FvH4_2g16620

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000902
Physical Location & Seq
Forward (+)
14492923 .. 14497668
4746 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g16620.t10

Sequence Viewer

Length: 1998 bp
ATGGTTCAGCATACCATAGATTCTAAAACCAATGAATATGGGCTTGGAACTACTGAAGCCGAGTCATCTATTCATGATAAGCAGTTATCAGCTCCTGTAAAGAATACAGTTTTAAGAGATGTACAAAATGACAATAAAATTGCAGTGCCCAGCTCTGCCGCGAGCTCTTCTCCATCAAAGGATAAGATACCTAATACTGCCCCTAGAGTTTCTGGCATCAAAAGACCTTTATCTGAGTGCCAGACGATCCCTTCTGAACAGCAACCCCCCAGTAGTAGTTCTGGAAATGGGCCTCTTGTCTATGTTCGTAGGAAATCAGAAGCTGACACAGTCAGAAGTAGCACTAATGATAATGCAAGCATTATTGCTGGTGGTCAAGTGTCGAGGAAACTTAGCAACCAAGAGGCAAGGACTGGACCAATATCCCAAACAAAGGAGCCGACAGTAAAGAGTGCTAATGGTAATGGAAATATTAATGCTGATGGTCATGTGTCGAGGAAACTTAGCAACCAAGAGGCAAGCACTGGACCAATATCCCAAAAAAAGGAGCCAACAATTCAGAGTGCTAATGATAATGGAAAGATTAATGCTGATTGTGAACTGTCGGGGATAATTAGCCATCAAGAGGCAGGCACCGGACCCATATCCCAAACAAAGGAGCCAGAAGTTCGCGGTGCTAATGATAATACAAACATTAACGCTGATTGTGAGGTGTCAAAGAGAATTAGCCACCAAGAGGCAGGCACTGGACACATATCCCAAACAAAGGAGCCAGAAGTTTGCGGTGCTAATGATAATGCAAACATTAATGCTGATTGTGAGGTGTCGAAGAGAATTAGCCACCAAGAGGCAGGCACCGGACACATATCCCAAACAAAGGAGCCAGAAGTTTGCGGTGCTAATGATAATGCAAACATTAATGCTGATTGTGAGGTGTCGAAGAGAATTAGCCACCATGAGGCAGGCTCCGGACACATATCCCAAACAAAGGAGCCAGTAGTTCATAGTGCTAATGATAATGCAAATATTACAGCTGATCGTGAGGTGTCAAGGAGCATTAGCCACCAAGAGGCAGGCATGGGACCAATATCCCAAACAAAGGAGCCAGAAGTTCATTGTGCTAATAAAAATGCAAGCAATAATGCTGATTTTCAGGTGTCAACAAAACTTAGCAATCAAGAAGCAAGCACCGGACTGATATCCCAAAGAAAGGAGCCGGAATTTCATTTTACTAATGATAGTGCAAGCATAAATGCTGATTGTGAGGCCTCGAGGATAATTAGCCACCAAGAGGCAGGCACTGGACCTATATCCCAAACGAAGGAGCCAAAACCAAGTTGTGCTAATGATAGTGCAAGTTCTAAAGCTGATTGTGAGGTATTGAGGATAGTTAGCCCCCAAGAGGCAGGCACCGGACCCATATCCCAAACAAAGGAGCCAAAAGTTCATTTTGCTAACGATAATGCAAGCATTAAGGCTGACTGTCAGGTATTGAGGGCAAATAGCCACCAAGATGCAAGCACCAGACCCATATCCCAATCAAAAGAGCCAACAAGTCACGGCGTTTCGGCGTTTGCACCTTTTCCAAGGGAAGCAGCAGCCATCCCTCCTGGAAAACCTTCCGTTGCTCCGCCACACGGTAAATCTGATGTAAGAGGGGCACCAGCAGGATCCAATTCCCAACCTCTTGTTTCTGCTACCCCTTCATCGGGTAGTTCAAAGGGTCTCAGAAATTTGCATTGGGAAGAGAGGTTTCATCAACTGCAGTTGCTATTGAGAAAATTGGACCAATCAGACCACGAGGATTATCTCAAGATGCTGCGGTCTCTCTCCTCTGTTGAACTAAGCAGACATGCCGTTGAGTTGGAAAAGAGATCAATTCAGCTTTCACTGGAGGAAGCAAAAGAGTTGAAGCGAGTTGGGGTTTTGAATGTTCTGGGAAAACCTGTGAAGCCTTTTAAAGTACCCTCAACTCTTCAAGACAAATCTGAGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LIN52

Protein Analysis

666

Amino Acids

70.92

Weight (kDa)

6.49

Isoelectric Point (pI)

47.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 1270
AccB1I GGYRCC 4 cut(s) 632, 854, 1409, 1660
AccII CGCG 2 cut(s) 161, 672
AccIII TCCGGA 1 cut(s) 968
AciI CCGC 6 cut(s) 159, 672, 783, 894, 1631, 1822
AclWI GGATC 3 cut(s) 241, 1665, 1678
AcsI RAATTY 2 cut(s) 1220, 1732
AcuI CTGAAG 1 cut(s) 75
AfaI GTAC 2 cut(s) 123, 1965
AgsI TTSAA 5 cut(s) 1719, 1841, 1912, 1930, 1979
AjnI CCWGG 1 cut(s) 1609
AjuI GAANNNNNNNTTGG 4 cut(s) 27, 59, 1723, 1755
AluBI AGCT 7 cut(s) 92, 153, 165, 323, 1034, 1367, 1885
AluI AGCT 7 cut(s) 92, 153, 165, 323, 1034, 1367, 1885
Alw21I GWGCWC 1 cut(s) 167
Alw26I GTCTC 2 cut(s) 1730, 1830
AlwI GGATC 3 cut(s) 241, 1665, 1678
AlwNI CAGNNNCTG 4 cut(s) 95, 323, 746, 1301
Ama87I CYCGRG 1 cut(s) 1270
Aor13HI TCCGGA 1 cut(s) 968
AoxI GGCC 2 cut(s) 290, 1266
ApeKI GCWGC 3 cut(s) 1595, 1598, 1819
ApoI RAATTY 2 cut(s) 1220, 1732
AseI ATTAAT 4 cut(s) 474, 585, 807, 918
Asp700I GAANNNNTTC 1 cut(s) 1618
AspS9I GGNCC 8 cut(s) 290, 416, 527, 638, 1082, 1304, 1415, 1786
AvaI CYCGRG 1 cut(s) 1270
AvaII GGWCC 7 cut(s) 416, 527, 638, 1082, 1304, 1415, 1786
BaeGI GKGCMC 2 cut(s) 150, 1663
BamHI GGATCC 1 cut(s) 1670
BanI GGYRCC 4 cut(s) 632, 854, 1409, 1660
BanII GRGCYC 1 cut(s) 167
BauI CACGAG 1 cut(s) 1799
Bbv12I GWGCWC 1 cut(s) 167
BbvI GCAGC 3 cut(s) 1607, 1610, 1806
BccI CCATC 4 cut(s) 181, 476, 627, 1610
BceAI ACGGC 2 cut(s) 1576, 1841
BciT130I CCWGG 1 cut(s) 1611
BcoDI GTCTC 2 cut(s) 1730, 1830
BfaI CTAG 1 cut(s) 204
BfmI CTRYAG 1 cut(s) 1763
BisI GCNGC 4 cut(s) 159, 1596, 1599, 1820
BlsI GCNGC 4 cut(s) 160, 1597, 1600, 1821
Bme1390I CCNGG 1 cut(s) 1611
Bme18I GGWCC 7 cut(s) 416, 527, 638, 1082, 1304, 1415, 1786
BmeT110I CYCGRG 1 cut(s) 1270
BmgT120I GGNCC 8 cut(s) 290, 416, 527, 638, 1082, 1304, 1415, 1786
BmrFI CCNGG 1 cut(s) 1611
BmrI ACTGGG 1 cut(s) 264
BmsI GCATC 3 cut(s) 225, 1504, 1806
BmuI ACTGGG 1 cut(s) 264
BplI GAGNNNNNCTC 4 cut(s) 154, 186, 950, 982
BpmI CTGGAG 1 cut(s) 1913
BpuEI CTTGAG 1 cut(s) 1796
BsaI GGTCTC 2 cut(s) 1730, 1830
BsaJI CCNNGG 1 cut(s) 1586
BsaWI WCCGGW 5 cut(s) 635, 857, 968, 1190, 1412
Bse1I ACTGG 7 cut(s) 270, 418, 529, 751, 995, 1306, 1896
BseAI TCCGGA 1 cut(s) 968
BseBI CCWGG 1 cut(s) 1611
BseDI CCNNGG 1 cut(s) 1586
BseGI GGATG 1 cut(s) 1602
BseMII CTCAG 3 cut(s) 225, 1741, 1980
BseNI ACTGG 7 cut(s) 270, 418, 529, 751, 995, 1306, 1896
BseRI GAGGAG 1 cut(s) 1822
BseSI GKGCMC 2 cut(s) 150, 1663
BseXI GCAGC 3 cut(s) 1607, 1610, 1806
BseYI CCCAGC 1 cut(s) 149
Bsh1236I CGCG 2 cut(s) 161, 672
BshFI GGCC 2 cut(s) 292, 1268
BshNI GGYRCC 4 cut(s) 632, 854, 1409, 1660
BsiHKAI GWGCWC 1 cut(s) 167
BsiHKCI CYCGRG 1 cut(s) 1270
BsiSI CCGG 6 cut(s) 636, 858, 969, 1191, 1217, 1413
BslFI GGGAC 1 cut(s) 1095
BsmAI GTCTC 2 cut(s) 1730, 1830
BsmFI GGGAC 1 cut(s) 1095
BsnI GGCC 2 cut(s) 292, 1268
Bso31I GGTCTC 2 cut(s) 1730, 1830
BsoBI CYCGRG 1 cut(s) 1270
Bsp1286I GDGCHC 3 cut(s) 150, 167, 1663
Bsp13I TCCGGA 1 cut(s) 968
Bsp1407I TGTACA 1 cut(s) 121
Bsp143I GATC 4 cut(s) 246, 1036, 1670, 1874
BspACI CCGC 6 cut(s) 159, 672, 783, 894, 1631, 1822
BspANI GGCC 2 cut(s) 292, 1268
BspCNI CTCAG 3 cut(s) 226, 1740, 1981
BspEI TCCGGA 1 cut(s) 968
BspFNI CGCG 2 cut(s) 161, 672
BspHI TCATGA 1 cut(s) 73
BspMAI CTGCAG 1 cut(s) 1767
BspPI GGATC 3 cut(s) 241, 1665, 1678
BspQI GCTCTTC 1 cut(s) 172
BspT107I GGYRCC 4 cut(s) 632, 854, 1409, 1660
BspTNI GGTCTC 2 cut(s) 1730, 1830
BsrGI TGTACA 1 cut(s) 121
BsrI ACTGG 7 cut(s) 270, 418, 529, 751, 995, 1306, 1896
BssECI CCNNGG 1 cut(s) 1586
BssMI GATC 4 cut(s) 246, 1036, 1670, 1874
BssSI CACGAG 1 cut(s) 1799
BssT1I CCWWGG 1 cut(s) 1586
Bst2BI CACGAG 1 cut(s) 1799
Bst2UI CCWGG 1 cut(s) 1611
Bst4CI ACNGT 6 cut(s) 109, 331, 445, 603, 1484, 1640
Bst6I CTCTTC 5 cut(s) 172, 824, 935, 1740, 1980
BstAUI TGTACA 1 cut(s) 121
BstDEI CTNAG 7 cut(s) 234, 392, 503, 1169, 1727, 1844, 1989
BstF5I GGATG 1 cut(s) 1602
BstFNI CGCG 2 cut(s) 161, 672
BstKTI GATC 4 cut(s) 249, 1039, 1673, 1877
BstMAI GTCTC 2 cut(s) 1730, 1830
BstMBI GATC 4 cut(s) 246, 1036, 1670, 1874
BstNI CCWGG 1 cut(s) 1611
BstNSI RCATGY 1 cut(s) 1856
BstSCI CCNGG 1 cut(s) 1609
BstSFI CTRYAG 1 cut(s) 1763
BstSLI GKGCMC 2 cut(s) 150, 1663
BstUI CGCG 2 cut(s) 161, 672
BstV1I GCAGC 3 cut(s) 1607, 1610, 1806
BstX2I RGATCY 1 cut(s) 1670
BstYI RGATCY 1 cut(s) 1670
BsuRI GGCC 2 cut(s) 292, 1268
BtsCI GGATG 1 cut(s) 1602
BtsI GCAGTG 1 cut(s) 150
BtsIMutI CAGTG 5 cut(s) 150, 522, 744, 1299, 1889
CaiI CAGNNNCTG 4 cut(s) 95, 323, 746, 1301
CciI TCATGA 1 cut(s) 73
Cfr13I GGNCC 8 cut(s) 290, 416, 527, 638, 1082, 1304, 1415, 1786
Csp6I GTAC 2 cut(s) 122, 1964
CviAII CATG 5 cut(s) 74, 488, 956, 1078, 1853
CviQI GTAC 2 cut(s) 122, 1964
DdeI CTNAG 7 cut(s) 234, 392, 503, 1169, 1727, 1844, 1989
DpnI GATC 4 cut(s) 248, 1038, 1672, 1876
DpnII GATC 4 cut(s) 246, 1036, 1670, 1874
DraI TTTAAA 1 cut(s) 1960
Eam1104I CTCTTC 5 cut(s) 172, 824, 935, 1740, 1980
EarI CTCTTC 5 cut(s) 172, 824, 935, 1740, 1980
EciI GGCGGA 1 cut(s) 1620
Ecl136II GAGCTC 1 cut(s) 165
Eco130I CCWWGG 1 cut(s) 1586
Eco147I AGGCCT 1 cut(s) 1268
Eco24I GRGCYC 1 cut(s) 167
Eco31I GGTCTC 2 cut(s) 1730, 1830
Eco32I GATATC 1 cut(s) 1200
Eco47I GGWCC 7 cut(s) 416, 527, 638, 1082, 1304, 1415, 1786
Eco53kI GAGCTC 1 cut(s) 165
Eco57I CTGAAG 1 cut(s) 75
Eco88I CYCGRG 1 cut(s) 1270
EcoICRI GAGCTC 1 cut(s) 165
EcoRII CCWGG 1 cut(s) 1609
EcoRV GATATC 1 cut(s) 1200
EcoT14I CCWWGG 1 cut(s) 1586
EcoT38I GRGCYC 1 cut(s) 167
ErhI CCWWGG 1 cut(s) 1586
FaeI CATG 5 cut(s) 77, 491, 959, 1081, 1856
FaqI GGGAC 1 cut(s) 1095
FatI CATG 5 cut(s) 73, 487, 955, 1077, 1852
Fnu4HI GCNGC 4 cut(s) 159, 1596, 1599, 1820
FokI GGATG 1 cut(s) 1589
FriOI GRGCYC 1 cut(s) 167
Fsp4HI GCNGC 4 cut(s) 159, 1596, 1599, 1820
FspBI CTAG 1 cut(s) 204
GluI GCNGC 4 cut(s) 159, 1596, 1599, 1820
GsaI CCCAGC 1 cut(s) 153
GsuI CTGGAG 1 cut(s) 1913
HaeIII GGCC 2 cut(s) 292, 1268
HapII CCGG 6 cut(s) 636, 858, 969, 1191, 1217, 1413
Hin1II CATG 5 cut(s) 77, 491, 959, 1081, 1856
HincII GTYRAC 1 cut(s) 1161
HindII GTYRAC 1 cut(s) 1161
HinfI GANTC 2 cut(s) 20, 62
HpaII CCGG 6 cut(s) 636, 858, 969, 1191, 1217, 1413
Hpy166II GTNNAC 2 cut(s) 599, 1161
Hpy188I TCNGA 9 cut(s) 235, 256, 319, 335, 561, 1648, 1730, 1795, 1990
Hpy188III TCNNGA 8 cut(s) 74, 282, 623, 969, 1040, 1178, 1813, 1979
Hpy8I GTNNAC 2 cut(s) 599, 1161
HpyAV CCTTC 4 cut(s) 261, 1315, 1629, 1713
HpyCH4III ACNGT 6 cut(s) 109, 331, 445, 603, 1484, 1640
HpyF3I CTNAG 7 cut(s) 234, 392, 503, 1169, 1727, 1844, 1989
Hsp92II CATG 5 cut(s) 77, 491, 959, 1081, 1856
Kpn2I TCCGGA 1 cut(s) 968
Kzo9I GATC 4 cut(s) 246, 1036, 1670, 1874
LguI GCTCTTC 1 cut(s) 172
Lsp1109I GCAGC 3 cut(s) 1607, 1610, 1806
LweI GCATC 3 cut(s) 225, 1504, 1806
MaeI CTAG 1 cut(s) 204
MaeIII GTNAC 1 cut(s) 1556
MalI GATC 4 cut(s) 248, 1038, 1672, 1876
MboI GATC 4 cut(s) 246, 1036, 1670, 1874
MboII GAAGA 5 cut(s) 159, 841, 952, 1757, 1967
MflI RGATCY 1 cut(s) 1670
MhlI GDGCHC 3 cut(s) 150, 167, 1663
MlyI GAGTC 1 cut(s) 71
MmeI TCCRAC 1 cut(s) 1845
MroI TCCGGA 1 cut(s) 968
MroXI GAANNNNTTC 1 cut(s) 1618
MseI TTAA 8 cut(s) 113, 474, 585, 696, 807, 918, 1473, 1959
MslI CAYNNNNRTG 1 cut(s) 1512
MspA1I CMGCKG 1 cut(s) 1034
MspI CCGG 6 cut(s) 636, 858, 969, 1191, 1217, 1413
MspR9I CCNGG 1 cut(s) 1611
MvaI CCWGG 1 cut(s) 1611
MvnI CGCG 2 cut(s) 161, 672
NdeII GATC 4 cut(s) 246, 1036, 1670, 1874
NlaIII CATG 5 cut(s) 77, 491, 959, 1081, 1856
NmeAIII GCCGAG 1 cut(s) 85
NmuCI GTSAC 1 cut(s) 1556
NspI RCATGY 1 cut(s) 1856
PaeR7I CTCGAG 1 cut(s) 1270
PagI TCATGA 1 cut(s) 73
PceI AGGCCT 1 cut(s) 1268
PciSI GCTCTTC 1 cut(s) 172
PdmI GAANNNNTTC 1 cut(s) 1618
PfeI GAWTC 1 cut(s) 20
PflFI GACNNNGTC 1 cut(s) 329
PfoI TCCNGGA 1 cut(s) 1609
PkrI GCNGC 4 cut(s) 160, 1597, 1600, 1821
PleI GAGTC 1 cut(s) 70
PpsI GAGTC 1 cut(s) 70
PshBI ATTAAT 4 cut(s) 474, 585, 807, 918
Psp124BI GAGCTC 1 cut(s) 167
Psp6I CCWGG 1 cut(s) 1609
PspFI CCCAGC 1 cut(s) 149
PspGI CCWGG 1 cut(s) 1609
PspPI GGNCC 8 cut(s) 290, 416, 527, 638, 1082, 1304, 1415, 1786
PspXI VCTCGAGB 1 cut(s) 1270
PstI CTGCAG 1 cut(s) 1767
PstNI CAGNNNCTG 4 cut(s) 95, 323, 746, 1301
PsuI RGATCY 1 cut(s) 1670
PsyI GACNNNGTC 1 cut(s) 329
PvuII CAGCTG 1 cut(s) 1034
RsaI GTAC 2 cut(s) 123, 1965
RsaNI GTAC 2 cut(s) 122, 1964
RseI CAYNNNNRTG 1 cut(s) 1512
SacI GAGCTC 1 cut(s) 167
SapI GCTCTTC 1 cut(s) 172
SaqAI TTAA 8 cut(s) 113, 474, 585, 696, 807, 918, 1473, 1959
SatI GCNGC 4 cut(s) 159, 1596, 1599, 1820
Sau3AI GATC 4 cut(s) 246, 1036, 1670, 1874
Sau96I GGNCC 8 cut(s) 290, 416, 527, 638, 1082, 1304, 1415, 1786
SchI GAGTC 1 cut(s) 71
ScrFI CCNGG 1 cut(s) 1611
SduI GDGCHC 3 cut(s) 150, 167, 1663
SfaNI GCATC 3 cut(s) 225, 1504, 1806
SfcI CTRYAG 1 cut(s) 1763
Sfr274I CTCGAG 1 cut(s) 1270
SinI GGWCC 7 cut(s) 416, 527, 638, 1082, 1304, 1415, 1786
SlaI CTCGAG 1 cut(s) 1270
SmiMI CAYNNNNRTG 1 cut(s) 1512
SmlI CTYRAG 2 cut(s) 1270, 1811
SmoI CTYRAG 2 cut(s) 1270, 1811
SseBI AGGCCT 1 cut(s) 1268
SsiI CCGC 6 cut(s) 159, 672, 783, 894, 1631, 1822
SspI AATATT 2 cut(s) 472, 1027
SspMI CTAG 1 cut(s) 204
SstI GAGCTC 1 cut(s) 167
StuI AGGCCT 1 cut(s) 1268
StyD4I CCNGG 1 cut(s) 1609
StyI CCWWGG 1 cut(s) 1586
TaaI ACNGT 6 cut(s) 109, 331, 445, 603, 1484, 1640
TaqI TCGA 5 cut(s) 383, 494, 827, 938, 1271
TatI WGTACW 1 cut(s) 121
TauI GCSGC 1 cut(s) 161
TfiI GAWTC 1 cut(s) 20
Tru1I TTAA 8 cut(s) 113, 474, 585, 696, 807, 918, 1473, 1959
Tru9I TTAA 8 cut(s) 113, 474, 585, 696, 807, 918, 1473, 1959
TscAI CASTG 5 cut(s) 150, 529, 751, 1306, 1896
TseFI GTSAC 1 cut(s) 1556
TseI GCWGC 3 cut(s) 1595, 1598, 1819
Tsp45I GTSAC 1 cut(s) 1556
TspDTI ATGAA 8 cut(s) 48, 62, 992, 1103, 1214, 1436, 1695, 1745
TspGWI ACGGA 1 cut(s) 1612
TspRI CASTG 5 cut(s) 150, 529, 751, 1306, 1896
Tth111I GACNNNGTC 1 cut(s) 329
VpaK11BI GGWCC 7 cut(s) 416, 527, 638, 1082, 1304, 1415, 1786
VspI ATTAAT 4 cut(s) 474, 585, 807, 918
XapI RAATTY 2 cut(s) 1220, 1732
XceI RCATGY 1 cut(s) 1856
XhoI CTCGAG 1 cut(s) 1270
XmnI GAANNNNTTC 1 cut(s) 1618
XspI CTAG 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.