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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 3 cut(s) | 218, 857, 1079 |
| AccIII | TCCGGA | 1 cut(s) | 1193 |
| AciI | CCGC | 2 cut(s) | 1603, 1637 |
| AclWI | GGATC | 5 cut(s) | 244, 989, 1002, 1446, 1459 |
| AcsI | RAATTY | 1 cut(s) | 138 |
| AfaI | GTAC | 3 cut(s) | 280, 346, 975 |
| AgsI | TTSAA | 8 cut(s) | 178, 499, 610, 1500, 1622, 1693, 1711, 1760 |
| AjnI | CCWGG | 1 cut(s) | 1390 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 27, 59 |
| AluBI | AGCT | 5 cut(s) | 165, 326, 1376, 1543, 1666 |
| AluI | AGCT | 5 cut(s) | 165, 326, 1376, 1543, 1666 |
| Alw21I | GWGCWC | 2 cut(s) | 167, 1444 |
| Alw26I | GTCTC | 1 cut(s) | 623 |
| AlwI | GGATC | 5 cut(s) | 244, 989, 1002, 1446, 1459 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 95, 326 |
| Aor13HI | TCCGGA | 1 cut(s) | 1193 |
| AoxI | GGCC | 2 cut(s) | 57, 418 |
| ApeKI | GCWGC | 7 cut(s) | 969, 1184, 1302, 1376, 1379, 1543, 1600 |
| ApoI | RAATTY | 1 cut(s) | 138 |
| AseI | ATTAAT | 7 cut(s) | 366, 477, 699, 810, 921, 1032, 1143 |
| AspS9I | GGNCC | 5 cut(s) | 419, 863, 1085, 1196, 1567 |
| AsuC2I | CCSGG | 1 cut(s) | 150 |
| AsuHPI | GGTGA | 2 cut(s) | 500, 611 |
| AvaII | GGWCC | 4 cut(s) | 863, 1085, 1196, 1567 |
| BaeGI | GKGCMC | 2 cut(s) | 150, 1749 |
| BamHI | GGATCC | 2 cut(s) | 994, 1451 |
| BanI | GGYRCC | 3 cut(s) | 218, 857, 1079 |
| BanII | GRGCYC | 1 cut(s) | 167 |
| BbsI | GAAGAC | 1 cut(s) | 110 |
| Bbv12I | GWGCWC | 2 cut(s) | 167, 1444 |
| BbvCI | CCTCAGC | 1 cut(s) | 54 |
| BbvI | GCAGC | 7 cut(s) | 981, 1196, 1314, 1363, 1391, 1530, 1587 |
| BccI | CCATC | 6 cut(s) | 368, 479, 590, 701, 1391, 1408 |
| BciT130I | CCWGG | 1 cut(s) | 1392 |
| BciVI | GTATCC | 1 cut(s) | 1213 |
| BcnI | CCSGG | 1 cut(s) | 150 |
| BcoDI | GTCTC | 1 cut(s) | 623 |
| BfaI | CTAG | 2 cut(s) | 207, 1673 |
| BfmI | CTRYAG | 2 cut(s) | 1377, 1544 |
| BfuI | GTATCC | 1 cut(s) | 1213 |
| BglII | AGATCT | 1 cut(s) | 1766 |
| BisI | GCNGC | 7 cut(s) | 970, 1185, 1303, 1377, 1380, 1544, 1601 |
| BlsI | GCNGC | 7 cut(s) | 971, 1186, 1304, 1378, 1381, 1545, 1602 |
| BmcAI | AGTACT | 2 cut(s) | 280, 346 |
| Bme1390I | CCNGG | 2 cut(s) | 150, 1392 |
| Bme18I | GGWCC | 4 cut(s) | 863, 1085, 1196, 1567 |
| BmgT120I | GGNCC | 5 cut(s) | 419, 863, 1085, 1196, 1567 |
| BmrFI | CCNGG | 2 cut(s) | 150, 1392 |
| BmrI | ACTGGG | 1 cut(s) | 267 |
| BmsI | GCATC | 5 cut(s) | 304, 319, 392, 725, 1587 |
| BmuI | ACTGGG | 1 cut(s) | 267 |
| BpiI | GAAGAC | 1 cut(s) | 110 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 154, 186 |
| Bpu10I | CCTNAGC | 1 cut(s) | 54 |
| BpuEI | CTTGAG | 1 cut(s) | 1577 |
| BpuMI | CCSGG | 1 cut(s) | 150 |
| BsaJI | CCNNGG | 2 cut(s) | 1367, 1614 |
| BsaWI | WCCGGW | 3 cut(s) | 860, 1082, 1193 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 522, 552 |
| Bse118I | RCCGGY | 1 cut(s) | 416 |
| Bse1I | ACTGG | 2 cut(s) | 143, 273 |
| Bse3DI | GCAATG | 1 cut(s) | 961 |
| BseAI | TCCGGA | 1 cut(s) | 1193 |
| BseBI | CCWGG | 1 cut(s) | 1392 |
| BseDI | CCNNGG | 2 cut(s) | 1367, 1614 |
| BseGI | GGATG | 1 cut(s) | 1383 |
| BseMI | GCAATG | 1 cut(s) | 961 |
| BseMII | CTCAG | 3 cut(s) | 45, 228, 1761 |
| BseNI | ACTGG | 2 cut(s) | 143, 273 |
| BseRI | GAGGAG | 2 cut(s) | 1452, 1603 |
| BseSI | GKGCMC | 2 cut(s) | 150, 1749 |
| BseXI | GCAGC | 7 cut(s) | 981, 1196, 1314, 1363, 1391, 1530, 1587 |
| BseYI | CCCAGC | 1 cut(s) | 158 |
| Bsh1285I | CGRYCG | 1 cut(s) | 755 |
| BshFI | GGCC | 2 cut(s) | 59, 420 |
| BshNI | GGYRCC | 3 cut(s) | 218, 857, 1079 |
| BsiEI | CGRYCG | 1 cut(s) | 755 |
| BsiHKAI | GWGCWC | 2 cut(s) | 167, 1444 |
| BsiSI | CCGG | 6 cut(s) | 150, 417, 861, 1083, 1194, 1349 |
| BslFI | GGGAC | 1 cut(s) | 1518 |
| BsmAI | GTCTC | 1 cut(s) | 623 |
| BsmFI | GGGAC | 1 cut(s) | 1518 |
| BsnI | GGCC | 2 cut(s) | 59, 420 |
| Bsp1286I | GDGCHC | 4 cut(s) | 150, 167, 1444, 1749 |
| Bsp13I | TCCGGA | 1 cut(s) | 1193 |
| Bsp143I | GATC | 5 cut(s) | 249, 994, 1451, 1655, 1766 |
| BspACI | CCGC | 2 cut(s) | 1603, 1637 |
| BspANI | GGCC | 2 cut(s) | 59, 420 |
| BspCNI | CTCAG | 3 cut(s) | 46, 229, 1762 |
| BspEI | TCCGGA | 1 cut(s) | 1193 |
| BspHI | TCATGA | 1 cut(s) | 73 |
| BspMAI | CTGCAG | 2 cut(s) | 1381, 1548 |
| BspPI | GGATC | 5 cut(s) | 244, 989, 1002, 1446, 1459 |
| BspQI | GCTCTTC | 1 cut(s) | 172 |
| BspT107I | GGYRCC | 3 cut(s) | 218, 857, 1079 |
| BsrDI | GCAATG | 1 cut(s) | 961 |
| BsrFI | RCCGGY | 1 cut(s) | 416 |
| BsrI | ACTGG | 2 cut(s) | 143, 273 |
| BssAI | RCCGGY | 1 cut(s) | 416 |
| BssECI | CCNNGG | 2 cut(s) | 1367, 1614 |
| BssMI | GATC | 5 cut(s) | 249, 994, 1451, 1655, 1766 |
| BssT1I | CCWWGG | 1 cut(s) | 1367 |
| Bst2UI | CCWGG | 1 cut(s) | 1392 |
| Bst6I | CTCTTC | 4 cut(s) | 172, 954, 1521, 1761 |
| BstDEI | CTNAG | 8 cut(s) | 54, 237, 395, 728, 950, 1323, 1625, 1770 |
| BstF5I | GGATG | 1 cut(s) | 1383 |
| BstKTI | GATC | 5 cut(s) | 252, 997, 1454, 1658, 1769 |
| BstMAI | GTCTC | 1 cut(s) | 623 |
| BstMBI | GATC | 5 cut(s) | 249, 994, 1451, 1655, 1766 |
| BstMCI | CGRYCG | 1 cut(s) | 755 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1549 |
| BstNI | CCWGG | 1 cut(s) | 1392 |
| BstNSI | RCATGY | 1 cut(s) | 1637 |
| BstSCI | CCNGG | 2 cut(s) | 148, 1390 |
| BstSFI | CTRYAG | 2 cut(s) | 1377, 1544 |
| BstSLI | GKGCMC | 2 cut(s) | 150, 1749 |
| BstV1I | GCAGC | 7 cut(s) | 981, 1196, 1314, 1363, 1391, 1530, 1587 |
| BstV2I | GAAGAC | 1 cut(s) | 110 |
| BstX2I | RGATCY | 3 cut(s) | 994, 1451, 1766 |
| BstYI | RGATCY | 3 cut(s) | 994, 1451, 1766 |
| BsuI | GTATCC | 1 cut(s) | 1213 |
| BsuRI | GGCC | 2 cut(s) | 59, 420 |
| BtsCI | GGATG | 1 cut(s) | 1383 |
| BtsIMutI | CAGTG | 4 cut(s) | 150, 460, 571, 793 |
| CaiI | CAGNNNCTG | 2 cut(s) | 95, 326 |
| CciI | TCATGA | 1 cut(s) | 73 |
| Cfr10I | RCCGGY | 1 cut(s) | 416 |
| Cfr13I | GGNCC | 5 cut(s) | 419, 863, 1085, 1196, 1567 |
| Csp6I | GTAC | 3 cut(s) | 279, 345, 974 |
| CviAII | CATG | 3 cut(s) | 74, 1580, 1634 |
| CviQI | GTAC | 3 cut(s) | 279, 345, 974 |
| DdeI | CTNAG | 8 cut(s) | 54, 237, 395, 728, 950, 1323, 1625, 1770 |
| DpnI | GATC | 5 cut(s) | 251, 996, 1453, 1657, 1768 |
| DpnII | GATC | 5 cut(s) | 249, 994, 1451, 1655, 1766 |
| DraI | TTTAAA | 1 cut(s) | 1741 |
| Eam1104I | CTCTTC | 4 cut(s) | 172, 954, 1521, 1761 |
| EarI | CTCTTC | 4 cut(s) | 172, 954, 1521, 1761 |
| Ecl136II | GAGCTC | 1 cut(s) | 165 |
| Eco130I | CCWWGG | 1 cut(s) | 1367 |
| Eco24I | GRGCYC | 1 cut(s) | 167 |
| Eco32I | GATATC | 4 cut(s) | 426, 648, 759, 981 |
| Eco47I | GGWCC | 4 cut(s) | 863, 1085, 1196, 1567 |
| Eco53kI | GAGCTC | 1 cut(s) | 165 |
| EcoICRI | GAGCTC | 1 cut(s) | 165 |
| EcoRI | GAATTC | 1 cut(s) | 138 |
| EcoRII | CCWGG | 1 cut(s) | 1390 |
| EcoRV | GATATC | 4 cut(s) | 426, 648, 759, 981 |
| EcoT14I | CCWWGG | 1 cut(s) | 1367 |
| EcoT38I | GRGCYC | 1 cut(s) | 167 |
| ErhI | CCWWGG | 1 cut(s) | 1367 |
| FaeI | CATG | 3 cut(s) | 77, 1583, 1637 |
| FaqI | GGGAC | 1 cut(s) | 1518 |
| FatI | CATG | 3 cut(s) | 73, 1579, 1633 |
| Fnu4HI | GCNGC | 7 cut(s) | 970, 1185, 1303, 1377, 1380, 1544, 1601 |
| FokI | GGATG | 1 cut(s) | 1370 |
| FriOI | GRGCYC | 1 cut(s) | 167 |
| Fsp4HI | GCNGC | 7 cut(s) | 970, 1185, 1303, 1377, 1380, 1544, 1601 |
| FspBI | CTAG | 2 cut(s) | 207, 1673 |
| GluI | GCNGC | 7 cut(s) | 970, 1185, 1303, 1377, 1380, 1544, 1601 |
| GsaI | CCCAGC | 1 cut(s) | 162 |
| HaeIII | GGCC | 2 cut(s) | 59, 420 |
| HapII | CCGG | 6 cut(s) | 150, 417, 861, 1083, 1194, 1349 |
| Hin1II | CATG | 3 cut(s) | 77, 1583, 1637 |
| HincII | GTYRAC | 1 cut(s) | 1174 |
| HindII | GTYRAC | 1 cut(s) | 1174 |
| HinfI | GANTC | 1 cut(s) | 20 |
| HpaI | GTTAAC | 1 cut(s) | 1174 |
| HpaII | CCGG | 6 cut(s) | 150, 417, 861, 1083, 1194, 1349 |
| HphI | GGTGA | 2 cut(s) | 500, 611 |
| Hpy166II | GTNNAC | 5 cut(s) | 451, 562, 784, 1011, 1174 |
| Hpy188I | TCNGA | 6 cut(s) | 238, 322, 338, 1429, 1576, 1771 |
| Hpy188III | TCNNGA | 5 cut(s) | 74, 257, 1194, 1594, 1760 |
| Hpy8I | GTNNAC | 5 cut(s) | 451, 562, 784, 1011, 1174 |
| HpyAV | CCTTC | 2 cut(s) | 172, 1494 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1549 |
| HpyF3I | CTNAG | 8 cut(s) | 54, 237, 395, 728, 950, 1323, 1625, 1770 |
| Hsp92II | CATG | 3 cut(s) | 77, 1583, 1637 |
| Kpn2I | TCCGGA | 1 cut(s) | 1193 |
| KspAI | GTTAAC | 1 cut(s) | 1174 |
| Kzo9I | GATC | 5 cut(s) | 249, 994, 1451, 1655, 1766 |
| LguI | GCTCTTC | 1 cut(s) | 172 |
| Lsp1109I | GCAGC | 7 cut(s) | 981, 1196, 1314, 1363, 1391, 1530, 1587 |
| LweI | GCATC | 5 cut(s) | 304, 319, 392, 725, 1587 |
| MaeI | CTAG | 2 cut(s) | 207, 1673 |
| MaeIII | GTNAC | 1 cut(s) | 1605 |
| MalI | GATC | 5 cut(s) | 251, 996, 1453, 1657, 1768 |
| MboI | GATC | 5 cut(s) | 249, 994, 1451, 1655, 1766 |
| MboII | GAAGA | 7 cut(s) | 115, 159, 511, 622, 971, 1538, 1748 |
| MfeI | CAATTG | 1 cut(s) | 928 |
| MflI | RGATCY | 3 cut(s) | 994, 1451, 1766 |
| MhlI | GDGCHC | 4 cut(s) | 150, 167, 1444, 1749 |
| MluCI | AATT | 9 cut(s) | 138, 199, 504, 615, 837, 928, 1140, 1562, 1659 |
| MmeI | TCCRAC | 1 cut(s) | 1626 |
| MroI | TCCGGA | 1 cut(s) | 1193 |
| MspA1I | CMGCKG | 1 cut(s) | 1543 |
| MspI | CCGG | 6 cut(s) | 150, 417, 861, 1083, 1194, 1349 |
| MspR9I | CCNGG | 2 cut(s) | 150, 1392 |
| MunI | CAATTG | 1 cut(s) | 928 |
| MvaI | CCWGG | 1 cut(s) | 1392 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1549 |
| NciI | CCSGG | 1 cut(s) | 150 |
| NdeII | GATC | 5 cut(s) | 249, 994, 1451, 1655, 1766 |
| NlaIII | CATG | 3 cut(s) | 77, 1583, 1637 |
| NmeAIII | GCCGAG | 1 cut(s) | 85 |
| NmuCI | GTSAC | 1 cut(s) | 1605 |
| NspI | RCATGY | 1 cut(s) | 1637 |
| PagI | TCATGA | 1 cut(s) | 73 |
| PciSI | GCTCTTC | 1 cut(s) | 172 |
| PfeI | GAWTC | 1 cut(s) | 20 |
| PfoI | TCCNGGA | 1 cut(s) | 1390 |
| PkrI | GCNGC | 7 cut(s) | 971, 1186, 1304, 1378, 1381, 1545, 1602 |
| PshBI | ATTAAT | 7 cut(s) | 366, 477, 699, 810, 921, 1032, 1143 |
| Psp124BI | GAGCTC | 1 cut(s) | 167 |
| Psp6I | CCWGG | 1 cut(s) | 1390 |
| PspFI | CCCAGC | 1 cut(s) | 158 |
| PspGI | CCWGG | 1 cut(s) | 1390 |
| PspPI | GGNCC | 5 cut(s) | 419, 863, 1085, 1196, 1567 |
| PstI | CTGCAG | 2 cut(s) | 1381, 1548 |
| PstNI | CAGNNNCTG | 2 cut(s) | 95, 326 |
| PsuI | RGATCY | 3 cut(s) | 994, 1451, 1766 |
| PvuII | CAGCTG | 1 cut(s) | 1543 |
| RsaI | GTAC | 3 cut(s) | 280, 346, 975 |
| RsaNI | GTAC | 3 cut(s) | 279, 345, 974 |
| SacI | GAGCTC | 1 cut(s) | 167 |
| SapI | GCTCTTC | 1 cut(s) | 172 |
| SatI | GCNGC | 7 cut(s) | 970, 1185, 1303, 1377, 1380, 1544, 1601 |
| Sau3AI | GATC | 5 cut(s) | 249, 994, 1451, 1655, 1766 |
| Sau96I | GGNCC | 5 cut(s) | 419, 863, 1085, 1196, 1567 |
| ScaI | AGTACT | 2 cut(s) | 280, 346 |
| ScrFI | CCNGG | 2 cut(s) | 150, 1392 |
| SduI | GDGCHC | 4 cut(s) | 150, 167, 1444, 1749 |
| SfaNI | GCATC | 5 cut(s) | 304, 319, 392, 725, 1587 |
| SfcI | CTRYAG | 2 cut(s) | 1377, 1544 |
| SinI | GGWCC | 4 cut(s) | 863, 1085, 1196, 1567 |
| SmlI | CTYRAG | 1 cut(s) | 1592 |
| SmoI | CTYRAG | 1 cut(s) | 1592 |
| Sse9I | AATT | 9 cut(s) | 138, 199, 504, 615, 837, 928, 1140, 1562, 1659 |
| SsiI | CCGC | 2 cut(s) | 1603, 1637 |
| SspMI | CTAG | 2 cut(s) | 207, 1673 |
| SstI | GAGCTC | 1 cut(s) | 167 |
| StyD4I | CCNGG | 2 cut(s) | 148, 1390 |
| StyI | CCWWGG | 1 cut(s) | 1367 |
| TaqI | TCGA | 3 cut(s) | 386, 719, 1052 |
| TaqII | GACCGA | 1 cut(s) | 769 |
| TasI | AATT | 9 cut(s) | 138, 199, 504, 615, 837, 928, 1140, 1562, 1659 |
| TatI | WGTACW | 2 cut(s) | 278, 344 |
| TfiI | GAWTC | 1 cut(s) | 20 |
| TscAI | CASTG | 4 cut(s) | 150, 460, 571, 793 |
| TseFI | GTSAC | 1 cut(s) | 1605 |
| TseI | GCWGC | 7 cut(s) | 969, 1184, 1302, 1376, 1379, 1543, 1600 |
| Tsp45I | GTSAC | 1 cut(s) | 1605 |
| TspRI | CASTG | 4 cut(s) | 150, 460, 571, 793 |
| VpaK11BI | GGWCC | 4 cut(s) | 863, 1085, 1196, 1567 |
| VspI | ATTAAT | 7 cut(s) | 366, 477, 699, 810, 921, 1032, 1143 |
| XapI | RAATTY | 1 cut(s) | 138 |
| XceI | RCATGY | 1 cut(s) | 1637 |
| XspI | CTAG | 2 cut(s) | 207, 1673 |
| ZrmI | AGTACT | 2 cut(s) | 280, 346 |