Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0000902

Physical Location & Seq

Genomic Coordinates Forward (+)

33137348 .. 33140500

Gene Structure 3153 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG293100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGTGAAATCTAGCCTCGACAACAATGCACTGGGTGACAGTGTGGTTAATTCACCTATCTCTCATAAACAATCAACATTAAGAATGAAAAAGGTGGCATTGCGAGATGTGCAGAATGATAATAGGATCTATATGCCTAATCATACTGAAAATTCTTGTAATCTAGGACAGCAAGTTGGGGATCTTATTAAGGTTACTGGAACTAAGATAGTCACCCCTGAGCGTCCTCGGAGCTCCCCTTGCCACCAGTTCTCGAACATCAGTGGTTTATGTGAGCAAGCACTAGGCAAGAGAAGAATTCAAGACGTGACAGACCAAAGTGCTGATTGTCTCAATTCCAAACGACATTTACAGAAGCAGGCAGGTGTAACTGATGACAGAACCAAGAAGCAGGAGAATGAGAGTCCTTGTGCACCTTCATTTGCACCAAACTTTTTGACTTCTCCCATTTCCTTTTCACCTGGTAAACCACCAGTTCCACTTTTTCTTGGGAAGTCTAGTAATGCGTCGCCAGGTGCTCGTTCCAGGCACCTTAAATTTACTCCTGATCGTATGGTTTCTAACTCGGTTGATCCTAAGAGGAACAATGATGAGAACAGGACAGAGCGGTTTCTATGTCTGCAGAATCTCTTGAAGCTCATTGATGAGTCTAATCAGGGTGAATATATCCAGATGCTTCGTTGTTTATCATCATCTGAGCTTAACAGACATGCTGTTGAGCTAGAGAAACGATCAATGCTGCTATCAGTCGAGGAAGCAAAAGAGATCCAAAGGATGAAGGCTCTAAATATTTTGGTCAAGTCCCCAATGACAAGCAATTCCCCATTGACAGTTGAGCAAGTTCAATCCAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIN52

Protein Analysis

285

Amino Acids

31.82

Weight (kDa)

9.41

Isoelectric Point (pI)

67.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000902)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38280
fragaria_vesca	FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_5g25250 FvH4_5g25250 FvH4_5g25250 FvH4_5g25250 FvH4_5g25250 FvH4_5g25250 FvH4_5g25250
malus_domestica	MD05G1134400.v1.1 MD06G1009100.v1.1 MD10G1139500.v1.1
prunus_persica	Prupe.5G011500_v2.0.a1 Prupe.8G178200_v2.0.a1 Prupe.8G178200_v2.0.a1 Prupe.8G178200_v2.0.a1 Prupe.8G178200_v2.0.a1 Prupe.8G178200_v2.0.a1 Prupe.8G178200_v2.0.a1
pyrus_communis	pycom05g13100 pycom06g00760 pycom10g11850
rosa_chinensis	RchiOBHm_Chr6g0280681 RchiOBHm_Chr7g0215391
rosa_laevigata	RLG00000002666 RLG00000013036
rosa_multiflora	Rmu_sc0000355.1_g000008 Rmu_sc0000976.1_g000009
rosa_roxburghii	Rroxscaffold_3G00244230 Rroxscaffold_7G00187760
rosa_rugosa	Rorug06G0133800 Rorug06G0133800 Rorug06G0133800 Rorug06G0133800 Rorug07G0152800 Rorug07G0152900 Rorug07G0153000 Rorug07G0153100
rosa_samantha	Rh6AG246400 Rh6BG248600 Rh6CG249900 Rh6DG241300 Rh7AG289600 Rh7BG281500 Rh7CG309200 Rh7DG293100
rosa_wichuraiana	Rw6G021320 Rw7G024740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	353
Acc36I	ACCTGC	1 cut(s)	353
AccB1I	GGYRCC	1 cut(s)	528
AccBSI	CCGCTC	1 cut(s)	607
AciI	CCGC	1 cut(s)	607
AclWI	GGATC	4 cut(s)	134, 189, 566, 760
AcsI	RAATTY	3 cut(s)	151, 297, 536
AdeI	CACNNNGTG	1 cut(s)	35
AgsI	TTSAA	3 cut(s)	302, 634, 845
AjiI	CACGTC	1 cut(s)	307
AjnI	CCWGG	3 cut(s)	460, 511, 524
AluBI	AGCT	4 cut(s)	234, 637, 700, 721
AluI	AGCT	4 cut(s)	234, 637, 700, 721
Alw21I	GWGCWC	3 cut(s)	236, 415, 520
Alw26I	GTCTC	1 cut(s)	335
Alw44I	GTGCAC	1 cut(s)	411
AlwI	GGATC	4 cut(s)	134, 189, 566, 760
ApaLI	GTGCAC	1 cut(s)	411
ApeKI	GCWGC	1 cut(s)	739
ApoI	RAATTY	3 cut(s)	151, 297, 536
AsuHPI	GGTGA	6 cut(s)	16, 45, 47, 205, 450, 671
BaeGI	GKGCMC	1 cut(s)	415
BanI	GGYRCC	1 cut(s)	528
BanII	GRGCYC	1 cut(s)	236
Bbv12I	GWGCWC	3 cut(s)	236, 415, 520
BbvI	GCAGC	1 cut(s)	726
BcgI	CGANNNNNNTGC	2 cut(s)	8, 42
BciT130I	CCWGG	3 cut(s)	462, 513, 526
BcoDI	GTCTC	1 cut(s)	335
BfaI	CTAG	5 cut(s)	12, 164, 284, 498, 722
BfmI	CTRYAG	1 cut(s)	620
BfuAI	ACCTGC	1 cut(s)	353
BisI	GCNGC	1 cut(s)	740
BlsI	GCNGC	1 cut(s)	741
Bme1390I	CCNGG	3 cut(s)	462, 513, 526
BmgBI	CACGTC	1 cut(s)	307
BmiI	GGNNCC	1 cut(s)	530
BmrFI	CCNGG	3 cut(s)	462, 513, 526
BmrI	ACTGGG	1 cut(s)	41
BmsI	GCATC	1 cut(s)	663
BmuI	ACTGGG	1 cut(s)	41
Bpu10I	CCTNAGC	1 cut(s)	219
BsaJI	CCNNGG	1 cut(s)	227
Bse1I	ACTGG	4 cut(s)	36, 202, 247, 473
Bse3DI	GCAATG	1 cut(s)	98
BseBI	CCWGG	3 cut(s)	462, 513, 526
BseDI	CCNNGG	1 cut(s)	227
BseGI	GGATG	1 cut(s)	780
BseMI	GCAATG	1 cut(s)	98
BseMII	CTCAG	2 cut(s)	210, 687
BseNI	ACTGG	4 cut(s)	36, 202, 247, 473
BseSI	GKGCMC	1 cut(s)	415
BseXI	GCAGC	1 cut(s)	726
BsgI	GTGCAG	1 cut(s)	131
BshNI	GGYRCC	1 cut(s)	528
BsiHKAI	GWGCWC	3 cut(s)	236, 415, 520
BslFI	GGGAC	1 cut(s)	787
BsmAI	GTCTC	1 cut(s)	335
BsmFI	GGGAC	1 cut(s)	787
Bsp1286I	GDGCHC	3 cut(s)	236, 415, 520
Bsp143I	GATC	6 cut(s)	126, 181, 547, 571, 731, 765
BspACI	CCGC	1 cut(s)	607
BspCNI	CTCAG	2 cut(s)	211, 688
BspLI	GGNNCC	1 cut(s)	530
BspMAI	CTGCAG	1 cut(s)	624
BspMI	ACCTGC	1 cut(s)	353
BspPI	GGATC	4 cut(s)	134, 189, 566, 760
BspT107I	GGYRCC	1 cut(s)	528
BsrBI	CCGCTC	1 cut(s)	607
BsrDI	GCAATG	1 cut(s)	98
BsrI	ACTGG	4 cut(s)	36, 202, 247, 473
BssECI	CCNNGG	1 cut(s)	227
BssMI	GATC	6 cut(s)	126, 181, 547, 571, 731, 765
Bst2UI	CCWGG	3 cut(s)	462, 513, 526
Bst4CI	ACNGT	2 cut(s)	41, 832
BstC8I	GCNNGC	2 cut(s)	279, 360
BstDEI	CTNAG	4 cut(s)	204, 219, 576, 696
BstF5I	GGATG	1 cut(s)	780
BstKTI	GATC	6 cut(s)	129, 184, 550, 574, 734, 768
BstMAI	GTCTC	1 cut(s)	335
BstMBI	GATC	6 cut(s)	126, 181, 547, 571, 731, 765
BstMWI	GCNNNNNNNGC	2 cut(s)	109, 240
BstNI	CCWGG	3 cut(s)	462, 513, 526
BstNSI	RCATGY	1 cut(s)	713
BstSCI	CCNGG	3 cut(s)	460, 511, 524
BstSFI	CTRYAG	1 cut(s)	620
BstSLI	GKGCMC	1 cut(s)	415
BstV1I	GCAGC	1 cut(s)	726
BstX2I	RGATCY	3 cut(s)	126, 181, 765
BstYI	RGATCY	3 cut(s)	126, 181, 765
BtrI	CACGTC	1 cut(s)	307
BtsCI	GGATG	1 cut(s)	780
BtsIMutI	CAGTG	3 cut(s)	29, 46, 268
BveI	ACCTGC	1 cut(s)	353
Cac8I	GCNNGC	2 cut(s)	279, 360
CseI	GACGC	2 cut(s)	212, 495
CsiI	ACCWGGT	1 cut(s)	460
CviAII	CATG	1 cut(s)	710
CviJI	RGCY	6 cut(s)	15, 234, 637, 700, 721, 782
CviKI_1	RGCY	6 cut(s)	15, 234, 637, 700, 721, 782
DdeI	CTNAG	4 cut(s)	204, 219, 576, 696
DpnI	GATC	6 cut(s)	128, 183, 549, 573, 733, 767
DpnII	GATC	6 cut(s)	126, 181, 547, 571, 731, 765
DraIII	CACNNNGTG	1 cut(s)	35
Ecl136II	GAGCTC	1 cut(s)	234
Eco24I	GRGCYC	1 cut(s)	236
Eco53kI	GAGCTC	1 cut(s)	234
EcoICRI	GAGCTC	1 cut(s)	234
EcoRI	GAATTC	1 cut(s)	297
EcoRII	CCWGG	3 cut(s)	460, 511, 524
EcoT38I	GRGCYC	1 cut(s)	236
FaeI	CATG	1 cut(s)	713
FaiI	YATR	9 cut(s)	66, 132, 134, 144, 271, 554, 616, 666, 711
FaqI	GGGAC	1 cut(s)	787
FatI	CATG	1 cut(s)	709
Fnu4HI	GCNGC	1 cut(s)	740
FokI	GGATG	1 cut(s)	787
FriOI	GRGCYC	1 cut(s)	236
Fsp4HI	GCNGC	1 cut(s)	740
FspBI	CTAG	5 cut(s)	12, 164, 284, 498, 722
GluI	GCNGC	1 cut(s)	740
HgaI	GACGC	2 cut(s)	212, 495
Hin1II	CATG	1 cut(s)	713
HinfI	GANTC	3 cut(s)	403, 625, 647
HphI	GGTGA	6 cut(s)	16, 45, 47, 205, 450, 671
Hpy166II	GTNNAC	2 cut(s)	413, 467
Hpy188I	TCNGA	2 cut(s)	231, 697
Hpy188III	TCNNGA	5 cut(s)	253, 302, 545, 631, 670
Hpy8I	GTNNAC	2 cut(s)	413, 467
Hpy99I	CGWCG	1 cut(s)	511
HpyAV	CCTTC	2 cut(s)	426, 772
HpyCH4III	ACNGT	2 cut(s)	41, 832
HpyCH4IV	ACGT	1 cut(s)	306
HpyCH4V	TGCA	5 cut(s)	29, 112, 413, 425, 622
HpyF10VI	GCNNNNNNNGC	2 cut(s)	109, 240
HpyF3I	CTNAG	4 cut(s)	204, 219, 576, 696
HpySE526I	ACGT	1 cut(s)	306
Hsp92II	CATG	1 cut(s)	713
Kzo9I	GATC	6 cut(s)	126, 181, 547, 571, 731, 765
LmnI	GCTCC	2 cut(s)	231, 239
Lsp1109I	GCAGC	1 cut(s)	726
LweI	GCATC	1 cut(s)	663
MabI	ACCWGGT	1 cut(s)	460
MaeI	CTAG	5 cut(s)	12, 164, 284, 498, 722
MaeII	ACGT	1 cut(s)	306
MaeIII	GTNAC	5 cut(s)	35, 193, 211, 307, 367
MalI	GATC	6 cut(s)	128, 183, 549, 573, 733, 767
MbiI	CCGCTC	1 cut(s)	607
MboI	GATC	6 cut(s)	126, 181, 547, 571, 731, 765
MboII	GAAGA	1 cut(s)	306
MflI	RGATCY	3 cut(s)	126, 181, 765
MhlI	GDGCHC	3 cut(s)	236, 415, 520
MluCI	AATT	6 cut(s)	49, 151, 297, 334, 536, 817
MlyI	GAGTC	2 cut(s)	412, 656
MnlI	CCTC	4 cut(s)	26, 237, 573, 745
MseI	TTAA	5 cut(s)	48, 80, 189, 534, 702
MspR9I	CCNGG	3 cut(s)	462, 513, 526
MvaI	CCWGG	3 cut(s)	462, 513, 526
MwoI	GCNNNNNNNGC	2 cut(s)	109, 240
NdeII	GATC	6 cut(s)	126, 181, 547, 571, 731, 765
NlaIII	CATG	1 cut(s)	713
NlaIV	GGNNCC	1 cut(s)	530
NmuCI	GTSAC	3 cut(s)	35, 211, 307
NspI	RCATGY	1 cut(s)	713
PaqCI	CACCTGC	1 cut(s)	353
PfeI	GAWTC	1 cut(s)	625
PkrI	GCNGC	1 cut(s)	741
PleI	GAGTC	2 cut(s)	411, 655
PpsI	GAGTC	2 cut(s)	411, 655
Psp124BI	GAGCTC	1 cut(s)	236
Psp6I	CCWGG	3 cut(s)	460, 511, 524
PspGI	CCWGG	3 cut(s)	460, 511, 524
PspN4I	GGNNCC	1 cut(s)	530
PstI	CTGCAG	1 cut(s)	624
PsuI	RGATCY	3 cut(s)	126, 181, 765
SacI	GAGCTC	1 cut(s)	236
SaqAI	TTAA	5 cut(s)	48, 80, 189, 534, 702
SatI	GCNGC	1 cut(s)	740
Sau3AI	GATC	6 cut(s)	126, 181, 547, 571, 731, 765
SchI	GAGTC	2 cut(s)	412, 656
ScrFI	CCNGG	3 cut(s)	462, 513, 526
SduI	GDGCHC	3 cut(s)	236, 415, 520
SexAI	ACCWGGT	1 cut(s)	460
SfaNI	GCATC	1 cut(s)	663
SfcI	CTRYAG	1 cut(s)	620
Sse9I	AATT	6 cut(s)	49, 151, 297, 334, 536, 817
SsiI	CCGC	1 cut(s)	607
SspI	AATATT	1 cut(s)	790
SspMI	CTAG	5 cut(s)	12, 164, 284, 498, 722
SstI	GAGCTC	1 cut(s)	236
StyD4I	CCNGG	3 cut(s)	460, 511, 524
TaaI	ACNGT	2 cut(s)	41, 832
TaiI	ACGT	1 cut(s)	309
TaqI	TCGA	3 cut(s)	18, 254, 750
TasI	AATT	6 cut(s)	49, 151, 297, 334, 536, 817
TfiI	GAWTC	1 cut(s)	625
Tru1I	TTAA	5 cut(s)	48, 80, 189, 534, 702
Tru9I	TTAA	5 cut(s)	48, 80, 189, 534, 702
TscAI	CASTG	3 cut(s)	36, 46, 268
TseFI	GTSAC	3 cut(s)	35, 211, 307
TseI	GCWGC	1 cut(s)	739
Tsp45I	GTSAC	3 cut(s)	35, 211, 307
TspDTI	ATGAA	3 cut(s)	101, 408, 791
TspRI	CASTG	3 cut(s)	36, 46, 268
VneI	GTGCAC	1 cut(s)	411
XapI	RAATTY	3 cut(s)	151, 297, 536
XceI	RCATGY	1 cut(s)	713
XspI	CTAG	5 cut(s)	12, 164, 284, 498, 722

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.