Rh6BG248600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000902
Physical Location & Seq
Forward (+)
45979030 .. 45983678
4649 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG248600.1

Sequence Viewer

Length: 1608 bp
ATGGTTCAGCATACCATAGATTCTAAAACCAATGAATATGGGCTTGGAACTGCTGAGGCTGAGTTGTCTAGTCATGATAAGCAGTTGTCAGGTCCTGTAAAGAAGACAGTTTTAAGAGATGTGCAAAATGACAATAGAATTCCAGTGCCCGGCTCTGCTGGGAGCTCTTCTCCATTGAAGGATAAGATACCTAATAGTAATTCCCCTAGAGTTTCTGGCACCAAAAGACCTTTATCTGAGTGCCAGATGATCCCTCCTGAACCGCAACCCCCCAGTAGTACTTTTGCAAATGGGCATCTTGTCTATGTTCGCAGGAAATCAGAAGCTGACGCAGTCAGAAGTAGTACTAATGATAATGCAAGCATTAATGCTGATGGTCAGGCATCGAGGAAACTTAGCAACCAAGAGGCAAGCACCGGACCGATATCCCAAACAAAGGAGCCAACAGTTCACAGTGCTAATGATAATGCAAACGTTAATGCTGATGGTGAGGTGTTGAAGATAATTAGCCACCAAGAGGCAGGCAAAGGACAGATACCCCAAACAAAGGAGCCAACAGTTCACAGTGCTAGTGATAATGCAAACGTTAATGCTGATGGTCAGGCATTGAGGAAACTTAGCAATCAAGAGGCAAGCAGCCGACCGATATCCCAAACAAAGGAGCCAACAGTTCACAGTGCTAATGATAATGCAAACATTAATTCTGATTGTGAGGTGTTGAGGATAGTTAGCCACCAAGAGGCAGGCACCGGACAGATATCCAAAACAAAGGATCCAGCAGTTCACAGTGCTAATGATAATGCAAACAATAATGCTGATTGTAAGGTGTTGAGGATAATTAGCCACCAAGAGGCAGGCACCGGACCTATATCCCAAACAAAGGAGCCAGAAGTTCACTTTGCTGATGATAATGCCAGCATTAATGCCGATTGTCAGGTATTGAGGAAACTTAGCAATGAAGAGGCAAGCAGCGTACTGATATCCCAAAGAAAGGAGCCACAAGTTCAGTTTACTAATGATAATGCAAGCATTAATGCTGATTGTGAGGTGTCGAGGATAGTTAGCCACCAAGAGGCAGGCACCGGACCCATATCCAAAATAAAGGAGCCAAAAGTTCATTGTGCTAATGATAATGCAAGAATTAATGCTGATTGTGAGGTATTGAGGATAGTTAACCACCAAGAGGCAGGCTCCGGACCCGTATCCAAAACAAAGGAGCCAAAAGTTCATTTTGCTAATGATAATGCGAGCATTAAGGCTGATTGTCAGGTATCGAGGATAAATAGCCACCAAGAGGCAAGCAGCATGCCCATATCCCAAACGAAGGAGCCAACAGTTCATAACATTCCGGCATTTGCACCTTTTCCAAGGGAAGCTGCTGCGATCCCTCCTGGAAAACCATCAGTTTCTCTGCCGCACAGTAAATCTGATGTAAGAGGAGCACCAGTAGGATCCACTTGCCAACCCCTTGCTTCTGCGACCCCTTCATTGGGTAGTTCAAAGGGACTTAAAAATCTGCATTGGGAAGAGAGGTTTCATCAGCTGCAGTTGCTATTGAGGAAATTGGACCAATCAGACCATGAGGATTATCTCAAGAGTATGTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LIN52

Protein Analysis

535

Amino Acids

57.38

Weight (kDa)

6.4

Isoelectric Point (pI)

36.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 4 cut(s) 218, 746, 857, 1079
AccIII TCCGGA 1 cut(s) 1193
AciI CCGC 2 cut(s) 263, 1415
AclI AACGTT 2 cut(s) 474, 585
AclWI GGATC 6 cut(s) 244, 767, 780, 1378, 1446, 1459
AcsI RAATTY 1 cut(s) 138
AfaI GTAC 3 cut(s) 280, 346, 975
AgsI TTSAA 3 cut(s) 178, 499, 1500
AjnI CCWGG 1 cut(s) 1390
AjuI GAANNNNNNNTTGG 2 cut(s) 27, 59
AluBI AGCT 4 cut(s) 165, 326, 1376, 1543
AluI AGCT 4 cut(s) 165, 326, 1376, 1543
Alw21I GWGCWC 2 cut(s) 167, 1444
AlwI GGATC 6 cut(s) 244, 767, 780, 1378, 1446, 1459
AlwNI CAGNNNCTG 2 cut(s) 95, 326
Aor13HI TCCGGA 1 cut(s) 1193
ApeKI GCWGC 6 cut(s) 636, 969, 1302, 1376, 1379, 1543
ApoI RAATTY 1 cut(s) 138
AseI ATTAAT 5 cut(s) 366, 699, 921, 1032, 1143
AspS9I GGNCC 6 cut(s) 92, 419, 863, 1085, 1196, 1567
AsuC2I CCSGG 1 cut(s) 150
AsuHPI GGTGA 1 cut(s) 500
AvaII GGWCC 6 cut(s) 92, 419, 863, 1085, 1196, 1567
BaeGI GKGCMC 1 cut(s) 150
BamHI GGATCC 2 cut(s) 772, 1451
BanI GGYRCC 4 cut(s) 218, 746, 857, 1079
BanII GRGCYC 1 cut(s) 167
BbsI GAAGAC 1 cut(s) 110
Bbv12I GWGCWC 2 cut(s) 167, 1444
BbvCI CCTCAGC 1 cut(s) 54
BbvI GCAGC 6 cut(s) 648, 981, 1314, 1363, 1366, 1530
BccI CCATC 4 cut(s) 368, 479, 590, 1408
BciT130I CCWGG 1 cut(s) 1392
BciVI GTATCC 1 cut(s) 1213
BcnI CCSGG 1 cut(s) 150
BfaI CTAG 3 cut(s) 69, 207, 570
BfmI CTRYAG 1 cut(s) 1544
BfuI GTATCC 1 cut(s) 1213
BisI GCNGC 7 cut(s) 637, 970, 1303, 1377, 1380, 1415, 1544
BlsI GCNGC 7 cut(s) 638, 971, 1304, 1378, 1381, 1416, 1545
BmcAI AGTACT 2 cut(s) 280, 346
Bme1390I CCNGG 2 cut(s) 150, 1392
Bme18I GGWCC 6 cut(s) 92, 419, 863, 1085, 1196, 1567
BmgT120I GGNCC 6 cut(s) 92, 419, 863, 1085, 1196, 1567
BmrFI CCNGG 2 cut(s) 150, 1392
BmrI ACTGGG 1 cut(s) 267
BmsI GCATC 2 cut(s) 304, 392
BmuI ACTGGG 1 cut(s) 267
BpiI GAAGAC 1 cut(s) 110
BplI GAGNNNNNCTC 4 cut(s) 154, 186, 1175, 1207
Bpu10I CCTNAGC 1 cut(s) 54
BpuEI CTTGAG 1 cut(s) 1577
BpuMI CCSGG 1 cut(s) 150
BsaJI CCNNGG 1 cut(s) 1367
BsaWI WCCGGW 5 cut(s) 416, 749, 860, 1082, 1193
BsaXI ACNNNNNCTCC 2 cut(s) 1431, 1461
Bse1I ACTGG 3 cut(s) 143, 273, 1445
Bse3DI GCAATG 1 cut(s) 961
BseAI TCCGGA 1 cut(s) 1193
BseBI CCWGG 1 cut(s) 1392
BseDI CCNNGG 1 cut(s) 1367
BseMI GCAATG 1 cut(s) 961
BseMII CTCAG 3 cut(s) 45, 51, 228
BseNI ACTGG 3 cut(s) 143, 273, 1445
BseRI GAGGAG 1 cut(s) 1452
BseSI GKGCMC 1 cut(s) 150
BseXI GCAGC 6 cut(s) 648, 981, 1314, 1363, 1366, 1530
BseYI CCCAGC 1 cut(s) 158
Bsh1285I CGRYCG 1 cut(s) 644
BshNI GGYRCC 4 cut(s) 218, 746, 857, 1079
BsiEI CGRYCG 1 cut(s) 644
BsiHKAI GWGCWC 2 cut(s) 167, 1444
BsiSI CCGG 7 cut(s) 150, 417, 750, 861, 1083, 1194, 1349
BslFI GGGAC 1 cut(s) 1518
BsmFI GGGAC 1 cut(s) 1518
Bsp1286I GDGCHC 3 cut(s) 150, 167, 1444
Bsp13I TCCGGA 1 cut(s) 1193
Bsp143I GATC 4 cut(s) 249, 772, 1383, 1451
BspACI CCGC 2 cut(s) 263, 1415
BspCNI CTCAG 3 cut(s) 46, 52, 229
BspEI TCCGGA 1 cut(s) 1193
BspHI TCATGA 1 cut(s) 73
BspMAI CTGCAG 1 cut(s) 1548
BspPI GGATC 6 cut(s) 244, 767, 780, 1378, 1446, 1459
BspQI GCTCTTC 1 cut(s) 172
BspT107I GGYRCC 4 cut(s) 218, 746, 857, 1079
BsrDI GCAATG 1 cut(s) 961
BsrI ACTGG 3 cut(s) 143, 273, 1445
BssECI CCNNGG 1 cut(s) 1367
BssMI GATC 4 cut(s) 249, 772, 1383, 1451
BssT1I CCWWGG 1 cut(s) 1367
Bst2UI CCWGG 1 cut(s) 1392
Bst6I CTCTTC 3 cut(s) 172, 954, 1521
BstDEI CTNAG 6 cut(s) 54, 60, 237, 395, 617, 950
BstKTI GATC 4 cut(s) 252, 775, 1386, 1454
BstMBI GATC 4 cut(s) 249, 772, 1383, 1451
BstMCI CGRYCG 1 cut(s) 644
BstMWI GCNNNNNNNGC 1 cut(s) 1549
BstNI CCWGG 1 cut(s) 1392
BstNSI RCATGY 1 cut(s) 1309
BstSCI CCNGG 2 cut(s) 148, 1390
BstSFI CTRYAG 1 cut(s) 1544
BstSLI GKGCMC 1 cut(s) 150
BstV1I GCAGC 6 cut(s) 648, 981, 1314, 1363, 1366, 1530
BstV2I GAAGAC 1 cut(s) 110
BstX2I RGATCY 2 cut(s) 772, 1451
BstYI RGATCY 2 cut(s) 772, 1451
BsuI GTATCC 1 cut(s) 1213
BtsIMutI CAGTG 5 cut(s) 150, 460, 571, 682, 793
CaiI CAGNNNCTG 2 cut(s) 95, 326
CciI TCATGA 1 cut(s) 73
Cfr13I GGNCC 6 cut(s) 92, 419, 863, 1085, 1196, 1567
CpoI CGGWCCG 1 cut(s) 419
CseI GACGC 1 cut(s) 338
Csp6I GTAC 3 cut(s) 279, 345, 974
CspI CGGWCCG 1 cut(s) 419
CviAII CATG 3 cut(s) 74, 1306, 1580
CviQI GTAC 3 cut(s) 279, 345, 974
DdeI CTNAG 6 cut(s) 54, 60, 237, 395, 617, 950
DpnI GATC 4 cut(s) 251, 774, 1385, 1453
DpnII GATC 4 cut(s) 249, 772, 1383, 1451
Eam1104I CTCTTC 3 cut(s) 172, 954, 1521
EarI CTCTTC 3 cut(s) 172, 954, 1521
Ecl136II GAGCTC 1 cut(s) 165
Eco130I CCWWGG 1 cut(s) 1367
Eco24I GRGCYC 1 cut(s) 167
Eco32I GATATC 4 cut(s) 426, 648, 759, 981
Eco47I GGWCC 6 cut(s) 92, 419, 863, 1085, 1196, 1567
Eco53kI GAGCTC 1 cut(s) 165
EcoICRI GAGCTC 1 cut(s) 165
EcoO109I RGGNCCY 1 cut(s) 92
EcoRI GAATTC 1 cut(s) 138
EcoRII CCWGG 1 cut(s) 1390
EcoRV GATATC 4 cut(s) 426, 648, 759, 981
EcoT14I CCWWGG 1 cut(s) 1367
EcoT38I GRGCYC 1 cut(s) 167
ErhI CCWWGG 1 cut(s) 1367
FaeI CATG 3 cut(s) 77, 1309, 1583
FaqI GGGAC 1 cut(s) 1518
FatI CATG 3 cut(s) 73, 1305, 1579
Fnu4HI GCNGC 7 cut(s) 637, 970, 1303, 1377, 1380, 1415, 1544
FriOI GRGCYC 1 cut(s) 167
Fsp4HI GCNGC 7 cut(s) 637, 970, 1303, 1377, 1380, 1415, 1544
FspBI CTAG 3 cut(s) 69, 207, 570
GluI GCNGC 7 cut(s) 637, 970, 1303, 1377, 1380, 1415, 1544
GsaI CCCAGC 1 cut(s) 162
HapII CCGG 7 cut(s) 150, 417, 750, 861, 1083, 1194, 1349
HgaI GACGC 1 cut(s) 338
Hin1II CATG 3 cut(s) 77, 1309, 1583
HincII GTYRAC 1 cut(s) 1174
HindII GTYRAC 1 cut(s) 1174
HinfI GANTC 1 cut(s) 20
HpaI GTTAAC 1 cut(s) 1174
HpaII CCGG 7 cut(s) 150, 417, 750, 861, 1083, 1194, 1349
HphI GGTGA 1 cut(s) 500
Hpy166II GTNNAC 7 cut(s) 451, 562, 673, 784, 895, 1011, 1174
Hpy188I TCNGA 6 cut(s) 238, 322, 338, 706, 1429, 1576
Hpy188III TCNNGA 5 cut(s) 74, 257, 626, 1194, 1594
Hpy8I GTNNAC 7 cut(s) 451, 562, 673, 784, 895, 1011, 1174
HpyAV CCTTC 3 cut(s) 172, 1318, 1494
HpyCH4IV ACGT 2 cut(s) 474, 585
HpyF10VI GCNNNNNNNGC 1 cut(s) 1549
HpyF3I CTNAG 6 cut(s) 54, 60, 237, 395, 617, 950
HpySE526I ACGT 2 cut(s) 474, 585
Hsp92II CATG 3 cut(s) 77, 1309, 1583
Kpn2I TCCGGA 1 cut(s) 1193
KspAI GTTAAC 1 cut(s) 1174
Kzo9I GATC 4 cut(s) 249, 772, 1383, 1451
LguI GCTCTTC 1 cut(s) 172
Lsp1109I GCAGC 6 cut(s) 648, 981, 1314, 1363, 1366, 1530
LweI GCATC 2 cut(s) 304, 392
MaeI CTAG 3 cut(s) 69, 207, 570
MaeII ACGT 2 cut(s) 474, 585
MalI GATC 4 cut(s) 251, 774, 1385, 1453
MboI GATC 4 cut(s) 249, 772, 1383, 1451
MboII GAAGA 5 cut(s) 115, 159, 511, 971, 1538
MflI RGATCY 2 cut(s) 772, 1451
MhlI GDGCHC 3 cut(s) 150, 167, 1444
MluCI AATT 7 cut(s) 138, 199, 504, 700, 837, 1140, 1562
MroI TCCGGA 1 cut(s) 1193
MspA1I CMGCKG 1 cut(s) 1543
MspI CCGG 7 cut(s) 150, 417, 750, 861, 1083, 1194, 1349
MspR9I CCNGG 2 cut(s) 150, 1392
MvaI CCWGG 1 cut(s) 1392
MwoI GCNNNNNNNGC 1 cut(s) 1549
NciI CCSGG 1 cut(s) 150
NdeII GATC 4 cut(s) 249, 772, 1383, 1451
NlaIII CATG 3 cut(s) 77, 1309, 1583
NspI RCATGY 1 cut(s) 1309
PaeI GCATGC 1 cut(s) 1309
PagI TCATGA 1 cut(s) 73
PciSI GCTCTTC 1 cut(s) 172
PfeI GAWTC 1 cut(s) 20
PflFI GACNNNGTC 1 cut(s) 332
PfoI TCCNGGA 1 cut(s) 1390
PkrI GCNGC 7 cut(s) 638, 971, 1304, 1378, 1381, 1416, 1545
PpuMI RGGWCCY 1 cut(s) 92
PshBI ATTAAT 5 cut(s) 366, 699, 921, 1032, 1143
Psp124BI GAGCTC 1 cut(s) 167
Psp1406I AACGTT 2 cut(s) 474, 585
Psp5II RGGWCCY 1 cut(s) 92
Psp6I CCWGG 1 cut(s) 1390
PspFI CCCAGC 1 cut(s) 158
PspGI CCWGG 1 cut(s) 1390
PspPI GGNCC 6 cut(s) 92, 419, 863, 1085, 1196, 1567
PspPPI RGGWCCY 1 cut(s) 92
PstI CTGCAG 1 cut(s) 1548
PstNI CAGNNNCTG 2 cut(s) 95, 326
PsuI RGATCY 2 cut(s) 772, 1451
PsyI GACNNNGTC 1 cut(s) 332
PvuII CAGCTG 1 cut(s) 1543
RsaI GTAC 3 cut(s) 280, 346, 975
RsaNI GTAC 3 cut(s) 279, 345, 974
Rsr2I CGGWCCG 1 cut(s) 419
RsrII CGGWCCG 1 cut(s) 419
SacI GAGCTC 1 cut(s) 167
SapI GCTCTTC 1 cut(s) 172
SatI GCNGC 7 cut(s) 637, 970, 1303, 1377, 1380, 1415, 1544
Sau3AI GATC 4 cut(s) 249, 772, 1383, 1451
Sau96I GGNCC 6 cut(s) 92, 419, 863, 1085, 1196, 1567
ScaI AGTACT 2 cut(s) 280, 346
ScrFI CCNGG 2 cut(s) 150, 1392
SduI GDGCHC 3 cut(s) 150, 167, 1444
SfaNI GCATC 2 cut(s) 304, 392
SfcI CTRYAG 1 cut(s) 1544
SinI GGWCC 6 cut(s) 92, 419, 863, 1085, 1196, 1567
SmlI CTYRAG 1 cut(s) 1592
SmoI CTYRAG 1 cut(s) 1592
SphI GCATGC 1 cut(s) 1309
Sse9I AATT 7 cut(s) 138, 199, 504, 700, 837, 1140, 1562
SsiI CCGC 2 cut(s) 263, 1415
SspMI CTAG 3 cut(s) 69, 207, 570
SstI GAGCTC 1 cut(s) 167
StyD4I CCNGG 2 cut(s) 148, 1390
StyI CCWWGG 1 cut(s) 1367
TaiI ACGT 2 cut(s) 477, 588
TaqI TCGA 3 cut(s) 386, 1052, 1274
TaqII GACCGA 2 cut(s) 436, 658
TasI AATT 7 cut(s) 138, 199, 504, 700, 837, 1140, 1562
TatI WGTACW 2 cut(s) 278, 344
TauI GCSGC 1 cut(s) 1417
TfiI GAWTC 1 cut(s) 20
TscAI CASTG 5 cut(s) 150, 460, 571, 682, 793
TseI GCWGC 6 cut(s) 636, 969, 1302, 1376, 1379, 1543
TspDTI ATGAA 7 cut(s) 48, 972, 1106, 1217, 1328, 1476, 1526
TspRI CASTG 5 cut(s) 150, 460, 571, 682, 793
Tth111I GACNNNGTC 1 cut(s) 332
VpaK11BI GGWCC 6 cut(s) 92, 419, 863, 1085, 1196, 1567
VspI ATTAAT 5 cut(s) 366, 699, 921, 1032, 1143
XapI RAATTY 1 cut(s) 138
XceI RCATGY 1 cut(s) 1309
XspI CTAG 3 cut(s) 69, 207, 570
ZrmI AGTACT 2 cut(s) 280, 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.