Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000902

Physical Location & Seq

Genomic Coordinates Reverse (-)

12152991 .. 12154063

Gene Structure 1073 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0153000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGCTGACAAGAACCAACAAGTTTATCCTTTGGCTCCGGCTAACGGGTACGTAAGAAGTGATGGAGAGTCTTTGTCCGAAGATGAGCTCAAGCGCAAGAAGAGAATCAAGTGCTTTGCTTATATTGGTATTTTCATTGTGTTCCAGATCGCAGTAATGACCGTGTTTGGTCTCACTGTGATGAAAGTCAAGACCCCCAAGGTTAGACTCGGCACAATCACCATCACAGACTTCACCTCTTCCAATACAGCGCCTTCATTCAACACAACCTTCAACACCCAAATCAGGGTCAAGAACACCAACTGGGGTCCTTACAAGTTCGACCAAGGCACCGTGACATTCATGTACCAAAATACAGCTATTGGGACAGTCAATGTACCCAAGGGCAAGGCCGGGATGCGTGGCACCAAGAAGATCAACGTGAATGTGAGCTTGAACACCGAAGCATTGACGACCGCCTCTACCCTCGTCAGTGAATTGAACGGCGGAGTTTTGACACTGAATAGCGAAGCAACATTAACCGGAAAGGTTGAGTTGATGTTGATCATGAAGAAGAAGAAGTCTGCGACTATGAGCTGCACCATAAAAATTGATGTGTCCGGGAAGAAAGTCAATAGTTTAGAATGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIN52

Protein Analysis

210

Amino Acids

22.98

Weight (kDa)

9.83

Isoelectric Point (pI)

20.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_2	PF03168	95 - 194	2.6e-08	Late embryogenesis abundant protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000902)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38280
fragaria_vesca	FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_5g25250 FvH4_5g25250 FvH4_5g25250 FvH4_5g25250 FvH4_5g25250 FvH4_5g25250 FvH4_5g25250
malus_domestica	MD05G1134400.v1.1 MD06G1009100.v1.1 MD10G1139500.v1.1
prunus_persica	Prupe.5G011500_v2.0.a1 Prupe.8G178200_v2.0.a1 Prupe.8G178200_v2.0.a1 Prupe.8G178200_v2.0.a1 Prupe.8G178200_v2.0.a1 Prupe.8G178200_v2.0.a1 Prupe.8G178200_v2.0.a1
pyrus_communis	pycom05g13100 pycom06g00760 pycom10g11850
rosa_chinensis	RchiOBHm_Chr6g0280681 RchiOBHm_Chr7g0215391
rosa_laevigata	RLG00000002666 RLG00000013036
rosa_multiflora	Rmu_sc0000355.1_g000008 Rmu_sc0000976.1_g000009
rosa_roxburghii	Rroxscaffold_3G00244230 Rroxscaffold_7G00187760
rosa_rugosa	Rorug06G0133800 Rorug06G0133800 Rorug06G0133800 Rorug06G0133800 Rorug07G0152800 Rorug07G0152900 Rorug07G0153000 Rorug07G0153100
rosa_samantha	Rh6AG246400 Rh6BG248600 Rh6CG249900 Rh6DG241300 Rh7AG289600 Rh7BG281500 Rh7CG309200 Rh7DG293100
rosa_wichuraiana	Rw6G021320 Rw7G024740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	329, 404
AciI	CCGC	2 cut(s)	456, 486
AfaI	GTAC	3 cut(s)	50, 347, 378
AfiI	CCNNNNNNNGG	3 cut(s)	44, 285, 286
AgsI	TTSAA	4 cut(s)	262, 274, 436, 481
AluBI	AGCT	4 cut(s)	88, 359, 432, 576
AluI	AGCT	4 cut(s)	88, 359, 432, 576
Alw21I	GWGCWC	1 cut(s)	90
Alw26I	GTCTC	1 cut(s)	176
AoxI	GGCC	1 cut(s)	390
ApeKI	GCWGC	1 cut(s)	576
AspLEI	GCGC	2 cut(s)	96, 253
AspS9I	GGNCC	1 cut(s)	308
AsuC2I	CCSGG	2 cut(s)	394, 601
AsuHPI	GGTGA	2 cut(s)	211, 226
AvaII	GGWCC	1 cut(s)	308
BanI	GGYRCC	2 cut(s)	329, 404
BanII	GRGCYC	1 cut(s)	90
Bbv12I	GWGCWC	1 cut(s)	90
BbvI	GCAGC	1 cut(s)	563
BccI	CCATC	2 cut(s)	56, 230
BceAI	ACGGC	1 cut(s)	499
BclI	TGATCA	1 cut(s)	543
BcnI	CCSGG	2 cut(s)	394, 601
BcoDI	GTCTC	1 cut(s)	176
BfoI	RGCGCY	1 cut(s)	254
BisI	GCNGC	1 cut(s)	577
BlsI	GCNGC	1 cut(s)	578
Bme1390I	CCNGG	2 cut(s)	394, 601
Bme18I	GGWCC	1 cut(s)	308
BmgT120I	GGNCC	1 cut(s)	308
BmiI	GGNNCC	4 cut(s)	36, 309, 331, 406
BmrFI	CCNGG	2 cut(s)	394, 601
BmrI	ACTGGG	1 cut(s)	313
BmsI	GCATC	1 cut(s)	387
BmuI	ACTGGG	1 cut(s)	313
BpuEI	CTTGAG	1 cut(s)	74
BpuMI	CCSGG	2 cut(s)	394, 601
BsaAI	YACGTR	1 cut(s)	52
BsaBI	GATNNNNATC	1 cut(s)	542
BsaI	GGTCTC	1 cut(s)	176
BsaJI	CCNNGG	3 cut(s)	198, 325, 381
BsaWI	WCCGGW	1 cut(s)	521
Bsc4I	CCNNNNNNNGG	3 cut(s)	44, 285, 286
Bse1I	ACTGG	1 cut(s)	308
Bse8I	GATNNNNATC	1 cut(s)	542
BseDI	CCNNGG	3 cut(s)	198, 325, 381
BseGI	GGATG	1 cut(s)	402
BseJI	GATNNNNATC	1 cut(s)	542
BseLI	CCNNNNNNNGG	3 cut(s)	44, 285, 286
BseNI	ACTGG	1 cut(s)	308
BseXI	GCAGC	1 cut(s)	563
BsgI	GTGCAG	1 cut(s)	562
Bsh1285I	CGRYCG	1 cut(s)	456
BshFI	GGCC	1 cut(s)	392
BshNI	GGYRCC	2 cut(s)	329, 404
BsiEI	CGRYCG	1 cut(s)	456
BsiHKAI	GWGCWC	1 cut(s)	90
BsiSI	CCGG	4 cut(s)	38, 393, 522, 600
BslFI	GGGAC	1 cut(s)	379
BslI	CCNNNNNNNGG	3 cut(s)	44, 285, 286
BsmAI	GTCTC	1 cut(s)	176
BsmFI	GGGAC	1 cut(s)	379
BsmI	GAATGC	1 cut(s)	629
BsnI	GGCC	1 cut(s)	392
Bso31I	GGTCTC	1 cut(s)	176
Bsp1286I	GDGCHC	1 cut(s)	90
Bsp143I	GATC	3 cut(s)	147, 414, 543
BspACI	CCGC	2 cut(s)	456, 486
BspANI	GGCC	1 cut(s)	392
BspHI	TCATGA	1 cut(s)	546
BspLI	GGNNCC	4 cut(s)	36, 309, 331, 406
BspT107I	GGYRCC	2 cut(s)	329, 404
BspTNI	GGTCTC	1 cut(s)	176
BsrI	ACTGG	1 cut(s)	308
BssECI	CCNNGG	3 cut(s)	198, 325, 381
BssMI	GATC	3 cut(s)	147, 414, 543
BssT1I	CCWWGG	3 cut(s)	198, 325, 381
Bst4CI	ACNGT	4 cut(s)	163, 178, 334, 370
Bst6I	CTCTTC	2 cut(s)	95, 244
BstBAI	YACGTR	1 cut(s)	52
BstF5I	GGATG	1 cut(s)	402
BstH2I	RGCGCY	1 cut(s)	254
BstHHI	GCGC	2 cut(s)	96, 253
BstKTI	GATC	3 cut(s)	150, 417, 546
BstMAI	GTCTC	1 cut(s)	176
BstMBI	GATC	3 cut(s)	147, 414, 543
BstMCI	CGRYCG	1 cut(s)	456
BstSCI	CCNGG	2 cut(s)	392, 599
BstSNI	TACGTA	1 cut(s)	52
BstV1I	GCAGC	1 cut(s)	563
BsuRI	GGCC	1 cut(s)	392
BtsCI	GGATG	1 cut(s)	402
BtsIMutI	CAGTG	3 cut(s)	174, 478, 497
CciI	TCATGA	1 cut(s)	546
CfoI	GCGC	2 cut(s)	96, 253
Cfr13I	GGNCC	1 cut(s)	308
Csp6I	GTAC	3 cut(s)	49, 346, 377
CviAII	CATG	2 cut(s)	343, 547
CviJI	RGCY	8 cut(s)	5, 35, 41, 88, 359, 392, 432, 576
CviKI_1	RGCY	8 cut(s)	5, 35, 41, 88, 359, 392, 432, 576
CviQI	GTAC	3 cut(s)	49, 346, 377
DpnI	GATC	3 cut(s)	149, 416, 545
DpnII	GATC	3 cut(s)	147, 414, 543
Eam1104I	CTCTTC	2 cut(s)	95, 244
EarI	CTCTTC	2 cut(s)	95, 244
EciI	GGCGGA	1 cut(s)	501
Ecl136II	GAGCTC	1 cut(s)	88
Eco105I	TACGTA	1 cut(s)	52
Eco130I	CCWWGG	3 cut(s)	198, 325, 381
Eco24I	GRGCYC	1 cut(s)	90
Eco31I	GGTCTC	1 cut(s)	176
Eco47I	GGWCC	1 cut(s)	308
Eco53kI	GAGCTC	1 cut(s)	88
EcoICRI	GAGCTC	1 cut(s)	88
EcoO109I	RGGNCCY	1 cut(s)	308
EcoT14I	CCWWGG	3 cut(s)	198, 325, 381
EcoT38I	GRGCYC	1 cut(s)	90
ErhI	CCWWGG	3 cut(s)	198, 325, 381
FaeI	CATG	2 cut(s)	346, 550
FaiI	YATR	5 cut(s)	123, 344, 548, 572, 584
FaqI	GGGAC	1 cut(s)	379
FatI	CATG	2 cut(s)	342, 546
FbaI	TGATCA	1 cut(s)	543
Fnu4HI	GCNGC	1 cut(s)	577
FokI	GGATG	1 cut(s)	409
FriOI	GRGCYC	1 cut(s)	90
Fsp4HI	GCNGC	1 cut(s)	577
GlaI	GCGC	2 cut(s)	95, 252
GluI	GCNGC	1 cut(s)	577
HaeII	RGCGCY	1 cut(s)	254
HaeIII	GGCC	1 cut(s)	392
HapII	CCGG	4 cut(s)	38, 393, 522, 600
HhaI	GCGC	2 cut(s)	96, 253
Hin1II	CATG	2 cut(s)	346, 550
Hin6I	GCGC	2 cut(s)	94, 251
HinP1I	GCGC	2 cut(s)	94, 251
HinfI	GANTC	3 cut(s)	68, 105, 207
HpaII	CCGG	4 cut(s)	38, 393, 522, 600
HphI	GGTGA	2 cut(s)	211, 226
Hpy188I	TCNGA	1 cut(s)	79
Hpy188III	TCNNGA	4 cut(s)	145, 190, 292, 547
HpyAV	CCTTC	2 cut(s)	264, 280
HpyCH4III	ACNGT	4 cut(s)	163, 178, 334, 370
HpyCH4IV	ACGT	2 cut(s)	51, 420
HpyCH4V	TGCA	2 cut(s)	579, 627
HpySE526I	ACGT	2 cut(s)	51, 420
Hsp92II	CATG	2 cut(s)	346, 550
HspAI	GCGC	2 cut(s)	94, 251
Ksp22I	TGATCA	1 cut(s)	543
Kzo9I	GATC	3 cut(s)	147, 414, 543
LmnI	GCTCC	1 cut(s)	40
LpnPI	CCDG	7 cut(s)	51, 158, 271, 289, 406, 535, 613
Lsp1109I	GCAGC	1 cut(s)	563
LweI	GCATC	1 cut(s)	387
MaeII	ACGT	2 cut(s)	51, 420
MaeIII	GTNAC	1 cut(s)	334
MalI	GATC	3 cut(s)	149, 416, 545
MboI	GATC	3 cut(s)	147, 414, 543
MboII	GAAGA	8 cut(s)	92, 112, 231, 424, 562, 565, 568, 616
MhlI	GDGCHC	1 cut(s)	90
MluCI	AATT	2 cut(s)	476, 588
MlyI	GAGTC	2 cut(s)	77, 201
MnlI	CCTC	3 cut(s)	247, 469, 476
MseI	TTAA	1 cut(s)	518
MslI	CAYNNNNRTG	1 cut(s)	179
MspI	CCGG	4 cut(s)	38, 393, 522, 600
MspR9I	CCNGG	2 cut(s)	394, 601
Mva1269I	GAATGC	1 cut(s)	629
NciI	CCSGG	2 cut(s)	394, 601
NdeII	GATC	3 cut(s)	147, 414, 543
NlaIII	CATG	2 cut(s)	346, 550
NlaIV	GGNNCC	4 cut(s)	36, 309, 331, 406
NmeAIII	GCCGAG	1 cut(s)	189
NmuCI	GTSAC	1 cut(s)	334
PagI	TCATGA	1 cut(s)	546
PctI	GAATGC	1 cut(s)	629
PfeI	GAWTC	1 cut(s)	105
PfoI	TCCNGGA	1 cut(s)	599
PkrI	GCNGC	1 cut(s)	578
PleI	GAGTC	2 cut(s)	76, 201
PpsI	GAGTC	2 cut(s)	76, 201
Ppu21I	YACGTR	1 cut(s)	52
PpuMI	RGGWCCY	1 cut(s)	308
Psp124BI	GAGCTC	1 cut(s)	90
Psp5II	RGGWCCY	1 cut(s)	308
PspN4I	GGNNCC	4 cut(s)	36, 309, 331, 406
PspPI	GGNCC	1 cut(s)	308
PspPPI	RGGWCCY	1 cut(s)	308
RsaI	GTAC	3 cut(s)	50, 347, 378
RsaNI	GTAC	3 cut(s)	49, 346, 377
RseI	CAYNNNNRTG	1 cut(s)	179
SacI	GAGCTC	1 cut(s)	90
SaqAI	TTAA	1 cut(s)	518
SatI	GCNGC	1 cut(s)	577
Sau3AI	GATC	3 cut(s)	147, 414, 543
Sau96I	GGNCC	1 cut(s)	308
SchI	GAGTC	2 cut(s)	77, 201
ScrFI	CCNGG	2 cut(s)	394, 601
SduI	GDGCHC	1 cut(s)	90
SfaNI	GCATC	1 cut(s)	387
SinI	GGWCC	1 cut(s)	308
SmiMI	CAYNNNNRTG	1 cut(s)	179
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
SnaBI	TACGTA	1 cut(s)	52
Sse9I	AATT	2 cut(s)	476, 588
SsiI	CCGC	2 cut(s)	456, 486
SstI	GAGCTC	1 cut(s)	90
StyD4I	CCNGG	2 cut(s)	392, 599
StyI	CCWWGG	3 cut(s)	198, 325, 381
TaaI	ACNGT	4 cut(s)	163, 178, 334, 370
TaiI	ACGT	2 cut(s)	54, 423
TaqI	TCGA	1 cut(s)	321
TasI	AATT	2 cut(s)	476, 588
TfiI	GAWTC	1 cut(s)	105
Tru1I	TTAA	1 cut(s)	518
Tru9I	TTAA	1 cut(s)	518
TscAI	CASTG	3 cut(s)	181, 478, 504
TseFI	GTSAC	1 cut(s)	334
TseI	GCWGC	1 cut(s)	576
Tsp45I	GTSAC	1 cut(s)	334
TspDTI	ATGAA	5 cut(s)	124, 197, 246, 331, 563
TspRI	CASTG	3 cut(s)	181, 478, 504
VpaK11BI	GGWCC	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.