Prupe.5G011500_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0000902
Physical Location & Seq
Reverse (-)
1211509 .. 1214118
2610 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G011500.1

Sequence Viewer

Length: 855 bp
ATGGTGAGCTCTAACCTCAACAACAATGCACTGGGAAACAGTGTGGTTGGTTCATCTGTGTGCCATAAGCAATCAACATTACCGATGAAAAAGATAGCATTGAGAGATGTACAGAATGATAATAGGAACTTTATGCCAAATTATCCTGAGAATTGTTTTCTAGGACGACCAGTCGCGGATCCCATTAAGGTTCTGGGAACTAAGATACTCAACCCTGAGTTGCCACGGAGCCCACCTTGTCACCAATTCACGAGCATCAGCAGTGCAAGTGATCAGCTCATGCATGGCGGTGGTGGGAGGAAGTTAGAGTCAGCACTAGGCAAGCGAAGAGTTCAAGGTGTGACAGAACAAAATACTTACTCTCTCAATTTCAAACGATATTGTTCGCAAAAGCAGCAAGACCTACCTAGAGACAGAACCAAGAATCAGGAACATGAGATATCTGCATTTGCACCAATGCCTTCGGCTTCTCCGGTTAAATTTTCACCTGGTAAACCACCAGTTCCAATTTTTCTTGGAAAGCCCAGTAATGGTTTGCCAGCTGCTCATTCCAGGCACCTTAGATTCACTCCTGAATCTATGGTTCCTCACTTGGTTGGTTCTGAGAAGAACCATGATGAGCAAAGGACAGAAGGGTTTCTACATTTGCAGAACCTCTTGAAGCAATTTGATGATTCTGATCAGAGAGAATACATCCAGACGCTTCGTTATTTATCGCCATCTGAGCTTAGCAGACATGCCGTTGAGCTAGAGAAAAGATCAATGCAGCTATCAGTTGAGGAAGCAAAAGAGATCCAAAGGATGATGGCTCTAAATATATTGGGGAAGTCTTCAATGACAAGCAATTTTTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LIN52

Protein Analysis

285

Amino Acids

31.83

Weight (kDa)

9.45

Isoelectric Point (pI)

63.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 555
AccII CGCG 1 cut(s) 176
AciI CCGC 2 cut(s) 176, 288
AclWI GGATC 3 cut(s) 173, 186, 787
AcsI RAATTY 1 cut(s) 479
AfaI GTAC 1 cut(s) 111
AfiI CCNNNNNNNGG 1 cut(s) 530
AgsI TTSAA 4 cut(s) 335, 373, 661, 834
AhdI GACNNNNNGTC 1 cut(s) 170
AjnI CCWGG 2 cut(s) 487, 551
AluBI AGCT 6 cut(s) 9, 277, 542, 727, 748, 769
AluI AGCT 6 cut(s) 9, 277, 542, 727, 748, 769
Alw21I GWGCWC 1 cut(s) 11
Alw26I GTCTC 1 cut(s) 405
AlwI GGATC 3 cut(s) 173, 186, 787
ApeKI GCWGC 3 cut(s) 394, 542, 766
ApoI RAATTY 1 cut(s) 479
Asp700I GAANNNNTTC 1 cut(s) 636
AsuHPI GGTGA 3 cut(s) 16, 233, 477
BamHI GGATCC 1 cut(s) 178
BanI GGYRCC 1 cut(s) 555
BanII GRGCYC 2 cut(s) 11, 233
BarI GAAGNNNNNNTAC 2 cut(s) 624, 656
BauI CACGAG 1 cut(s) 250
BbsI GAAGAC 1 cut(s) 822
Bbv12I GWGCWC 1 cut(s) 11
BbvI GCAGC 3 cut(s) 406, 529, 778
BccI CCATC 2 cut(s) 727, 799
BceAI ACGGC 1 cut(s) 725
BciT130I CCWGG 2 cut(s) 489, 553
BclI TGATCA 2 cut(s) 271, 679
BcoDI GTCTC 1 cut(s) 405
BfaI CTAG 4 cut(s) 161, 317, 408, 749
BisI GCNGC 3 cut(s) 395, 543, 767
BlpI GCTNAGC 1 cut(s) 728
BlsI GCNGC 3 cut(s) 396, 544, 768
Bme1390I CCNGG 2 cut(s) 489, 553
BmeRI GACNNNNNGTC 1 cut(s) 170
BmiI GGNNCC 4 cut(s) 180, 230, 557, 585
BmrFI CCNGG 2 cut(s) 489, 553
BmrI ACTGGG 2 cut(s) 41, 519
BmsI GCATC 1 cut(s) 264
BmuI ACTGGG 2 cut(s) 41, 519
BpiI GAAGAC 1 cut(s) 822
Bpu1102I GCTNAGC 1 cut(s) 728
BsaBI GATNNNNATC 1 cut(s) 678
BsaJI CCNNGG 1 cut(s) 224
BsaWI WCCGGW 1 cut(s) 472
Bsc4I CCNNNNNNNGG 1 cut(s) 530
Bse1I ACTGG 4 cut(s) 36, 170, 500, 525
Bse8I GATNNNNATC 1 cut(s) 678
BseBI CCWGG 2 cut(s) 489, 553
BseDI CCNNGG 1 cut(s) 224
BseGI GGATG 2 cut(s) 693, 807
BseJI GATNNNNATC 1 cut(s) 678
BseLI CCNNNNNNNGG 1 cut(s) 530
BseMII CTCAG 4 cut(s) 138, 207, 594, 714
BseNI ACTGG 4 cut(s) 36, 170, 500, 525
BseXI GCAGC 3 cut(s) 406, 529, 778
Bsh1236I CGCG 1 cut(s) 176
BshNI GGYRCC 1 cut(s) 555
BsiHKAI GWGCWC 1 cut(s) 11
BsiSI CCGG 1 cut(s) 473
BslI CCNNNNNNNGG 1 cut(s) 530
BsmAI GTCTC 1 cut(s) 405
Bsp1286I GDGCHC 2 cut(s) 11, 233
Bsp1407I TGTACA 1 cut(s) 109
Bsp143I GATC 5 cut(s) 178, 271, 679, 758, 792
Bsp1720I GCTNAGC 1 cut(s) 728
BspACI CCGC 2 cut(s) 176, 288
BspCNI CTCAG 4 cut(s) 139, 208, 595, 715
BspFNI CGCG 1 cut(s) 176
BspLI GGNNCC 4 cut(s) 180, 230, 557, 585
BspPI GGATC 3 cut(s) 173, 186, 787
BspT107I GGYRCC 1 cut(s) 555
BsrGI TGTACA 1 cut(s) 109
BsrI ACTGG 4 cut(s) 36, 170, 500, 525
BssECI CCNNGG 1 cut(s) 224
BssMI GATC 5 cut(s) 178, 271, 679, 758, 792
BssSI CACGAG 1 cut(s) 250
Bst2BI CACGAG 1 cut(s) 250
Bst2UI CCWGG 2 cut(s) 489, 553
Bst4CI ACNGT 1 cut(s) 41
Bst6I CTCTTC 1 cut(s) 322
BstAUI TGTACA 1 cut(s) 109
BstC8I GCNNGC 2 cut(s) 323, 540
BstDEI CTNAG 7 cut(s) 147, 201, 216, 560, 603, 723, 728
BstDSI CCRYGG 1 cut(s) 224
BstF5I GGATG 2 cut(s) 693, 807
BstFNI CGCG 1 cut(s) 176
BstKTI GATC 5 cut(s) 181, 274, 682, 761, 795
BstMAI GTCTC 1 cut(s) 405
BstMBI GATC 5 cut(s) 178, 271, 679, 758, 792
BstMWI GCNNNNNNNGC 2 cut(s) 394, 724
BstNI CCWGG 2 cut(s) 489, 553
BstNSI RCATGY 1 cut(s) 740
BstSCI CCNGG 2 cut(s) 487, 551
BstUI CGCG 1 cut(s) 176
BstV1I GCAGC 3 cut(s) 406, 529, 778
BstV2I GAAGAC 1 cut(s) 822
BstX2I RGATCY 2 cut(s) 178, 792
BstYI RGATCY 2 cut(s) 178, 792
BtgI CCRYGG 1 cut(s) 224
BtsCI GGATG 2 cut(s) 693, 807
BtsI GCAGTG 1 cut(s) 268
BtsIMutI CAGTG 3 cut(s) 29, 46, 268
Cac8I GCNNGC 2 cut(s) 323, 540
CseI GACGC 1 cut(s) 709
CsiI ACCWGGT 1 cut(s) 487
Csp6I GTAC 1 cut(s) 110
CviAII CATG 5 cut(s) 280, 284, 434, 614, 737
CviQI GTAC 1 cut(s) 110
DdeI CTNAG 7 cut(s) 147, 201, 216, 560, 603, 723, 728
DpnI GATC 5 cut(s) 180, 273, 681, 760, 794
DpnII GATC 5 cut(s) 178, 271, 679, 758, 792
DriI GACNNNNNGTC 1 cut(s) 170
Eam1104I CTCTTC 1 cut(s) 322
Eam1105I GACNNNNNGTC 1 cut(s) 170
EarI CTCTTC 1 cut(s) 322
Ecl136II GAGCTC 1 cut(s) 9
Eco24I GRGCYC 2 cut(s) 11, 233
Eco32I GATATC 1 cut(s) 441
Eco53kI GAGCTC 1 cut(s) 9
EcoICRI GAGCTC 1 cut(s) 9
EcoRII CCWGG 2 cut(s) 487, 551
EcoRV GATATC 1 cut(s) 441
EcoT22I ATGCAT 1 cut(s) 285
EcoT38I GRGCYC 2 cut(s) 11, 233
FaeI CATG 5 cut(s) 283, 287, 437, 617, 740
FatI CATG 5 cut(s) 279, 283, 433, 613, 736
FbaI TGATCA 2 cut(s) 271, 679
Fnu4HI GCNGC 3 cut(s) 395, 543, 767
FokI GGATG 2 cut(s) 680, 814
FriOI GRGCYC 2 cut(s) 11, 233
Fsp4HI GCNGC 3 cut(s) 395, 543, 767
FspBI CTAG 4 cut(s) 161, 317, 408, 749
GluI GCNGC 3 cut(s) 395, 543, 767
HapII CCGG 1 cut(s) 473
HgaI GACGC 1 cut(s) 709
Hin1II CATG 5 cut(s) 283, 287, 437, 617, 740
HinfI GANTC 5 cut(s) 308, 424, 564, 575, 674
HpaII CCGG 1 cut(s) 473
HphI GGTGA 3 cut(s) 16, 233, 477
Hpy166II GTNNAC 1 cut(s) 494
Hpy188I TCNGA 4 cut(s) 604, 679, 684, 724
Hpy188III TCNNGA 6 cut(s) 146, 250, 428, 572, 658, 697
Hpy8I GTNNAC 1 cut(s) 494
HpyAV CCTTC 2 cut(s) 471, 626
HpyCH4III ACNGT 1 cut(s) 41
HpyCH4V TGCA 7 cut(s) 29, 266, 283, 446, 452, 649, 766
HpyF10VI GCNNNNNNNGC 2 cut(s) 394, 724
HpyF3I CTNAG 7 cut(s) 147, 201, 216, 560, 603, 723, 728
Hsp92II CATG 5 cut(s) 283, 287, 437, 617, 740
Ksp22I TGATCA 2 cut(s) 271, 679
Kzo9I GATC 5 cut(s) 178, 271, 679, 758, 792
LmnI GCTCC 1 cut(s) 228
Lsp1109I GCAGC 3 cut(s) 406, 529, 778
LweI GCATC 1 cut(s) 264
MabI ACCWGGT 1 cut(s) 487
MaeI CTAG 4 cut(s) 161, 317, 408, 749
MaeIII GTNAC 2 cut(s) 239, 340
MalI GATC 5 cut(s) 180, 273, 681, 760, 794
MboI GATC 5 cut(s) 178, 271, 679, 758, 792
MboII GAAGA 3 cut(s) 339, 619, 822
MflI RGATCY 2 cut(s) 178, 792
MhlI GDGCHC 2 cut(s) 11, 233
MluCI AATT 8 cut(s) 139, 151, 245, 367, 479, 507, 665, 844
MlyI GAGTC 1 cut(s) 317
MnlI CCTC 5 cut(s) 26, 291, 597, 665, 772
Mph1103I ATGCAT 1 cut(s) 285
MroXI GAANNNNTTC 1 cut(s) 636
MseI TTAA 2 cut(s) 186, 477
MslI CAYNNNNRTG 2 cut(s) 58, 288
MspA1I CMGCKG 1 cut(s) 542
MspI CCGG 1 cut(s) 473
MspR9I CCNGG 2 cut(s) 489, 553
MvaI CCWGG 2 cut(s) 489, 553
MvnI CGCG 1 cut(s) 176
MwoI GCNNNNNNNGC 2 cut(s) 394, 724
NdeII GATC 5 cut(s) 178, 271, 679, 758, 792
NlaIII CATG 5 cut(s) 283, 287, 437, 617, 740
NlaIV GGNNCC 4 cut(s) 180, 230, 557, 585
NmuCI GTSAC 2 cut(s) 239, 340
NsiI ATGCAT 1 cut(s) 285
NspI RCATGY 1 cut(s) 740
PdmI GAANNNNTTC 1 cut(s) 636
PfeI GAWTC 4 cut(s) 424, 564, 575, 674
PkrI GCNGC 3 cut(s) 396, 544, 768
PleI GAGTC 1 cut(s) 316
PpsI GAGTC 1 cut(s) 316
Psp124BI GAGCTC 1 cut(s) 11
Psp6I CCWGG 2 cut(s) 487, 551
PspGI CCWGG 2 cut(s) 487, 551
PspN4I GGNNCC 4 cut(s) 180, 230, 557, 585
PsuI RGATCY 2 cut(s) 178, 792
PvuII CAGCTG 1 cut(s) 542
RsaI GTAC 1 cut(s) 111
RsaNI GTAC 1 cut(s) 110
RseI CAYNNNNRTG 2 cut(s) 58, 288
SacI GAGCTC 1 cut(s) 11
SaqAI TTAA 2 cut(s) 186, 477
SatI GCNGC 3 cut(s) 395, 543, 767
Sau3AI GATC 5 cut(s) 178, 271, 679, 758, 792
SchI GAGTC 1 cut(s) 317
ScrFI CCNGG 2 cut(s) 489, 553
SduI GDGCHC 2 cut(s) 11, 233
SexAI ACCWGGT 1 cut(s) 487
SfaNI GCATC 1 cut(s) 264
SmiMI CAYNNNNRTG 2 cut(s) 58, 288
Sse9I AATT 8 cut(s) 139, 151, 245, 367, 479, 507, 665, 844
SsiI CCGC 2 cut(s) 176, 288
SspMI CTAG 4 cut(s) 161, 317, 408, 749
SstI GAGCTC 1 cut(s) 11
StyD4I CCNGG 2 cut(s) 487, 551
TaaI ACNGT 1 cut(s) 41
TasI AATT 8 cut(s) 139, 151, 245, 367, 479, 507, 665, 844
TatI WGTACW 1 cut(s) 109
TfiI GAWTC 4 cut(s) 424, 564, 575, 674
Tru1I TTAA 2 cut(s) 186, 477
Tru9I TTAA 2 cut(s) 186, 477
TscAI CASTG 3 cut(s) 36, 46, 268
TseFI GTSAC 2 cut(s) 239, 340
TseI GCWGC 3 cut(s) 394, 542, 766
Tsp45I GTSAC 2 cut(s) 239, 340
TspDTI ATGAA 2 cut(s) 42, 101
TspGWI ACGGA 1 cut(s) 241
TspRI CASTG 3 cut(s) 36, 46, 268
XapI RAATTY 1 cut(s) 479
XceI RCATGY 1 cut(s) 740
XcmI CCANNNNNNNNNTGG 1 cut(s) 190
XmnI GAANNNNTTC 1 cut(s) 636
XspI CTAG 4 cut(s) 161, 317, 408, 749
Zsp2I ATGCAT 1 cut(s) 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.