Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000902

Physical Location & Seq

Genomic Coordinates Forward (+)

16732078 .. 16734971

Gene Structure 2894 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g25250.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGTGAACTCTAGCATTGACAACAGTGCTGTCGGATGGCAGGTTGGGGATCTTATTAAGGTTTCTGGAAGTAAGGTAGTCACTCCTGAGCGTCCTCGGAGCTCCCCTTGCCACCAGTTCTCAAACATCAGTGGTTCAAGTGAGCAAGGACTAGGCAAGAGAAGAATTCAAGACGTGACAGAACAAAGTTCTGATTGTCTCAATTCCAAACGACATTTACAGAAGGAGGCAGGTATACCTGATAAAAGAACCAAGAATCAGGAGAATGAGAGTCCTTCTGCACCTTCATTTGCACCAACTCTTTTAACTTCTCCCGTTAGCTTTTCACCTGGTAAACCACCAGGTTCACTTTTTCTTGGAAAGTCTAATAATGTGTCACCAGGTGCACATTCCAGGCACCTTAAATTTACTCCTGATCGTATGGTTTCTAACTTGGTGGATTCGAAGAGGAGCAATGATGAGAATAGGACAGAGCGGTTTCTATGTCTGCAGAATCTCCTGAAGCTCATCAATGAGTCTAACCAGAGTGAATACATCCAGATGCTTCGTTGTTTATCTTCATCTGAGCTTAACAGACATGCTGTTGAGCTAGAGAAACGATCAATGCTGCTTTCGGTTGAGGAAGCAAAAGAGATCCAAAGGATGAAGGTTCTAAATATTTTTGGCAAGTCCTCAATGACAAGCAATTACAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIN52

Protein Analysis

232

Amino Acids

25.67

Weight (kDa)

9.43

Isoelectric Point (pI)

67.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000902)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38280
fragaria_vesca	FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_5g25250 FvH4_5g25250 FvH4_5g25250 FvH4_5g25250 FvH4_5g25250 FvH4_5g25250 FvH4_5g25250
malus_domestica	MD05G1134400.v1.1 MD06G1009100.v1.1 MD10G1139500.v1.1
prunus_persica	Prupe.5G011500_v2.0.a1 Prupe.8G178200_v2.0.a1 Prupe.8G178200_v2.0.a1 Prupe.8G178200_v2.0.a1 Prupe.8G178200_v2.0.a1 Prupe.8G178200_v2.0.a1 Prupe.8G178200_v2.0.a1
pyrus_communis	pycom05g13100 pycom06g00760 pycom10g11850
rosa_chinensis	RchiOBHm_Chr6g0280681 RchiOBHm_Chr7g0215391
rosa_laevigata	RLG00000002666 RLG00000013036
rosa_multiflora	Rmu_sc0000355.1_g000008 Rmu_sc0000976.1_g000009
rosa_roxburghii	Rroxscaffold_3G00244230 Rroxscaffold_7G00187760
rosa_rugosa	Rorug06G0133800 Rorug06G0133800 Rorug06G0133800 Rorug06G0133800 Rorug07G0152800 Rorug07G0152900 Rorug07G0153000 Rorug07G0153100
rosa_samantha	Rh6AG246400 Rh6BG248600 Rh6CG249900 Rh6DG241300 Rh7AG289600 Rh7BG281500 Rh7CG309200 Rh7DG293100
rosa_wichuraiana	Rw6G021320 Rw7G024740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	31, 221
AccB1I	GGYRCC	1 cut(s)	396
AccBSI	CCGCTC	1 cut(s)	475
AccI	GTMKAC	1 cut(s)	235
AciI	CCGC	1 cut(s)	475
AclWI	GGATC	2 cut(s)	57, 628
AcsI	RAATTY	2 cut(s)	165, 404
AcuI	CTGAAG	1 cut(s)	521
AdeI	CACNNNGTG	1 cut(s)	383
AgsI	TTSAA	2 cut(s)	138, 170
AjiI	CACGTC	1 cut(s)	175
AjnI	CCWGG	4 cut(s)	328, 340, 379, 392
AluBI	AGCT	5 cut(s)	102, 321, 505, 568, 589
AluI	AGCT	5 cut(s)	102, 321, 505, 568, 589
Alw21I	GWGCWC	2 cut(s)	104, 388
Alw26I	GTCTC	1 cut(s)	203
Alw44I	GTGCAC	1 cut(s)	384
AlwI	GGATC	2 cut(s)	57, 628
ApaLI	GTGCAC	1 cut(s)	384
ApeKI	GCWGC	1 cut(s)	607
ApoI	RAATTY	2 cut(s)	165, 404
AsuHPI	GGTGA	3 cut(s)	16, 318, 369
AsuII	TTCGAA	1 cut(s)	443
BaeGI	GKGCMC	1 cut(s)	388
BanI	GGYRCC	1 cut(s)	396
BanII	GRGCYC	1 cut(s)	104
Bbv12I	GWGCWC	2 cut(s)	104, 388
BbvI	GCAGC	1 cut(s)	594
BccI	CCATC	1 cut(s)	30
BciT130I	CCWGG	4 cut(s)	330, 342, 381, 394
BcoDI	GTCTC	1 cut(s)	203
BfaI	CTAG	3 cut(s)	12, 152, 590
BfmI	CTRYAG	1 cut(s)	488
BfuAI	ACCTGC	2 cut(s)	31, 221
BisI	GCNGC	1 cut(s)	608
BlsI	GCNGC	1 cut(s)	609
Bme1390I	CCNGG	4 cut(s)	330, 342, 381, 394
BmgBI	CACGTC	1 cut(s)	175
BmiI	GGNNCC	1 cut(s)	398
BmrFI	CCNGG	4 cut(s)	330, 342, 381, 394
BmsI	GCATC	1 cut(s)	531
Bpu10I	CCTNAGC	1 cut(s)	87
Bpu14I	TTCGAA	1 cut(s)	443
BsaJI	CCNNGG	1 cut(s)	95
Bse1I	ACTGG	1 cut(s)	115
Bse3DI	GCAATG	1 cut(s)	460
BseBI	CCWGG	4 cut(s)	330, 342, 381, 394
BseDI	CCNNGG	1 cut(s)	95
BseGI	GGATG	3 cut(s)	41, 534, 648
BseMI	GCAATG	1 cut(s)	460
BseMII	CTCAG	2 cut(s)	78, 555
BseNI	ACTGG	1 cut(s)	115
BseRI	GAGGAG	1 cut(s)	463
BseSI	GKGCMC	1 cut(s)	388
BseXI	GCAGC	1 cut(s)	594
BsgI	GTGCAG	1 cut(s)	264
BshNI	GGYRCC	1 cut(s)	396
BsiHKAI	GWGCWC	2 cut(s)	104, 388
BsmAI	GTCTC	1 cut(s)	203
Bsp119I	TTCGAA	1 cut(s)	443
Bsp1286I	GDGCHC	2 cut(s)	104, 388
Bsp143I	GATC	4 cut(s)	49, 415, 599, 633
BspACI	CCGC	1 cut(s)	475
BspCNI	CTCAG	2 cut(s)	79, 556
BspLI	GGNNCC	1 cut(s)	398
BspMAI	CTGCAG	1 cut(s)	492
BspMI	ACCTGC	2 cut(s)	31, 221
BspPI	GGATC	2 cut(s)	57, 628
BspT104I	TTCGAA	1 cut(s)	443
BspT107I	GGYRCC	1 cut(s)	396
BsrBI	CCGCTC	1 cut(s)	475
BsrDI	GCAATG	1 cut(s)	460
BsrI	ACTGG	1 cut(s)	115
BssECI	CCNNGG	1 cut(s)	95
BssMI	GATC	4 cut(s)	49, 415, 599, 633
BssNAI	GTATAC	1 cut(s)	236
Bst1107I	GTATAC	1 cut(s)	236
Bst2UI	CCWGG	4 cut(s)	330, 342, 381, 394
Bst4CI	ACNGT	1 cut(s)	26
Bst6I	CTCTTC	1 cut(s)	440
BstBI	TTCGAA	1 cut(s)	443
BstDEI	CTNAG	2 cut(s)	87, 564
BstF5I	GGATG	3 cut(s)	41, 534, 648
BstKTI	GATC	4 cut(s)	52, 418, 602, 636
BstMAI	GTCTC	1 cut(s)	203
BstMBI	GATC	4 cut(s)	49, 415, 599, 633
BstMWI	GCNNNNNNNGC	1 cut(s)	108
BstNI	CCWGG	4 cut(s)	330, 342, 381, 394
BstNSI	RCATGY	1 cut(s)	581
BstSCI	CCNGG	4 cut(s)	328, 340, 379, 392
BstSFI	CTRYAG	1 cut(s)	488
BstSLI	GKGCMC	1 cut(s)	388
BstV1I	GCAGC	1 cut(s)	594
BstX2I	RGATCY	2 cut(s)	49, 633
BstYI	RGATCY	2 cut(s)	49, 633
BstZ17I	GTATAC	1 cut(s)	236
BtrI	CACGTC	1 cut(s)	175
BtsCI	GGATG	3 cut(s)	41, 534, 648
BtsIMutI	CAGTG	2 cut(s)	31, 136
BveI	ACCTGC	2 cut(s)	31, 221
CseI	GACGC	1 cut(s)	80
CsiI	ACCWGGT	3 cut(s)	328, 340, 379
CviAII	CATG	1 cut(s)	578
CviJI	RGCY	5 cut(s)	102, 321, 505, 568, 589
CviKI_1	RGCY	5 cut(s)	102, 321, 505, 568, 589
DdeI	CTNAG	2 cut(s)	87, 564
DpnI	GATC	4 cut(s)	51, 417, 601, 635
DpnII	GATC	4 cut(s)	49, 415, 599, 633
DraIII	CACNNNGTG	1 cut(s)	383
Eam1104I	CTCTTC	1 cut(s)	440
EarI	CTCTTC	1 cut(s)	440
Ecl136II	GAGCTC	1 cut(s)	102
Eco24I	GRGCYC	1 cut(s)	104
Eco53kI	GAGCTC	1 cut(s)	102
Eco57I	CTGAAG	1 cut(s)	521
EcoICRI	GAGCTC	1 cut(s)	102
EcoRI	GAATTC	1 cut(s)	165
EcoRII	CCWGG	4 cut(s)	328, 340, 379, 392
EcoT38I	GRGCYC	1 cut(s)	104
FaeI	CATG	1 cut(s)	581
FaiI	YATR	4 cut(s)	236, 422, 484, 579
FatI	CATG	1 cut(s)	577
FblI	GTMKAC	1 cut(s)	235
Fnu4HI	GCNGC	1 cut(s)	608
FokI	GGATG	3 cut(s)	48, 521, 655
FriOI	GRGCYC	1 cut(s)	104
Fsp4HI	GCNGC	1 cut(s)	608
FspBI	CTAG	3 cut(s)	12, 152, 590
GluI	GCNGC	1 cut(s)	608
HgaI	GACGC	1 cut(s)	80
Hin1II	CATG	1 cut(s)	581
HinfI	GANTC	5 cut(s)	256, 271, 440, 493, 515
HphI	GGTGA	3 cut(s)	16, 318, 369
Hpy166II	GTNNAC	5 cut(s)	7, 236, 335, 347, 386
Hpy188I	TCNGA	4 cut(s)	35, 99, 193, 565
Hpy188III	TCNNGA	7 cut(s)	66, 86, 170, 260, 413, 499, 538
Hpy8I	GTNNAC	5 cut(s)	7, 236, 335, 347, 386
HpyAV	CCTTC	4 cut(s)	217, 285, 294, 640
HpyCH4III	ACNGT	1 cut(s)	26
HpyCH4IV	ACGT	1 cut(s)	174
HpyCH4V	TGCA	4 cut(s)	281, 293, 386, 490
HpyF10VI	GCNNNNNNNGC	1 cut(s)	108
HpyF3I	CTNAG	2 cut(s)	87, 564
HpySE526I	ACGT	1 cut(s)	174
Hsp92II	CATG	1 cut(s)	581
Kzo9I	GATC	4 cut(s)	49, 415, 599, 633
LmnI	GCTCC	3 cut(s)	99, 107, 450
Lsp1109I	GCAGC	1 cut(s)	594
LweI	GCATC	1 cut(s)	531
MabI	ACCWGGT	3 cut(s)	328, 340, 379
MaeI	CTAG	3 cut(s)	12, 152, 590
MaeII	ACGT	1 cut(s)	174
MaeIII	GTNAC	3 cut(s)	79, 175, 375
MalI	GATC	4 cut(s)	51, 417, 601, 635
MbiI	CCGCTC	1 cut(s)	475
MboI	GATC	4 cut(s)	49, 415, 599, 633
MboII	GAAGA	3 cut(s)	174, 457, 549
MflI	RGATCY	2 cut(s)	49, 633
MhlI	GDGCHC	2 cut(s)	104, 388
MluCI	AATT	4 cut(s)	165, 202, 404, 685
MlyI	GAGTC	2 cut(s)	280, 524
MmeI	TCCRAC	1 cut(s)	13
MnlI	CCTC	5 cut(s)	105, 220, 441, 613, 682
MseI	TTAA	4 cut(s)	57, 305, 402, 570
MslI	CAYNNNNRTG	1 cut(s)	539
MspR9I	CCNGG	4 cut(s)	330, 342, 381, 394
MvaI	CCWGG	4 cut(s)	330, 342, 381, 394
MwoI	GCNNNNNNNGC	1 cut(s)	108
NdeII	GATC	4 cut(s)	49, 415, 599, 633
NlaIII	CATG	1 cut(s)	581
NlaIV	GGNNCC	1 cut(s)	398
NmuCI	GTSAC	3 cut(s)	79, 175, 375
NspI	RCATGY	1 cut(s)	581
NspV	TTCGAA	1 cut(s)	443
PfeI	GAWTC	3 cut(s)	256, 440, 493
PkrI	GCNGC	1 cut(s)	609
PleI	GAGTC	2 cut(s)	279, 523
PpsI	GAGTC	2 cut(s)	279, 523
Psp124BI	GAGCTC	1 cut(s)	104
Psp6I	CCWGG	4 cut(s)	328, 340, 379, 392
PspGI	CCWGG	4 cut(s)	328, 340, 379, 392
PspN4I	GGNNCC	1 cut(s)	398
PstI	CTGCAG	1 cut(s)	492
PsuI	RGATCY	2 cut(s)	49, 633
RseI	CAYNNNNRTG	1 cut(s)	539
SacI	GAGCTC	1 cut(s)	104
SaqAI	TTAA	4 cut(s)	57, 305, 402, 570
SatI	GCNGC	1 cut(s)	608
Sau3AI	GATC	4 cut(s)	49, 415, 599, 633
SchI	GAGTC	2 cut(s)	280, 524
ScrFI	CCNGG	4 cut(s)	330, 342, 381, 394
SduI	GDGCHC	2 cut(s)	104, 388
SexAI	ACCWGGT	3 cut(s)	328, 340, 379
SfaNI	GCATC	1 cut(s)	531
SfcI	CTRYAG	1 cut(s)	488
SfuI	TTCGAA	1 cut(s)	443
SmiMI	CAYNNNNRTG	1 cut(s)	539
Sse9I	AATT	4 cut(s)	165, 202, 404, 685
SsiI	CCGC	1 cut(s)	475
SspI	AATATT	1 cut(s)	658
SspMI	CTAG	3 cut(s)	12, 152, 590
SstI	GAGCTC	1 cut(s)	104
StyD4I	CCNGG	4 cut(s)	328, 340, 379, 392
TaaI	ACNGT	1 cut(s)	26
TaiI	ACGT	1 cut(s)	177
TaqI	TCGA	1 cut(s)	443
TasI	AATT	4 cut(s)	165, 202, 404, 685
TfiI	GAWTC	3 cut(s)	256, 440, 493
Tru1I	TTAA	4 cut(s)	57, 305, 402, 570
Tru9I	TTAA	4 cut(s)	57, 305, 402, 570
TscAI	CASTG	2 cut(s)	31, 136
TseFI	GTSAC	3 cut(s)	79, 175, 375
TseI	GCWGC	1 cut(s)	607
Tsp45I	GTSAC	3 cut(s)	79, 175, 375
TspDTI	ATGAA	3 cut(s)	276, 549, 659
TspRI	CASTG	2 cut(s)	31, 136
VneI	GTGCAC	1 cut(s)	384
XapI	RAATTY	2 cut(s)	165, 404
XceI	RCATGY	1 cut(s)	581
XmiI	GTMKAC	1 cut(s)	235
XspI	CTAG	3 cut(s)	12, 152, 590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.