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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 218, 857 |
| AccIII | TCCGGA | 2 cut(s) | 256, 1304 |
| AclI | AACGTT | 3 cut(s) | 474, 585, 696 |
| AclWI | GGATC | 3 cut(s) | 244, 1557, 1570 |
| AcsI | RAATTY | 1 cut(s) | 138 |
| AfaI | GTAC | 3 cut(s) | 280, 346, 1086 |
| AgsI | TTSAA | 4 cut(s) | 178, 499, 610, 1611 |
| AjnI | CCWGG | 1 cut(s) | 1501 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 27, 59 |
| AluBI | AGCT | 4 cut(s) | 165, 326, 1487, 1654 |
| AluI | AGCT | 4 cut(s) | 165, 326, 1487, 1654 |
| Alw21I | GWGCWC | 2 cut(s) | 167, 1555 |
| Alw26I | GTCTC | 1 cut(s) | 623 |
| AlwI | GGATC | 3 cut(s) | 244, 1557, 1570 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 95, 326, 971, 1193 |
| Aor13HI | TCCGGA | 2 cut(s) | 256, 1304 |
| AoxI | GGCC | 1 cut(s) | 57 |
| ApeKI | GCWGC | 6 cut(s) | 747, 1080, 1413, 1487, 1490, 1654 |
| ApoI | RAATTY | 1 cut(s) | 138 |
| AseI | ATTAAT | 5 cut(s) | 366, 810, 1032, 1143, 1254 |
| AspS9I | GGNCC | 5 cut(s) | 419, 974, 1196, 1307, 1678 |
| AsuC2I | CCSGG | 1 cut(s) | 150 |
| AsuHPI | GGTGA | 1 cut(s) | 500 |
| AvaII | GGWCC | 5 cut(s) | 419, 974, 1196, 1307, 1678 |
| BaeGI | GKGCMC | 1 cut(s) | 150 |
| BamHI | GGATCC | 1 cut(s) | 1562 |
| BanI | GGYRCC | 2 cut(s) | 218, 857 |
| BanII | GRGCYC | 1 cut(s) | 167 |
| BbsI | GAAGAC | 1 cut(s) | 110 |
| Bbv12I | GWGCWC | 2 cut(s) | 167, 1555 |
| BbvCI | CCTCAGC | 1 cut(s) | 54 |
| BbvI | GCAGC | 6 cut(s) | 759, 1092, 1425, 1474, 1502, 1641 |
| BccI | CCATC | 5 cut(s) | 368, 479, 701, 1502, 1519 |
| BciT130I | CCWGG | 1 cut(s) | 1503 |
| BciVI | GTATCC | 1 cut(s) | 1324 |
| BcnI | CCSGG | 1 cut(s) | 150 |
| BcoDI | GTCTC | 1 cut(s) | 623 |
| BfaI | CTAG | 2 cut(s) | 69, 207 |
| BfmI | CTRYAG | 2 cut(s) | 1488, 1655 |
| BfuI | GTATCC | 1 cut(s) | 1324 |
| BisI | GCNGC | 6 cut(s) | 748, 1081, 1414, 1488, 1491, 1655 |
| BlsI | GCNGC | 6 cut(s) | 749, 1082, 1415, 1489, 1492, 1656 |
| BmcAI | AGTACT | 2 cut(s) | 280, 346 |
| Bme1390I | CCNGG | 2 cut(s) | 150, 1503 |
| Bme18I | GGWCC | 5 cut(s) | 419, 974, 1196, 1307, 1678 |
| BmgT120I | GGNCC | 5 cut(s) | 419, 974, 1196, 1307, 1678 |
| BmrFI | CCNGG | 2 cut(s) | 150, 1503 |
| BmrI | ACTGGG | 1 cut(s) | 267 |
| BmsI | GCATC | 3 cut(s) | 304, 392, 725 |
| BmuI | ACTGGG | 1 cut(s) | 267 |
| BpiI | GAAGAC | 1 cut(s) | 110 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 154, 186, 1286, 1318 |
| Bpu10I | CCTNAGC | 1 cut(s) | 54 |
| BpuEI | CTTGAG | 1 cut(s) | 1688 |
| BpuMI | CCSGG | 1 cut(s) | 150 |
| BsaJI | CCNNGG | 1 cut(s) | 1478 |
| BsaWI | WCCGGW | 4 cut(s) | 256, 416, 860, 1304 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1542, 1572 |
| Bse1I | ACTGG | 5 cut(s) | 143, 273, 976, 1198, 1556 |
| Bse3DI | GCAATG | 1 cut(s) | 1072 |
| BseAI | TCCGGA | 2 cut(s) | 256, 1304 |
| BseBI | CCWGG | 1 cut(s) | 1503 |
| BseDI | CCNNGG | 1 cut(s) | 1478 |
| BseGI | GGATG | 1 cut(s) | 1494 |
| BseMI | GCAATG | 1 cut(s) | 1072 |
| BseMII | CTCAG | 2 cut(s) | 45, 228 |
| BseNI | ACTGG | 5 cut(s) | 143, 273, 976, 1198, 1556 |
| BseRI | GAGGAG | 1 cut(s) | 1563 |
| BseSI | GKGCMC | 1 cut(s) | 150 |
| BseXI | GCAGC | 6 cut(s) | 759, 1092, 1425, 1474, 1502, 1641 |
| BseYI | CCCAGC | 1 cut(s) | 158 |
| Bsh1285I | CGRYCG | 1 cut(s) | 755 |
| BshFI | GGCC | 1 cut(s) | 59 |
| BshNI | GGYRCC | 2 cut(s) | 218, 857 |
| BsiEI | CGRYCG | 1 cut(s) | 755 |
| BsiHKAI | GWGCWC | 2 cut(s) | 167, 1555 |
| BsiSI | CCGG | 6 cut(s) | 150, 257, 417, 861, 1305, 1460 |
| BslFI | GGGAC | 1 cut(s) | 1629 |
| BsmAI | GTCTC | 1 cut(s) | 623 |
| BsmFI | GGGAC | 1 cut(s) | 1629 |
| BsnI | GGCC | 1 cut(s) | 59 |
| Bsp1286I | GDGCHC | 3 cut(s) | 150, 167, 1555 |
| Bsp13I | TCCGGA | 2 cut(s) | 256, 1304 |
| Bsp143I | GATC | 2 cut(s) | 249, 1562 |
| BspANI | GGCC | 1 cut(s) | 59 |
| BspCNI | CTCAG | 2 cut(s) | 46, 229 |
| BspEI | TCCGGA | 2 cut(s) | 256, 1304 |
| BspHI | TCATGA | 1 cut(s) | 73 |
| BspMAI | CTGCAG | 2 cut(s) | 1492, 1659 |
| BspPI | GGATC | 3 cut(s) | 244, 1557, 1570 |
| BspQI | GCTCTTC | 1 cut(s) | 172 |
| BspT107I | GGYRCC | 2 cut(s) | 218, 857 |
| BsrDI | GCAATG | 1 cut(s) | 1072 |
| BsrI | ACTGG | 5 cut(s) | 143, 273, 976, 1198, 1556 |
| BssECI | CCNNGG | 1 cut(s) | 1478 |
| BssMI | GATC | 2 cut(s) | 249, 1562 |
| BssT1I | CCWWGG | 1 cut(s) | 1478 |
| Bst2UI | CCWGG | 1 cut(s) | 1503 |
| Bst6I | CTCTTC | 3 cut(s) | 172, 1065, 1632 |
| BstDEI | CTNAG | 6 cut(s) | 54, 237, 395, 728, 1061, 1434 |
| BstF5I | GGATG | 1 cut(s) | 1494 |
| BstKTI | GATC | 2 cut(s) | 252, 1565 |
| BstMAI | GTCTC | 1 cut(s) | 623 |
| BstMBI | GATC | 2 cut(s) | 249, 1562 |
| BstMCI | CGRYCG | 1 cut(s) | 755 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1660 |
| BstNI | CCWGG | 1 cut(s) | 1503 |
| BstSCI | CCNGG | 2 cut(s) | 148, 1501 |
| BstSFI | CTRYAG | 2 cut(s) | 1488, 1655 |
| BstSLI | GKGCMC | 1 cut(s) | 150 |
| BstV1I | GCAGC | 6 cut(s) | 759, 1092, 1425, 1474, 1502, 1641 |
| BstV2I | GAAGAC | 1 cut(s) | 110 |
| BstX2I | RGATCY | 1 cut(s) | 1562 |
| BstYI | RGATCY | 1 cut(s) | 1562 |
| BsuI | GTATCC | 1 cut(s) | 1324 |
| BsuRI | GGCC | 1 cut(s) | 59 |
| BtsCI | GGATG | 1 cut(s) | 1494 |
| BtsIMutI | CAGTG | 7 cut(s) | 150, 571, 682, 793, 904, 969, 1191 |
| CaiI | CAGNNNCTG | 4 cut(s) | 95, 326, 971, 1193 |
| CciI | TCATGA | 1 cut(s) | 73 |
| Cfr13I | GGNCC | 5 cut(s) | 419, 974, 1196, 1307, 1678 |
| CpoI | CGGWCCG | 1 cut(s) | 419 |
| CseI | GACGC | 1 cut(s) | 338 |
| Csp6I | GTAC | 3 cut(s) | 279, 345, 1085 |
| CspI | CGGWCCG | 1 cut(s) | 419 |
| CviAII | CATG | 2 cut(s) | 74, 1691 |
| CviQI | GTAC | 3 cut(s) | 279, 345, 1085 |
| DdeI | CTNAG | 6 cut(s) | 54, 237, 395, 728, 1061, 1434 |
| DpnI | GATC | 2 cut(s) | 251, 1564 |
| DpnII | GATC | 2 cut(s) | 249, 1562 |
| Eam1104I | CTCTTC | 3 cut(s) | 172, 1065, 1632 |
| EarI | CTCTTC | 3 cut(s) | 172, 1065, 1632 |
| Ecl136II | GAGCTC | 1 cut(s) | 165 |
| Eco130I | CCWWGG | 1 cut(s) | 1478 |
| Eco24I | GRGCYC | 1 cut(s) | 167 |
| Eco32I | GATATC | 5 cut(s) | 426, 648, 759, 870, 1092 |
| Eco47I | GGWCC | 5 cut(s) | 419, 974, 1196, 1307, 1678 |
| Eco53kI | GAGCTC | 1 cut(s) | 165 |
| EcoICRI | GAGCTC | 1 cut(s) | 165 |
| EcoRI | GAATTC | 1 cut(s) | 138 |
| EcoRII | CCWGG | 1 cut(s) | 1501 |
| EcoRV | GATATC | 5 cut(s) | 426, 648, 759, 870, 1092 |
| EcoT14I | CCWWGG | 1 cut(s) | 1478 |
| EcoT38I | GRGCYC | 1 cut(s) | 167 |
| ErhI | CCWWGG | 1 cut(s) | 1478 |
| FaeI | CATG | 2 cut(s) | 77, 1694 |
| FaqI | GGGAC | 1 cut(s) | 1629 |
| FatI | CATG | 2 cut(s) | 73, 1690 |
| Fnu4HI | GCNGC | 6 cut(s) | 748, 1081, 1414, 1488, 1491, 1655 |
| FokI | GGATG | 1 cut(s) | 1481 |
| FriOI | GRGCYC | 1 cut(s) | 167 |
| Fsp4HI | GCNGC | 6 cut(s) | 748, 1081, 1414, 1488, 1491, 1655 |
| FspBI | CTAG | 2 cut(s) | 69, 207 |
| GluI | GCNGC | 6 cut(s) | 748, 1081, 1414, 1488, 1491, 1655 |
| GsaI | CCCAGC | 1 cut(s) | 162 |
| HaeIII | GGCC | 1 cut(s) | 59 |
| HapII | CCGG | 6 cut(s) | 150, 257, 417, 861, 1305, 1460 |
| HgaI | GACGC | 1 cut(s) | 338 |
| Hin1II | CATG | 2 cut(s) | 77, 1694 |
| HincII | GTYRAC | 1 cut(s) | 1285 |
| HindII | GTYRAC | 1 cut(s) | 1285 |
| HinfI | GANTC | 1 cut(s) | 20 |
| HpaI | GTTAAC | 1 cut(s) | 1285 |
| HpaII | CCGG | 6 cut(s) | 150, 257, 417, 861, 1305, 1460 |
| HphI | GGTGA | 1 cut(s) | 500 |
| Hpy166II | GTNNAC | 6 cut(s) | 562, 673, 784, 895, 1122, 1285 |
| Hpy188I | TCNGA | 5 cut(s) | 238, 322, 338, 1540, 1687 |
| Hpy188III | TCNNGA | 4 cut(s) | 74, 257, 1305, 1705 |
| Hpy8I | GTNNAC | 6 cut(s) | 562, 673, 784, 895, 1122, 1285 |
| HpyAV | CCTTC | 2 cut(s) | 172, 1605 |
| HpyCH4IV | ACGT | 3 cut(s) | 474, 585, 696 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1660 |
| HpyF3I | CTNAG | 6 cut(s) | 54, 237, 395, 728, 1061, 1434 |
| HpySE526I | ACGT | 3 cut(s) | 474, 585, 696 |
| Hsp92II | CATG | 2 cut(s) | 77, 1694 |
| Kpn2I | TCCGGA | 2 cut(s) | 256, 1304 |
| KspAI | GTTAAC | 1 cut(s) | 1285 |
| Kzo9I | GATC | 2 cut(s) | 249, 1562 |
| LguI | GCTCTTC | 1 cut(s) | 172 |
| Lsp1109I | GCAGC | 6 cut(s) | 759, 1092, 1425, 1474, 1502, 1641 |
| LweI | GCATC | 3 cut(s) | 304, 392, 725 |
| MaeI | CTAG | 2 cut(s) | 69, 207 |
| MaeII | ACGT | 3 cut(s) | 474, 585, 696 |
| MalI | GATC | 2 cut(s) | 251, 1564 |
| MboI | GATC | 2 cut(s) | 249, 1562 |
| MboII | GAAGA | 6 cut(s) | 115, 159, 511, 622, 1082, 1649 |
| MflI | RGATCY | 1 cut(s) | 1562 |
| MhlI | GDGCHC | 3 cut(s) | 150, 167, 1555 |
| MluCI | AATT | 7 cut(s) | 138, 199, 504, 615, 948, 1251, 1673 |
| MroI | TCCGGA | 2 cut(s) | 256, 1304 |
| MspA1I | CMGCKG | 1 cut(s) | 1654 |
| MspI | CCGG | 6 cut(s) | 150, 257, 417, 861, 1305, 1460 |
| MspR9I | CCNGG | 2 cut(s) | 150, 1503 |
| MvaI | CCWGG | 1 cut(s) | 1503 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1660 |
| NciI | CCSGG | 1 cut(s) | 150 |
| NdeII | GATC | 2 cut(s) | 249, 1562 |
| NlaIII | CATG | 2 cut(s) | 77, 1694 |
| NmeAIII | GCCGAG | 1 cut(s) | 85 |
| PagI | TCATGA | 1 cut(s) | 73 |
| PciSI | GCTCTTC | 1 cut(s) | 172 |
| PfeI | GAWTC | 1 cut(s) | 20 |
| PflFI | GACNNNGTC | 1 cut(s) | 332 |
| PfoI | TCCNGGA | 1 cut(s) | 1501 |
| PkrI | GCNGC | 6 cut(s) | 749, 1082, 1415, 1489, 1492, 1656 |
| PshBI | ATTAAT | 5 cut(s) | 366, 810, 1032, 1143, 1254 |
| Psp124BI | GAGCTC | 1 cut(s) | 167 |
| Psp1406I | AACGTT | 3 cut(s) | 474, 585, 696 |
| Psp6I | CCWGG | 1 cut(s) | 1501 |
| PspFI | CCCAGC | 1 cut(s) | 158 |
| PspGI | CCWGG | 1 cut(s) | 1501 |
| PspPI | GGNCC | 5 cut(s) | 419, 974, 1196, 1307, 1678 |
| PstI | CTGCAG | 2 cut(s) | 1492, 1659 |
| PstNI | CAGNNNCTG | 4 cut(s) | 95, 326, 971, 1193 |
| PsuI | RGATCY | 1 cut(s) | 1562 |
| PsyI | GACNNNGTC | 1 cut(s) | 332 |
| PvuII | CAGCTG | 1 cut(s) | 1654 |
| RsaI | GTAC | 3 cut(s) | 280, 346, 1086 |
| RsaNI | GTAC | 3 cut(s) | 279, 345, 1085 |
| Rsr2I | CGGWCCG | 1 cut(s) | 419 |
| RsrII | CGGWCCG | 1 cut(s) | 419 |
| SacI | GAGCTC | 1 cut(s) | 167 |
| SapI | GCTCTTC | 1 cut(s) | 172 |
| SatI | GCNGC | 6 cut(s) | 748, 1081, 1414, 1488, 1491, 1655 |
| Sau3AI | GATC | 2 cut(s) | 249, 1562 |
| Sau96I | GGNCC | 5 cut(s) | 419, 974, 1196, 1307, 1678 |
| ScaI | AGTACT | 2 cut(s) | 280, 346 |
| ScrFI | CCNGG | 2 cut(s) | 150, 1503 |
| SduI | GDGCHC | 3 cut(s) | 150, 167, 1555 |
| SfaNI | GCATC | 3 cut(s) | 304, 392, 725 |
| SfcI | CTRYAG | 2 cut(s) | 1488, 1655 |
| SinI | GGWCC | 5 cut(s) | 419, 974, 1196, 1307, 1678 |
| SmlI | CTYRAG | 1 cut(s) | 1703 |
| SmoI | CTYRAG | 1 cut(s) | 1703 |
| Sse9I | AATT | 7 cut(s) | 138, 199, 504, 615, 948, 1251, 1673 |
| SspMI | CTAG | 2 cut(s) | 69, 207 |
| SstI | GAGCTC | 1 cut(s) | 167 |
| StyD4I | CCNGG | 2 cut(s) | 148, 1501 |
| StyI | CCWWGG | 1 cut(s) | 1478 |
| TaiI | ACGT | 3 cut(s) | 477, 588, 699 |
| TaqI | TCGA | 3 cut(s) | 386, 719, 1163 |
| TaqII | GACCGA | 2 cut(s) | 436, 769 |
| TasI | AATT | 7 cut(s) | 138, 199, 504, 615, 948, 1251, 1673 |
| TatI | WGTACW | 2 cut(s) | 278, 344 |
| TfiI | GAWTC | 1 cut(s) | 20 |
| TscAI | CASTG | 7 cut(s) | 150, 571, 682, 793, 904, 976, 1198 |
| TseI | GCWGC | 6 cut(s) | 747, 1080, 1413, 1487, 1490, 1654 |
| TspDTI | ATGAA | 9 cut(s) | 48, 440, 995, 1083, 1217, 1328, 1439, 1587, 1637 |
| TspRI | CASTG | 7 cut(s) | 150, 571, 682, 793, 904, 976, 1198 |
| Tth111I | GACNNNGTC | 1 cut(s) | 332 |
| VpaK11BI | GGWCC | 5 cut(s) | 419, 974, 1196, 1307, 1678 |
| VspI | ATTAAT | 5 cut(s) | 366, 810, 1032, 1143, 1254 |
| XapI | RAATTY | 1 cut(s) | 138 |
| XspI | CTAG | 2 cut(s) | 69, 207 |
| ZrmI | AGTACT | 2 cut(s) | 280, 346 |