MD05G1134400.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0000902
Physical Location & Seq
Forward (+)
26284698 .. 26288508
3811 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1134400.v1.1.491

Sequence Viewer

Length: 786 bp
ATGGGAACTACAGAATCTGAGTCGTCTATTCATGATAAACAACAGCCAGTTCCTGTAAAGAAGACAGTGTTAAGAGATCTGCAAAATGTGCCCAAGGATAGACCCCCTAGTAATGCCCCTAGAGTTTCGGGCATCAAGAGACCTTTACCTGAGCAGCCAATGAGCCCTCCTCAACACCAATCCCCCAGTAGCAGTGCTGCAAATGCGCAGCTTGTCTATGTTCGTAGAAAATCTGAAGCAGATGCAGTCAGAAATAGTACATGTGATAATGCAAGCATTAATGCTGAGTGTCAGGTGTCAAGGAAACTTAGTCACCATGAGGCAAGCACCCGACCCATACCCCAAACAAAGGAAACAAAAGTTTATTGTGTGCCGGCTTTTGCACCTTTTCCAGTGGCAGCTTCAACCATTCCGCCTGGAAAACCTTCAGTTCCGGTCCTGCCTAGTAAGTCTGGTACTGGACTACCACCAGCAGGAGCCAATGGTCATCCCCATACTTCTTCTACAGTGCCTTGTTCATTGGGTCTAAAATATCTGCACTGGGAAGAGCGATTCCATCAATTGCAGTTGCTATTGAGGAACTTGGACCAATCAGAACATGAGGATTATATCCAGATGCTGCGGTCGCTCTCCTCGGTTGAACTGAGCAGACTTGCAGTTGAGTTGGAAAAGAGATCAATTCAACTTTCACTGGAGGAAGCAAAAGAGTTGCAGCACGTTGGGCGATTGAATGTTCTGGGGAAATCTGCGACGCAGTTTAAAGTGCCCTCAACTCAGGAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LIN52

Protein Analysis

262

Amino Acids

28.64

Weight (kDa)

9.03

Isoelectric Point (pI)

68.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 207
AciI CCGC 2 cut(s) 413, 622
AcuI CTGAAG 2 cut(s) 255, 411
AfaI GTAC 2 cut(s) 259, 457
AfiI CCNNNNNNNGG 2 cut(s) 349, 473
AflIII ACRYGT 1 cut(s) 260
AgsI TTSAA 4 cut(s) 405, 641, 683, 730
AjnI CCWGG 1 cut(s) 415
AluBI AGCT 2 cut(s) 211, 401
AluI AGCT 2 cut(s) 211, 401
Alw26I GTCTC 1 cut(s) 133
AlwNI CAGNNNCTG 3 cut(s) 17, 53, 619
ApeKI GCWGC 6 cut(s) 154, 197, 208, 398, 619, 712
AseI ATTAAT 1 cut(s) 279
Asp700I GAANNNNTTC 1 cut(s) 424
AspLEI GCGC 1 cut(s) 208
AspS9I GGNCC 2 cut(s) 436, 586
AsuHPI GGTGA 1 cut(s) 305
AvaII GGWCC 2 cut(s) 436, 586
BaeGI GKGCMC 2 cut(s) 93, 768
BanII GRGCYC 1 cut(s) 167
BbsI GAAGAC 1 cut(s) 68
BbvI GCAGC 6 cut(s) 166, 184, 220, 410, 606, 724
BccI CCATC 1 cut(s) 564
BciT130I CCWGG 1 cut(s) 417
BcoDI GTCTC 1 cut(s) 133
BfaI CTAG 3 cut(s) 108, 120, 444
BfmI CTRYAG 2 cut(s) 9, 504
BglII AGATCT 1 cut(s) 76
BisI GCNGC 6 cut(s) 155, 198, 209, 399, 620, 713
BlsI GCNGC 6 cut(s) 156, 199, 210, 400, 621, 714
Bme1390I CCNGG 1 cut(s) 417
Bme18I GGWCC 2 cut(s) 436, 586
BmgT120I GGNCC 2 cut(s) 436, 586
BmiI GGNNCC 1 cut(s) 478
BmrFI CCNGG 1 cut(s) 417
BmrI ACTGGG 2 cut(s) 180, 550
BmsI GCATC 3 cut(s) 141, 232, 606
BmuI ACTGGG 2 cut(s) 180, 550
BpiI GAAGAC 1 cut(s) 68
BplI GAGNNNNNCTC 2 cut(s) 154, 186
BpmI CTGGAG 1 cut(s) 713
Bpu10I CCTNAGC 1 cut(s) 150
BsaI GGTCTC 1 cut(s) 133
BsaJI CCNNGG 2 cut(s) 93, 633
BsaWI WCCGGW 1 cut(s) 433
Bsc4I CCNNNNNNNGG 2 cut(s) 349, 473
Bse118I RCCGGY 1 cut(s) 373
Bse1I ACTGG 6 cut(s) 47, 186, 392, 463, 545, 696
BseBI CCWGG 1 cut(s) 417
BseDI CCNNGG 2 cut(s) 93, 633
BseGI GGATG 1 cut(s) 487
BseLI CCNNNNNNNGG 2 cut(s) 349, 473
BseMII CTCAG 4 cut(s) 9, 141, 276, 635
BseNI ACTGG 6 cut(s) 47, 186, 392, 463, 545, 696
BseRI GAGGAG 2 cut(s) 159, 622
BseSI GKGCMC 2 cut(s) 93, 768
BseXI GCAGC 6 cut(s) 166, 184, 220, 410, 606, 724
BsgI GTGCAG 1 cut(s) 521
Bsh1285I CGRYCG 1 cut(s) 626
BsiEI CGRYCG 1 cut(s) 626
BsiSI CCGG 2 cut(s) 374, 434
BslI CCNNNNNNNGG 2 cut(s) 349, 473
BsmAI GTCTC 1 cut(s) 133
Bso31I GGTCTC 1 cut(s) 133
Bsp1286I GDGCHC 3 cut(s) 93, 167, 768
Bsp143I GATC 2 cut(s) 76, 674
BspACI CCGC 2 cut(s) 413, 622
BspCNI CTCAG 4 cut(s) 10, 142, 277, 636
BspHI TCATGA 1 cut(s) 31
BspLI GGNNCC 1 cut(s) 478
BspQI GCTCTTC 1 cut(s) 540
BspTNI GGTCTC 1 cut(s) 133
BsrFI RCCGGY 1 cut(s) 373
BsrI ACTGG 6 cut(s) 47, 186, 392, 463, 545, 696
BssAI RCCGGY 1 cut(s) 373
BssECI CCNNGG 2 cut(s) 93, 633
BssMI GATC 2 cut(s) 76, 674
BssT1I CCWWGG 1 cut(s) 93
Bst2UI CCWGG 1 cut(s) 417
Bst4CI ACNGT 2 cut(s) 67, 508
Bst6I CTCTTC 1 cut(s) 540
BstAPI GCANNNNNTGC 1 cut(s) 88
BstC8I GCNNGC 3 cut(s) 274, 325, 375
BstDEI CTNAG 6 cut(s) 18, 150, 285, 308, 644, 774
BstF5I GGATG 1 cut(s) 487
BstHHI GCGC 1 cut(s) 208
BstKTI GATC 2 cut(s) 79, 677
BstMAI GTCTC 1 cut(s) 133
BstMBI GATC 2 cut(s) 76, 674
BstMCI CGRYCG 1 cut(s) 626
BstMWI GCNNNNNNNGC 4 cut(s) 88, 203, 625, 721
BstNI CCWGG 1 cut(s) 417
BstNSI RCATGY 1 cut(s) 264
BstSCI CCNGG 1 cut(s) 415
BstSFI CTRYAG 2 cut(s) 9, 504
BstSLI GKGCMC 2 cut(s) 93, 768
BstV1I GCAGC 6 cut(s) 166, 184, 220, 410, 606, 724
BstV2I GAAGAC 1 cut(s) 68
BstX2I RGATCY 1 cut(s) 76
BstYI RGATCY 1 cut(s) 76
BtsCI GGATG 1 cut(s) 487
BtsI GCAGTG 1 cut(s) 199
BtsIMutI CAGTG 6 cut(s) 72, 199, 399, 513, 538, 689
Cac8I GCNNGC 3 cut(s) 274, 325, 375
CaiI CAGNNNCTG 3 cut(s) 17, 53, 619
CciI TCATGA 1 cut(s) 31
CfoI GCGC 1 cut(s) 208
Cfr10I RCCGGY 1 cut(s) 373
Cfr13I GGNCC 2 cut(s) 436, 586
CseI GACGC 1 cut(s) 760
Csp6I GTAC 2 cut(s) 258, 456
CviAII CATG 4 cut(s) 32, 261, 317, 599
CviJI RGCY 7 cut(s) 46, 157, 165, 211, 377, 401, 479
CviKI_1 RGCY 7 cut(s) 46, 157, 165, 211, 377, 401, 479
CviQI GTAC 2 cut(s) 258, 456
DdeI CTNAG 6 cut(s) 18, 150, 285, 308, 644, 774
DpnI GATC 2 cut(s) 78, 676
DpnII GATC 2 cut(s) 76, 674
DraI TTTAAA 1 cut(s) 760
Eam1104I CTCTTC 1 cut(s) 540
EarI CTCTTC 1 cut(s) 540
EciI GGCGGA 1 cut(s) 402
Eco130I CCWWGG 1 cut(s) 93
Eco24I GRGCYC 1 cut(s) 167
Eco31I GGTCTC 1 cut(s) 133
Eco47I GGWCC 2 cut(s) 436, 586
Eco57I CTGAAG 2 cut(s) 255, 411
EcoRII CCWGG 1 cut(s) 415
EcoT14I CCWWGG 1 cut(s) 93
EcoT38I GRGCYC 1 cut(s) 167
ErhI CCWWGG 1 cut(s) 93
FaeI CATG 4 cut(s) 35, 264, 320, 602
FaiI YATR 8 cut(s) 33, 219, 262, 318, 338, 495, 600, 609
FatI CATG 4 cut(s) 31, 260, 316, 598
Fnu4HI GCNGC 6 cut(s) 155, 198, 209, 399, 620, 713
FokI GGATG 1 cut(s) 474
FriOI GRGCYC 1 cut(s) 167
Fsp4HI GCNGC 6 cut(s) 155, 198, 209, 399, 620, 713
FspBI CTAG 3 cut(s) 108, 120, 444
FspI TGCGCA 1 cut(s) 207
GlaI GCGC 1 cut(s) 207
GluI GCNGC 6 cut(s) 155, 198, 209, 399, 620, 713
GsuI CTGGAG 1 cut(s) 713
HapII CCGG 2 cut(s) 374, 434
HgaI GACGC 1 cut(s) 760
HhaI GCGC 1 cut(s) 208
Hin1II CATG 4 cut(s) 35, 264, 320, 602
Hin6I GCGC 1 cut(s) 206
HinP1I GCGC 1 cut(s) 206
HinfI GANTC 3 cut(s) 14, 20, 552
HpaII CCGG 2 cut(s) 374, 434
HphI GGTGA 1 cut(s) 305
Hpy188I TCNGA 4 cut(s) 19, 235, 251, 595
Hpy188III TCNNGA 4 cut(s) 32, 136, 613, 776
Hpy99I CGWCG 1 cut(s) 754
HpyAV CCTTC 1 cut(s) 435
HpyCH4III ACNGT 2 cut(s) 67, 508
HpyCH4IV ACGT 1 cut(s) 717
HpyCH4V TGCA 9 cut(s) 82, 200, 245, 272, 383, 538, 565, 656, 712
HpyF10VI GCNNNNNNNGC 4 cut(s) 88, 203, 625, 721
HpyF3I CTNAG 6 cut(s) 18, 150, 285, 308, 644, 774
HpySE526I ACGT 1 cut(s) 717
Hsp92II CATG 4 cut(s) 35, 264, 320, 602
HspAI GCGC 1 cut(s) 206
KroI GCCGGC 1 cut(s) 373
KroNI GCCGGC 1 cut(s) 375
Kzo9I GATC 2 cut(s) 76, 674
LguI GCTCTTC 1 cut(s) 540
LmnI GCTCC 1 cut(s) 476
Lsp1109I GCAGC 6 cut(s) 166, 184, 220, 410, 606, 724
LweI GCATC 3 cut(s) 141, 232, 606
MaeI CTAG 3 cut(s) 108, 120, 444
MaeII ACGT 1 cut(s) 717
MaeIII GTNAC 1 cut(s) 311
MalI GATC 2 cut(s) 78, 676
MboI GATC 2 cut(s) 76, 674
MboII GAAGA 3 cut(s) 73, 492, 557
MfeI CAATTG 1 cut(s) 560
MflI RGATCY 1 cut(s) 76
MhlI GDGCHC 3 cut(s) 93, 167, 768
MluCI AATT 2 cut(s) 560, 678
MlyI GAGTC 1 cut(s) 29
MmeI TCCRAC 1 cut(s) 645
MnlI CCTC 8 cut(s) 177, 180, 313, 570, 595, 643, 688, 778
MroNI GCCGGC 1 cut(s) 373
MroXI GAANNNNTTC 1 cut(s) 424
MseI TTAA 3 cut(s) 71, 279, 759
MspI CCGG 2 cut(s) 374, 434
MspR9I CCNGG 1 cut(s) 417
MunI CAATTG 1 cut(s) 560
MvaI CCWGG 1 cut(s) 417
MwoI GCNNNNNNNGC 4 cut(s) 88, 203, 625, 721
NaeI GCCGGC 1 cut(s) 375
NdeII GATC 2 cut(s) 76, 674
NgoMIV GCCGGC 1 cut(s) 373
NlaIII CATG 4 cut(s) 35, 264, 320, 602
NlaIV GGNNCC 1 cut(s) 478
NmuCI GTSAC 1 cut(s) 311
NsbI TGCGCA 1 cut(s) 207
NspI RCATGY 1 cut(s) 264
PagI TCATGA 1 cut(s) 31
PciI ACATGT 1 cut(s) 260
PciSI GCTCTTC 1 cut(s) 540
PdiI GCCGGC 1 cut(s) 375
PdmI GAANNNNTTC 1 cut(s) 424
PfeI GAWTC 2 cut(s) 14, 552
PkrI GCNGC 6 cut(s) 156, 199, 210, 400, 621, 714
PleI GAGTC 1 cut(s) 28
PpsI GAGTC 1 cut(s) 28
PscI ACATGT 1 cut(s) 260
PshBI ATTAAT 1 cut(s) 279
Psp6I CCWGG 1 cut(s) 415
PspGI CCWGG 1 cut(s) 415
PspN4I GGNNCC 1 cut(s) 478
PspPI GGNCC 2 cut(s) 436, 586
PstNI CAGNNNCTG 3 cut(s) 17, 53, 619
PsuI RGATCY 1 cut(s) 76
RsaI GTAC 2 cut(s) 259, 457
RsaNI GTAC 2 cut(s) 258, 456
SapI GCTCTTC 1 cut(s) 540
SaqAI TTAA 3 cut(s) 71, 279, 759
SatI GCNGC 6 cut(s) 155, 198, 209, 399, 620, 713
Sau3AI GATC 2 cut(s) 76, 674
Sau96I GGNCC 2 cut(s) 436, 586
SchI GAGTC 1 cut(s) 29
ScrFI CCNGG 1 cut(s) 417
SduI GDGCHC 3 cut(s) 93, 167, 768
SetI ASST 8 cut(s) 145, 151, 213, 297, 388, 403, 427, 720
SfaNI GCATC 3 cut(s) 141, 232, 606
SfcI CTRYAG 2 cut(s) 9, 504
SinI GGWCC 2 cut(s) 436, 586
Sse9I AATT 2 cut(s) 560, 678
SsiI CCGC 2 cut(s) 413, 622
SspMI CTAG 3 cut(s) 108, 120, 444
StyD4I CCNGG 1 cut(s) 415
StyI CCWWGG 1 cut(s) 93
TaaI ACNGT 2 cut(s) 67, 508
TaiI ACGT 1 cut(s) 720
TasI AATT 2 cut(s) 560, 678
TatI WGTACW 1 cut(s) 257
TfiI GAWTC 2 cut(s) 14, 552
Tru1I TTAA 3 cut(s) 71, 279, 759
Tru9I TTAA 3 cut(s) 71, 279, 759
TscAI CASTG 6 cut(s) 72, 199, 399, 513, 545, 696
TseFI GTSAC 1 cut(s) 311
TseI GCWGC 6 cut(s) 154, 197, 208, 398, 619, 712
Tsp45I GTSAC 1 cut(s) 311
TspDTI ATGAA 2 cut(s) 20, 507
TspRI CASTG 6 cut(s) 72, 199, 399, 513, 545, 696
VpaK11BI GGWCC 2 cut(s) 436, 586
VspI ATTAAT 1 cut(s) 279
XceI RCATGY 1 cut(s) 264
XmnI GAANNNNTTC 1 cut(s) 424
XspI CTAG 3 cut(s) 108, 120, 444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.