Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000902

Physical Location & Seq

Genomic Coordinates Reverse (-)

37743141 .. 37745005

Gene Structure 1865 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002666

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGTGAACTCTAGCCTCGACAACAATGCACTGGGTGACAGTGTGGTTAATTCGCCTATCTCTCATAAACAATCAACATTAAGAATGAAAAAGGTGGCATTGCGAGATGTGCAGAATGATAGTAGGATCTATATGCCTACTCATCCTGAAAATTCTTGTAATCTAGGACGGCAAGTTGGGGATCTTATTAAGGTTTCTGGAACTAAGATAGTCACCCCTGAGCGTCCTCGGAGCTCCCCTTGCCACCAGTTCTCGAACATCAGTGGTTTATGTGAGCAAGCACTAGGCAAGAGAAGAATTCAAGCCGTGACAGACCAAAGTGCTGATTGCCTCAATTCCAAACGACATTTGCAGAAGCAGGCAGGTGTAACTGATGACAGAACCAAGAAGCAGGAGAATGAGAGTCCTTGTGCACCTTCATTTGCACCAAACTTTTTGACTTCTCCCATTTCCTTTTCACCTGGTAAACCACCAGTTCCACTTTTTCTTGGGAAGTCTAGTAATGTGTCGCCAGGTGCTCGTTCCAGGCACCTTAAATTTACTCCTGATCGTATGGTTTCCAACTTGGTTGATCCTAAGAGGAACAATGATGAGAACAGGACAGAGCGGTTTCTATGTCTGCAGAATCTCTTGAAGCTCATTGATGAGTCTAATCAGGGTGAATATATCCAGATGCTTCGTTGTTTATCATCATCTGAGCTTAACAGACATGCAGTTGAGCTAGAGAAACGATCAATGCTGCTATCAGTCGAGGAAGAAGCACAAGTTGAGAAACATTACTGGCCTTATAGCCTTTGTCCGCATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIN52

Protein Analysis

270

Amino Acids

30.19

Weight (kDa)

8.89

Isoelectric Point (pI)

66.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000902)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38280
fragaria_vesca	FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_5g25250 FvH4_5g25250 FvH4_5g25250 FvH4_5g25250 FvH4_5g25250 FvH4_5g25250 FvH4_5g25250
malus_domestica	MD05G1134400.v1.1 MD06G1009100.v1.1 MD10G1139500.v1.1
prunus_persica	Prupe.5G011500_v2.0.a1 Prupe.8G178200_v2.0.a1 Prupe.8G178200_v2.0.a1 Prupe.8G178200_v2.0.a1 Prupe.8G178200_v2.0.a1 Prupe.8G178200_v2.0.a1 Prupe.8G178200_v2.0.a1
pyrus_communis	pycom05g13100 pycom06g00760 pycom10g11850
rosa_chinensis	RchiOBHm_Chr6g0280681 RchiOBHm_Chr7g0215391
rosa_laevigata	RLG00000002666 RLG00000013036
rosa_multiflora	Rmu_sc0000355.1_g000008 Rmu_sc0000976.1_g000009
rosa_roxburghii	Rroxscaffold_3G00244230 Rroxscaffold_7G00187760
rosa_rugosa	Rorug06G0133800 Rorug06G0133800 Rorug06G0133800 Rorug06G0133800 Rorug07G0152800 Rorug07G0152900 Rorug07G0153000 Rorug07G0153100
rosa_samantha	Rh6AG246400 Rh6BG248600 Rh6CG249900 Rh6DG241300 Rh7AG289600 Rh7BG281500 Rh7CG309200 Rh7DG293100
rosa_wichuraiana	Rw6G021320 Rw7G024740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	353
Acc36I	ACCTGC	1 cut(s)	353
AccB1I	GGYRCC	1 cut(s)	528
AccBSI	CCGCTC	1 cut(s)	607
AciI	CCGC	2 cut(s)	607, 800
AclWI	GGATC	3 cut(s)	134, 189, 566
AcsI	RAATTY	3 cut(s)	151, 297, 536
AdeI	CACNNNGTG	1 cut(s)	35
AgsI	TTSAA	2 cut(s)	302, 634
AjnI	CCWGG	3 cut(s)	460, 511, 524
AluBI	AGCT	4 cut(s)	234, 637, 700, 721
AluI	AGCT	4 cut(s)	234, 637, 700, 721
Alw21I	GWGCWC	3 cut(s)	236, 415, 520
Alw44I	GTGCAC	1 cut(s)	411
AlwI	GGATC	3 cut(s)	134, 189, 566
AoxI	GGCC	1 cut(s)	782
ApaLI	GTGCAC	1 cut(s)	411
ApeKI	GCWGC	1 cut(s)	739
ApoI	RAATTY	3 cut(s)	151, 297, 536
AsuHPI	GGTGA	5 cut(s)	16, 47, 205, 450, 671
BaeGI	GKGCMC	1 cut(s)	415
BanI	GGYRCC	1 cut(s)	528
BanII	GRGCYC	1 cut(s)	236
Bbv12I	GWGCWC	3 cut(s)	236, 415, 520
BbvI	GCAGC	1 cut(s)	726
BceAI	ACGGC	2 cut(s)	185, 290
BcgI	CGANNNNNNTGC	2 cut(s)	8, 42
BciT130I	CCWGG	3 cut(s)	462, 513, 526
BfaI	CTAG	5 cut(s)	12, 164, 284, 498, 722
BfmI	CTRYAG	1 cut(s)	620
BfuAI	ACCTGC	1 cut(s)	353
BisI	GCNGC	1 cut(s)	740
BlsI	GCNGC	1 cut(s)	741
Bme1390I	CCNGG	3 cut(s)	462, 513, 526
BmiI	GGNNCC	1 cut(s)	530
BmrFI	CCNGG	3 cut(s)	462, 513, 526
BmrI	ACTGGG	1 cut(s)	41
BmsI	GCATC	1 cut(s)	663
BmuI	ACTGGG	1 cut(s)	41
Bpu10I	CCTNAGC	1 cut(s)	219
BsaJI	CCNNGG	1 cut(s)	227
Bse1I	ACTGG	4 cut(s)	36, 247, 473, 785
Bse3DI	GCAATG	1 cut(s)	98
BseBI	CCWGG	3 cut(s)	462, 513, 526
BseDI	CCNNGG	1 cut(s)	227
BseGI	GGATG	1 cut(s)	142
BseMI	GCAATG	1 cut(s)	98
BseMII	CTCAG	2 cut(s)	210, 687
BseNI	ACTGG	4 cut(s)	36, 247, 473, 785
BseSI	GKGCMC	1 cut(s)	415
BseXI	GCAGC	1 cut(s)	726
BsgI	GTGCAG	1 cut(s)	131
BshFI	GGCC	1 cut(s)	784
BshNI	GGYRCC	1 cut(s)	528
BsiHKAI	GWGCWC	3 cut(s)	236, 415, 520
BsnI	GGCC	1 cut(s)	784
Bsp1286I	GDGCHC	3 cut(s)	236, 415, 520
Bsp143I	GATC	5 cut(s)	126, 181, 547, 571, 731
BspACI	CCGC	2 cut(s)	607, 800
BspANI	GGCC	1 cut(s)	784
BspCNI	CTCAG	2 cut(s)	211, 688
BspLI	GGNNCC	1 cut(s)	530
BspMAI	CTGCAG	1 cut(s)	624
BspMI	ACCTGC	1 cut(s)	353
BspPI	GGATC	3 cut(s)	134, 189, 566
BspT107I	GGYRCC	1 cut(s)	528
BsrBI	CCGCTC	1 cut(s)	607
BsrDI	GCAATG	1 cut(s)	98
BsrI	ACTGG	4 cut(s)	36, 247, 473, 785
BssECI	CCNNGG	1 cut(s)	227
BssMI	GATC	5 cut(s)	126, 181, 547, 571, 731
Bst2UI	CCWGG	3 cut(s)	462, 513, 526
Bst4CI	ACNGT	1 cut(s)	41
BstC8I	GCNNGC	2 cut(s)	279, 360
BstDEI	CTNAG	4 cut(s)	204, 219, 576, 696
BstF5I	GGATG	1 cut(s)	142
BstKTI	GATC	5 cut(s)	129, 184, 550, 574, 734
BstMBI	GATC	5 cut(s)	126, 181, 547, 571, 731
BstMWI	GCNNNNNNNGC	2 cut(s)	109, 240
BstNI	CCWGG	3 cut(s)	462, 513, 526
BstNSI	RCATGY	1 cut(s)	713
BstSCI	CCNGG	3 cut(s)	460, 511, 524
BstSFI	CTRYAG	1 cut(s)	620
BstSLI	GKGCMC	1 cut(s)	415
BstV1I	GCAGC	1 cut(s)	726
BstX2I	RGATCY	2 cut(s)	126, 181
BstYI	RGATCY	2 cut(s)	126, 181
BsuRI	GGCC	1 cut(s)	784
BtsCI	GGATG	1 cut(s)	142
BtsIMutI	CAGTG	3 cut(s)	29, 46, 268
BveI	ACCTGC	1 cut(s)	353
Cac8I	GCNNGC	2 cut(s)	279, 360
CseI	GACGC	1 cut(s)	212
CsiI	ACCWGGT	1 cut(s)	460
CviAII	CATG	2 cut(s)	710, 803
CviJI	RGCY	8 cut(s)	15, 234, 305, 637, 700, 721, 784, 792
CviKI_1	RGCY	8 cut(s)	15, 234, 305, 637, 700, 721, 784, 792
DdeI	CTNAG	4 cut(s)	204, 219, 576, 696
DpnI	GATC	5 cut(s)	128, 183, 549, 573, 733
DpnII	GATC	5 cut(s)	126, 181, 547, 571, 731
DraIII	CACNNNGTG	1 cut(s)	35
Ecl136II	GAGCTC	1 cut(s)	234
Eco24I	GRGCYC	1 cut(s)	236
Eco53kI	GAGCTC	1 cut(s)	234
EcoICRI	GAGCTC	1 cut(s)	234
EcoRI	GAATTC	1 cut(s)	297
EcoRII	CCWGG	3 cut(s)	460, 511, 524
EcoT38I	GRGCYC	1 cut(s)	236
FaeI	CATG	2 cut(s)	713, 806
FatI	CATG	2 cut(s)	709, 802
Fnu4HI	GCNGC	1 cut(s)	740
FokI	GGATG	1 cut(s)	129
FriOI	GRGCYC	1 cut(s)	236
Fsp4HI	GCNGC	1 cut(s)	740
FspBI	CTAG	5 cut(s)	12, 164, 284, 498, 722
GluI	GCNGC	1 cut(s)	740
HaeIII	GGCC	1 cut(s)	784
HgaI	GACGC	1 cut(s)	212
Hin1II	CATG	2 cut(s)	713, 806
HinfI	GANTC	3 cut(s)	403, 625, 647
HphI	GGTGA	5 cut(s)	16, 47, 205, 450, 671
Hpy166II	GTNNAC	3 cut(s)	7, 413, 467
Hpy188I	TCNGA	2 cut(s)	231, 697
Hpy188III	TCNNGA	6 cut(s)	146, 198, 253, 545, 631, 670
Hpy8I	GTNNAC	3 cut(s)	7, 413, 467
HpyAV	CCTTC	1 cut(s)	426
HpyCH4III	ACNGT	1 cut(s)	41
HpyCH4V	TGCA	7 cut(s)	29, 112, 352, 413, 425, 622, 713
HpyF10VI	GCNNNNNNNGC	2 cut(s)	109, 240
HpyF3I	CTNAG	4 cut(s)	204, 219, 576, 696
Hsp92II	CATG	2 cut(s)	713, 806
Kzo9I	GATC	5 cut(s)	126, 181, 547, 571, 731
LmnI	GCTCC	2 cut(s)	231, 239
Lsp1109I	GCAGC	1 cut(s)	726
LweI	GCATC	1 cut(s)	663
MabI	ACCWGGT	1 cut(s)	460
MaeI	CTAG	5 cut(s)	12, 164, 284, 498, 722
MaeIII	GTNAC	4 cut(s)	35, 211, 307, 367
MalI	GATC	5 cut(s)	128, 183, 549, 573, 733
MbiI	CCGCTC	1 cut(s)	607
MboI	GATC	5 cut(s)	126, 181, 547, 571, 731
MboII	GAAGA	2 cut(s)	306, 767
MflI	RGATCY	2 cut(s)	126, 181
MhlI	GDGCHC	3 cut(s)	236, 415, 520
MluCI	AATT	5 cut(s)	49, 151, 297, 334, 536
MlyI	GAGTC	2 cut(s)	412, 656
MmeI	TCCRAC	1 cut(s)	585
MnlI	CCTC	5 cut(s)	26, 237, 341, 573, 745
MseI	TTAA	5 cut(s)	48, 80, 189, 534, 702
MspR9I	CCNGG	3 cut(s)	462, 513, 526
MvaI	CCWGG	3 cut(s)	462, 513, 526
MwoI	GCNNNNNNNGC	2 cut(s)	109, 240
NdeII	GATC	5 cut(s)	126, 181, 547, 571, 731
NlaIII	CATG	2 cut(s)	713, 806
NlaIV	GGNNCC	1 cut(s)	530
NmuCI	GTSAC	3 cut(s)	35, 211, 307
NspI	RCATGY	1 cut(s)	713
PaqCI	CACCTGC	1 cut(s)	353
PfeI	GAWTC	1 cut(s)	625
PkrI	GCNGC	1 cut(s)	741
PleI	GAGTC	2 cut(s)	411, 655
PpsI	GAGTC	2 cut(s)	411, 655
Psp124BI	GAGCTC	1 cut(s)	236
Psp6I	CCWGG	3 cut(s)	460, 511, 524
PspGI	CCWGG	3 cut(s)	460, 511, 524
PspN4I	GGNNCC	1 cut(s)	530
PstI	CTGCAG	1 cut(s)	624
PsuI	RGATCY	2 cut(s)	126, 181
SacI	GAGCTC	1 cut(s)	236
SaqAI	TTAA	5 cut(s)	48, 80, 189, 534, 702
SatI	GCNGC	1 cut(s)	740
Sau3AI	GATC	5 cut(s)	126, 181, 547, 571, 731
SchI	GAGTC	2 cut(s)	412, 656
ScrFI	CCNGG	3 cut(s)	462, 513, 526
SduI	GDGCHC	3 cut(s)	236, 415, 520
SexAI	ACCWGGT	1 cut(s)	460
SfaNI	GCATC	1 cut(s)	663
SfcI	CTRYAG	1 cut(s)	620
Sse9I	AATT	5 cut(s)	49, 151, 297, 334, 536
SsiI	CCGC	2 cut(s)	607, 800
SspMI	CTAG	5 cut(s)	12, 164, 284, 498, 722
SstI	GAGCTC	1 cut(s)	236
StyD4I	CCNGG	3 cut(s)	460, 511, 524
TaaI	ACNGT	1 cut(s)	41
TaqI	TCGA	3 cut(s)	18, 254, 750
TasI	AATT	5 cut(s)	49, 151, 297, 334, 536
TfiI	GAWTC	1 cut(s)	625
Tru1I	TTAA	5 cut(s)	48, 80, 189, 534, 702
Tru9I	TTAA	5 cut(s)	48, 80, 189, 534, 702
TscAI	CASTG	3 cut(s)	36, 46, 268
TseFI	GTSAC	3 cut(s)	35, 211, 307
TseI	GCWGC	1 cut(s)	739
Tsp45I	GTSAC	3 cut(s)	35, 211, 307
TspDTI	ATGAA	2 cut(s)	101, 408
TspRI	CASTG	3 cut(s)	36, 46, 268
VneI	GTGCAC	1 cut(s)	411
XapI	RAATTY	3 cut(s)	151, 297, 536
XceI	RCATGY	1 cut(s)	713
XspI	CTAG	5 cut(s)	12, 164, 284, 498, 722

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.