s) 207, 377
BstF5I GGATG 1 cut(s) 161
BstFNI CGCG 1 cut(s) 450
BstHHI GCGC 1 cut(s) 450
BstKTI GATC 2 cut(s) 331, 340
BstMBI GATC 2 cut(s) 328, 337
BstMCI CGRYCG 1 cut(s) 124
BstMWI GCNNNNNNNGC 1 cut(s) 382
BstNSI RCATGY 2 cut(s) 389, 469
BstUI CGCG 1 cut(s) 450
BstV1I GCAGC 5 cut(s) 100, 160, 182, 457, 467
BsuRI GGCC 1 cut(s) 41
BtsCI GGATG 1 cut(s) 161
BtsIMutI CAGTG 2 cut(s) 63, 86
Cac8I GCNNGC 4 cut(s) 118, 178, 383, 387
CfoI GCGC 1 cut(s) 450
Cfr13I GGNCC 1 cut(s) 333
CpoI CGGWCCG 1 cut(s) 333
CspI CGGWCCG 1 cut(s) 333
CviAII CATG 3 cut(s) 341, 386, 466
CviJI RGCY 7 cut(s) 41, 101, 173, 261, 316, 376, 458
CviKI_1 RGCY 7 cut(s) 41, 101, 173, 261, 316, 376, 458
DdeI CTNAG 2 cut(s) 207, 377
DpnI GATC 2 cut(s) 330, 339
DpnII GATC 2 cut(s) 328, 337
DraI TTTAAA 1 cut(s) 462
Eam1104I CTCTTC 2 cut(s) 139, 273
EarI CTCTTC 2 cut(s) 139, 273
EciI GGCGGA 1 cut(s) 358
Eco47I GGWCC 1 cut(s) 333
Eco88I CYCGRG 1 cut(s) 425
FaeI CATG 3 cut(s) 344, 389, 469
FaiI YATR 5 cut(s) 135, 264, 342, 387, 467
FaqI GGGAC 1 cut(s) 31
FatI CATG 3 cut(s) 340, 385, 465
FauI CCCGC 2 cut(s) 204, 244
FblI GTMKAC 1 cut(s) 124
Fnu4HI GCNGC 5 cut(s) 114, 171, 174, 446, 456
FokI GGATG 1 cut(s) 148
Fsp4HI GCNGC 5 cut(s) 114, 171, 174, 446, 456
FspBI CTAG 1 cut(s) 177
GlaI GCGC 1 cut(s) 449
GluI GCNGC 5 cut(s) 114, 171, 174, 446, 456
GsuI CTGGAG 1 cut(s) 81
HaeIII GGCC 1 cut(s) 41
HapII CCGG 2 cut(s) 11, 139
HhaI GCGC 1 cut(s) 450
Hin1II CATG 3 cut(s) 344, 389, 469
Hin6I GCGC 1 cut(s) 448
HinP1I GCGC 1 cut(s) 448
HincII GTYRAC 3 cut(s) 125, 157, 394
HindII GTYRAC 3 cut(s) 125, 157, 394
HindIII AAGCTT 1 cut(s) 314
HinfI GANTC 4 cut(s) 7, 29, 53, 92
HpaII CCGG 2 cut(s) 11, 139
HphI GGTGA 1 cut(s) 225
Hpy166II GTNNAC 3 cut(s) 125, 157, 394
Hpy188I TCNGA 5 cut(s) 34, 192, 328, 333, 348
Hpy188III TCNNGA 3 cut(s) 11, 139, 425
Hpy8I GTNNAC 3 cut(s) 125, 157, 394
HpyAV CCTTC 3 cut(s) 237, 299, 468
HpyCH4V TGCA 2 cut(s) 116, 445
HpyF10VI GCNNNNNNNGC 1 cut(s) 382
HpyF3I CTNAG 2 cut(s) 207, 377
Hsp92II CATG 3 cut(s) 344, 389, 469
HspAI GCGC 1 cut(s) 448
Kpn2I TCCGGA 2 cut(s) 10, 138
Kzo9I GATC 2 cut(s) 328, 337
LguI GCTCTTC 1 cut(s) 273
LpnPI CCDG 7 cut(s) 24, 74, 111, 152, 227, 259, 271
Lsp1109I GCAGC 5 cut(s) 100, 160, 182, 457, 467
LweI GCATC 2 cut(s) 339, 432
MaeI CTAG 1 cut(s) 177
MaeIII GTNAC 2 cut(s) 284, 357
MalI GATC 2 cut(s) 330, 339
MboI GATC 2 cut(s) 328, 337
MboII GAAGA 3 cut(s) 156, 287, 290
MfeI CAATTG 1 cut(s) 66
MluCI AATT 1 cut(s) 66
MnlI CCTC 7 cut(s) 7, 93, 145, 210, 376, 399, 421
MroI TCCGGA 2 cut(s) 10, 138
MseI TTAA 3 cut(s) 309, 318, 461
MspA1I CMGCKG 1 cut(s) 173
MspI CCGG 2 cut(s) 11, 139
MunI CAATTG 1 cut(s) 66
MvnI CGCG 1 cut(s) 450
MwoI GCNNNNNNNGC 1 cut(s) 382
NdeII GATC 2 cut(s) 328, 337
NheI GCTAGC 1 cut(s) 176
NlaIII CATG 3 cut(s) 344, 389, 469
NlaIV GGNNCC 2 cut(s) 213, 246
NmeAIII GCCGAG 1 cut(s) 397
NmuCI GTSAC 1 cut(s) 357
NspI RCATGY 2 cut(s) 389, 469
PaeI GCATGC 1 cut(s) 389
PaeR7I CTCGAG 1 cut(s) 425
PciI ACATGT 1 cut(s) 465
PciSI GCTCTTC 1 cut(s) 273
PfeI GAWTC 4 cut(s) 7, 29, 53, 92
PkrI GCNGC 5 cut(s) 115, 172, 175, 447, 457
PscI ACATGT 1 cut(s) 465
PspN4I GGNNCC 2 cut(s) 213, 246
PspPI GGNCC 1 cut(s) 333
PvuII CAGCTG 1 cut(s) 173
Rsr2I CGGWCCG 1 cut(s) 333
RsrII CGGWCCG 1 cut(s) 333
SalI GTCGAC 1 cut(s) 123
SapI GCTCTTC 1 cut(s) 273
SaqAI TTAA 3 cut(s) 309, 318, 461
SatI GCNGC 5 cut(s) 114, 171, 174, 446, 456
Sau3AI GATC 2 cut(s) 328, 337
Sau96I GGNCC 1 cut(s) 333
SfaNI GCATC 2 cut(s) 339, 432
Sfr274I CTCGAG 1 cut(s) 425
SinI GGWCC 1 cut(s) 333
SlaI CTCGAG 1 cut(s) 425
SmlI CTYRAG 1 cut(s) 425
SmoI CTYRAG 1 cut(s) 425
SphI GCATGC 1 cut(s) 389
Sse9I AATT 1 cut(s) 66
SsiI CCGC 4 cut(s) 120, 197, 237, 369
SspMI CTAG 1 cut(s) 177
TaqI TCGA 2 cut(s) 124, 426
TaqII GACCGA 1 cut(s) 350
TasI AATT 1 cut(s) 66
TfiI GAWTC 4 cut(s) 7, 29, 53, 92
Tru1I TTAA 3 cut(s) 309, 318, 461
Tru9I TTAA 3 cut(s) 309, 318, 461
TscAI CASTG 2 cut(s) 63, 93
TseFI GTSAC 1 cut(s) 357
TseI GCWGC 5 cut(s) 113, 170, 173, 445, 455
Tsp45I GTSAC 1 cut(s) 357
TspDTI ATGAA 2 cut(s) 219, 281
TspRI CASTG 2 cut(s) 63, 93
VpaK11BI GGWCC 1 cut(s) 333
XceI RCATGY 2 cut(s) 389, 469
XhoI CTCGAG 1 cut(s) 425
XmiI GTMKAC 1 cut(s) 124
XspI CTAG 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.