Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0000902

Physical Location & Seq

Genomic Coordinates Reverse (-)

1036360 .. 1038508

Gene Structure 2149 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1009100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGAACTCAAATCTCAGCAACAATGCACCGGCCAACAGTGTGCTTGGTTCATCTGTGTGCCATAAGCAATCCACATTACCGGTAAAAAAGGTGGTGTTGAGAGATGTACAGAACGATAATAGAAGCTGTACGCCTAGTTATCCTGAGAATTCTTTTCTAGGACGGCTGCTCGCAGATCCAATTAAGGTTTCTGGAACTAAGATACTCAGCCCTGAGTTTGCGCGGAGCCCTCCTTGCCACCAGTTCACGAGGATCAGCGATCCAAGTGATCATCTCATGCATGGTGGGGTTGTGAAGAAGTTAGACTCAGAACTAGGAAAGCGAAGAGCTCAAGGTGTTAAGGAAGATTGCCTAAATTTCAAACGACATTGTTCGCAAAAGGCGCCAGACCTACCTAAAGAAAGAAACAAGAAGCAAGAGTTAGAGACATCTTGTTTACCTGCATTTTCACCAACGCATTGGGCTTCTCCGATTAAATTCTCACCTAGTAGACCACCAGTTCCAAATTTTCTTAGAAAGTCTAGTAATGGCCTTCCAGCTGCTAATTCCAAGCACCTTAGATTTACTCCTGAATCTGAAGTTCCCCAGTCAGTTCTTTCTGAGAGGAACCGTGATGAGGAAAGGACAGAACGGTTTCTACATCTGCAGAACCTCTTGAAACACTTTGACGAGTCTGATCAGAGCGAATATCTCCAGATGCTTCGTTGTTTACCTTCATCCGAGCTTAGCAGACATGCCGTTGAGCTAGAGAAAAGATCGATGCAGCTATCAGTTGAGGAAGCAAAAGAGATCCAAAAGATGAAAGCTCTAAATATATTGGGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIN52

Protein Analysis

276

Amino Acids

31.02

Weight (kDa)

9.31

Isoelectric Point (pI)

83.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000902)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38280
fragaria_vesca	FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_5g25250 FvH4_5g25250 FvH4_5g25250 FvH4_5g25250 FvH4_5g25250 FvH4_5g25250 FvH4_5g25250
malus_domestica	MD05G1134400.v1.1 MD06G1009100.v1.1 MD10G1139500.v1.1
prunus_persica	Prupe.5G011500_v2.0.a1 Prupe.8G178200_v2.0.a1 Prupe.8G178200_v2.0.a1 Prupe.8G178200_v2.0.a1 Prupe.8G178200_v2.0.a1 Prupe.8G178200_v2.0.a1 Prupe.8G178200_v2.0.a1
pyrus_communis	pycom05g13100 pycom06g00760 pycom10g11850
rosa_chinensis	RchiOBHm_Chr6g0280681 RchiOBHm_Chr7g0215391
rosa_laevigata	RLG00000002666 RLG00000013036
rosa_multiflora	Rmu_sc0000355.1_g000008 Rmu_sc0000976.1_g000009
rosa_roxburghii	Rroxscaffold_3G00244230 Rroxscaffold_7G00187760
rosa_rugosa	Rorug06G0133800 Rorug06G0133800 Rorug06G0133800 Rorug06G0133800 Rorug07G0152800 Rorug07G0152900 Rorug07G0153000 Rorug07G0153100
rosa_samantha	Rh6AG246400 Rh6BG248600 Rh6CG249900 Rh6DG241300 Rh7AG289600 Rh7BG281500 Rh7CG309200 Rh7DG293100
rosa_wichuraiana	Rw6G021320 Rw7G024740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	448
AccB1I	GGYRCC	1 cut(s)	382
AccI	GTMKAC	1 cut(s)	490
AccII	CGCG	1 cut(s)	223
AciI	CCGC	1 cut(s)	223
AclWI	GGATC	4 cut(s)	170, 254, 260, 784
AcoI	YGGCCR	1 cut(s)	30
AcsI	RAATTY	4 cut(s)	148, 355, 476, 505
AcuI	CTGAAG	1 cut(s)	597
AcyI	GRCGYC	1 cut(s)	383
AfaI	GTAC	2 cut(s)	108, 130
AfiI	CCNNNNNNNGG	1 cut(s)	616
AgeI	ACCGGT	1 cut(s)	79
AgsI	TTSAA	2 cut(s)	361, 658
AjuI	GAANNNNNNNTTGG	2 cut(s)	172, 204
AluBI	AGCT	7 cut(s)	126, 329, 539, 724, 745, 766, 806
AluI	AGCT	7 cut(s)	126, 329, 539, 724, 745, 766, 806
Alw21I	GWGCWC	1 cut(s)	331
Alw26I	GTCTC	1 cut(s)	419
AlwI	GGATC	4 cut(s)	170, 254, 260, 784
AoxI	GGCC	2 cut(s)	30, 529
ApeKI	GCWGC	3 cut(s)	166, 539, 763
ApoI	RAATTY	4 cut(s)	148, 355, 476, 505
AsiGI	ACCGGT	1 cut(s)	79
Asp700I	GAANNNNTTC	1 cut(s)	633
AspLEI	GCGC	2 cut(s)	223, 385
AsuHPI	GGTGA	2 cut(s)	441, 474
BanI	GGYRCC	1 cut(s)	382
BanII	GRGCYC	2 cut(s)	230, 331
BauI	CACGAG	1 cut(s)	247
Bbv12I	GWGCWC	1 cut(s)	331
BbvI	GCAGC	3 cut(s)	153, 526, 775
BceAI	ACGGC	2 cut(s)	179, 722
BclI	TGATCA	2 cut(s)	268, 676
BcoDI	GTCTC	1 cut(s)	419
BfaI	CTAG	6 cut(s)	135, 158, 314, 486, 522, 746
BfmI	CTRYAG	1 cut(s)	644
BfoI	RGCGCY	1 cut(s)	386
BfuAI	ACCTGC	1 cut(s)	448
BisI	GCNGC	3 cut(s)	167, 540, 764
BlpI	GCTNAGC	1 cut(s)	725
BlsI	GCNGC	3 cut(s)	168, 541, 765
BmiI	GGNNCC	3 cut(s)	227, 384, 608
BmrI	ACTGGG	1 cut(s)	580
BmsI	GCATC	2 cut(s)	687, 750
BmuI	ACTGGG	1 cut(s)	580
BpmI	CTGGAG	1 cut(s)	677
Bpu1102I	GCTNAGC	1 cut(s)	725
BpuEI	CTTGAG	1 cut(s)	315
Bsa29I	ATCGAT	1 cut(s)	758
BsaHI	GRCGYC	1 cut(s)	383
BsaWI	WCCGGW	1 cut(s)	79
Bsc4I	CCNNNNNNNGG	1 cut(s)	616
Bse118I	RCCGGY	2 cut(s)	28, 79
Bse1I	ACTGG	3 cut(s)	241, 497, 586
BseCI	ATCGAT	1 cut(s)	758
BseGI	GGATG	1 cut(s)	716
BseLI	CCNNNNNNNGG	1 cut(s)	616
BseMII	CTCAG	6 cut(s)	28, 135, 204, 220, 321, 591
BseNI	ACTGG	3 cut(s)	241, 497, 586
BseXI	GCAGC	3 cut(s)	153, 526, 775
Bsh1236I	CGCG	1 cut(s)	223
BshFI	GGCC	2 cut(s)	32, 531
BshNI	GGYRCC	1 cut(s)	382
BshTI	ACCGGT	1 cut(s)	79
BshVI	ATCGAT	1 cut(s)	758
BsiHKAI	GWGCWC	1 cut(s)	331
BsiSI	CCGG	2 cut(s)	29, 80
BslI	CCNNNNNNNGG	1 cut(s)	616
BsmAI	GTCTC	1 cut(s)	419
BsnI	GGCC	2 cut(s)	32, 531
Bsp1286I	GDGCHC	2 cut(s)	230, 331
Bsp1407I	TGTACA	1 cut(s)	106
Bsp143I	GATC	7 cut(s)	175, 252, 259, 268, 676, 755, 789
Bsp1720I	GCTNAGC	1 cut(s)	725
BspACI	CCGC	1 cut(s)	223
BspANI	GGCC	2 cut(s)	32, 531
BspCNI	CTCAG	6 cut(s)	27, 136, 205, 219, 320, 592
BspDI	ATCGAT	1 cut(s)	758
BspFNI	CGCG	1 cut(s)	223
BspLI	GGNNCC	3 cut(s)	227, 384, 608
BspMAI	CTGCAG	1 cut(s)	648
BspMI	ACCTGC	1 cut(s)	448
BspPI	GGATC	4 cut(s)	170, 254, 260, 784
BspQI	GCTCTTC	1 cut(s)	319
BspT107I	GGYRCC	1 cut(s)	382
BsrFI	RCCGGY	2 cut(s)	28, 79
BsrGI	TGTACA	1 cut(s)	106
BsrI	ACTGG	3 cut(s)	241, 497, 586
BssAI	RCCGGY	2 cut(s)	28, 79
BssMI	GATC	7 cut(s)	175, 252, 259, 268, 676, 755, 789
BssNI	GRCGYC	1 cut(s)	383
BssSI	CACGAG	1 cut(s)	247
Bst2BI	CACGAG	1 cut(s)	247
Bst4CI	ACNGT	3 cut(s)	38, 611, 633
Bst6I	CTCTTC	1 cut(s)	319
BstACI	GRCGYC	1 cut(s)	383
BstAUI	TGTACA	1 cut(s)	106
BstC8I	GCNNGC	1 cut(s)	171
BstF5I	GGATG	1 cut(s)	716
BstFNI	CGCG	1 cut(s)	223
BstH2I	RGCGCY	1 cut(s)	386
BstHHI	GCGC	2 cut(s)	223, 385
BstKTI	GATC	7 cut(s)	178, 255, 262, 271, 679, 758, 792
BstMAI	GTCTC	1 cut(s)	419
BstMBI	GATC	7 cut(s)	175, 252, 259, 268, 676, 755, 789
BstMWI	GCNNNNNNNGC	2 cut(s)	234, 382
BstNSI	RCATGY	1 cut(s)	737
BstSFI	CTRYAG	1 cut(s)	644
BstUI	CGCG	1 cut(s)	223
BstV1I	GCAGC	3 cut(s)	153, 526, 775
BstX2I	RGATCY	2 cut(s)	175, 789
BstXI	CCANNNNNNTGG	1 cut(s)	459
BstYI	RGATCY	2 cut(s)	175, 789
Bsu15I	ATCGAT	1 cut(s)	758
BsuRI	GGCC	2 cut(s)	32, 531
BsuTUI	ATCGAT	1 cut(s)	758
BtsCI	GGATG	1 cut(s)	716
BtsIMutI	CAGTG	1 cut(s)	43
BveI	ACCTGC	1 cut(s)	448
Cac8I	GCNNGC	1 cut(s)	171
CfoI	GCGC	2 cut(s)	223, 385
Cfr10I	RCCGGY	2 cut(s)	28, 79
ClaI	ATCGAT	1 cut(s)	758
Csp6I	GTAC	2 cut(s)	107, 129
CspAI	ACCGGT	1 cut(s)	79
CviAII	CATG	3 cut(s)	277, 281, 734
CviQI	GTAC	2 cut(s)	107, 129
DinI	GGCGCC	1 cut(s)	384
DpnI	GATC	7 cut(s)	177, 254, 261, 270, 678, 757, 791
DpnII	GATC	7 cut(s)	175, 252, 259, 268, 676, 755, 789
EaeI	YGGCCR	1 cut(s)	30
Eam1104I	CTCTTC	1 cut(s)	319
EarI	CTCTTC	1 cut(s)	319
Ecl136II	GAGCTC	1 cut(s)	329
Eco24I	GRGCYC	2 cut(s)	230, 331
Eco53kI	GAGCTC	1 cut(s)	329
Eco57I	CTGAAG	1 cut(s)	597
EcoICRI	GAGCTC	1 cut(s)	329
EcoRI	GAATTC	1 cut(s)	148
EcoT22I	ATGCAT	1 cut(s)	282
EcoT38I	GRGCYC	2 cut(s)	230, 331
EgeI	GGCGCC	1 cut(s)	384
EheI	GGCGCC	1 cut(s)	384
FaeI	CATG	3 cut(s)	280, 284, 737
FaiI	YATR	5 cut(s)	63, 278, 282, 735, 815
FatI	CATG	3 cut(s)	276, 280, 733
FbaI	TGATCA	2 cut(s)	268, 676
FblI	GTMKAC	1 cut(s)	490
Fnu4HI	GCNGC	3 cut(s)	167, 540, 764
FokI	GGATG	1 cut(s)	703
FriOI	GRGCYC	2 cut(s)	230, 331
Fsp4HI	GCNGC	3 cut(s)	167, 540, 764
FspBI	CTAG	6 cut(s)	135, 158, 314, 486, 522, 746
GlaI	GCGC	2 cut(s)	222, 384
GluI	GCNGC	3 cut(s)	167, 540, 764
GsuI	CTGGAG	1 cut(s)	677
HaeII	RGCGCY	1 cut(s)	386
HaeIII	GGCC	2 cut(s)	32, 531
HapII	CCGG	2 cut(s)	29, 80
HhaI	GCGC	2 cut(s)	223, 385
Hin1I	GRCGYC	1 cut(s)	383
Hin1II	CATG	3 cut(s)	280, 284, 737
Hin6I	GCGC	2 cut(s)	221, 383
HinP1I	GCGC	2 cut(s)	221, 383
HinfI	GANTC	3 cut(s)	305, 572, 671
HpaII	CCGG	2 cut(s)	29, 80
HphI	GGTGA	2 cut(s)	441, 474
Hpy166II	GTNNAC	4 cut(s)	246, 437, 491, 710
Hpy188I	TCNGA	7 cut(s)	310, 471, 577, 601, 676, 681, 721
Hpy188III	TCNNGA	6 cut(s)	143, 192, 247, 569, 655, 694
Hpy8I	GTNNAC	4 cut(s)	246, 437, 491, 710
HpyAV	CCTTC	2 cut(s)	542, 723
HpyCH4III	ACNGT	3 cut(s)	38, 611, 633
HpyCH4V	TGCA	5 cut(s)	26, 280, 443, 646, 763
HpyF10VI	GCNNNNNNNGC	2 cut(s)	234, 382
Hsp92I	GRCGYC	1 cut(s)	383
Hsp92II	CATG	3 cut(s)	280, 284, 737
HspAI	GCGC	2 cut(s)	221, 383
KasI	GGCGCC	1 cut(s)	382
Ksp22I	TGATCA	2 cut(s)	268, 676
Kzo9I	GATC	7 cut(s)	175, 252, 259, 268, 676, 755, 789
LguI	GCTCTTC	1 cut(s)	319
LmnI	GCTCC	1 cut(s)	225
Lsp1109I	GCAGC	3 cut(s)	153, 526, 775
LweI	GCATC	2 cut(s)	687, 750
MaeI	CTAG	6 cut(s)	135, 158, 314, 486, 522, 746
MalI	GATC	7 cut(s)	177, 254, 261, 270, 678, 757, 791
MboI	GATC	7 cut(s)	175, 252, 259, 268, 676, 755, 789
MboII	GAAGA	3 cut(s)	307, 336, 356
MflI	RGATCY	2 cut(s)	175, 789
MhlI	GDGCHC	2 cut(s)	230, 331
MluCI	AATT	6 cut(s)	148, 180, 355, 476, 505, 544
Mly113I	GGCGCC	1 cut(s)	383
MlyI	GAGTC	2 cut(s)	299, 680
MnlI	CCTC	6 cut(s)	240, 243, 597, 610, 662, 769
Mph1103I	ATGCAT	1 cut(s)	282
MroXI	GAANNNNTTC	1 cut(s)	633
MseI	TTAA	3 cut(s)	183, 339, 474
MslI	CAYNNNNRTG	1 cut(s)	55
MspA1I	CMGCKG	1 cut(s)	539
MspI	CCGG	2 cut(s)	29, 80
MvnI	CGCG	1 cut(s)	223
MwoI	GCNNNNNNNGC	2 cut(s)	234, 382
NarI	GGCGCC	1 cut(s)	383
NdeII	GATC	7 cut(s)	175, 252, 259, 268, 676, 755, 789
NlaIII	CATG	3 cut(s)	280, 284, 737
NlaIV	GGNNCC	3 cut(s)	227, 384, 608
NsiI	ATGCAT	1 cut(s)	282
NspI	RCATGY	1 cut(s)	737
PciSI	GCTCTTC	1 cut(s)	319
PdmI	GAANNNNTTC	1 cut(s)	633
PfeI	GAWTC	1 cut(s)	572
PinAI	ACCGGT	1 cut(s)	79
PkrI	GCNGC	3 cut(s)	168, 541, 765
PleI	GAGTC	2 cut(s)	299, 679
PluTI	GGCGCC	1 cut(s)	386
PpsI	GAGTC	2 cut(s)	299, 679
Psp124BI	GAGCTC	1 cut(s)	331
PspN4I	GGNNCC	3 cut(s)	227, 384, 608
PsrI	GAACNNNNNNTAC	2 cut(s)	621, 653
PstI	CTGCAG	1 cut(s)	648
PsuI	RGATCY	2 cut(s)	175, 789
PvuII	CAGCTG	1 cut(s)	539
RsaI	GTAC	2 cut(s)	108, 130
RsaNI	GTAC	2 cut(s)	107, 129
RseI	CAYNNNNRTG	1 cut(s)	55
SacI	GAGCTC	1 cut(s)	331
SapI	GCTCTTC	1 cut(s)	319
SaqAI	TTAA	3 cut(s)	183, 339, 474
SatI	GCNGC	3 cut(s)	167, 540, 764
Sau3AI	GATC	7 cut(s)	175, 252, 259, 268, 676, 755, 789
SchI	GAGTC	2 cut(s)	299, 680
SduI	GDGCHC	2 cut(s)	230, 331
SfaNI	GCATC	2 cut(s)	687, 750
SfcI	CTRYAG	1 cut(s)	644
SfoI	GGCGCC	1 cut(s)	384
SmiMI	CAYNNNNRTG	1 cut(s)	55
SmlI	CTYRAG	1 cut(s)	330
SmoI	CTYRAG	1 cut(s)	330
Sse9I	AATT	6 cut(s)	148, 180, 355, 476, 505, 544
SsiI	CCGC	1 cut(s)	223
SspDI	GGCGCC	1 cut(s)	382
SspMI	CTAG	6 cut(s)	135, 158, 314, 486, 522, 746
SstI	GAGCTC	1 cut(s)	331
TaaI	ACNGT	3 cut(s)	38, 611, 633
TaqI	TCGA	1 cut(s)	758
TasI	AATT	6 cut(s)	148, 180, 355, 476, 505, 544
TatI	WGTACW	1 cut(s)	106
TfiI	GAWTC	1 cut(s)	572
Tru1I	TTAA	3 cut(s)	183, 339, 474
Tru9I	TTAA	3 cut(s)	183, 339, 474
TscAI	CASTG	1 cut(s)	43
TseI	GCWGC	3 cut(s)	166, 539, 763
TspDTI	ATGAA	4 cut(s)	17, 39, 705, 815
TspRI	CASTG	1 cut(s)	43
XapI	RAATTY	4 cut(s)	148, 355, 476, 505
XceI	RCATGY	1 cut(s)	737
XmiI	GTMKAC	1 cut(s)	490
XmnI	GAANNNNTTC	1 cut(s)	633
XspI	CTAG	6 cut(s)	135, 158, 314, 486, 522, 746
Zsp2I	ATGCAT	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.