Rorug07G0152900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000902
Physical Location & Seq
Reverse (-)
12144700 .. 12145284
585 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0152900.1

Sequence Viewer

Length: 585 bp
ATGGCAGATTTAGAGAGCCAGGTAGCACCAAGCAACCTCCGCAAAGAAAGAACCAGCAACTGCTTCATCTACTGTTTGGTGGGGTTCATGATCTTATGCTCTGCCGTCTTGGTTTTCGCAGTACTTATTCTCCATATCAAACCTCCCGAGGTCAAACTGAGATTAATCAACGTAAAGGACCTCAACGACTCACCTTGGCCTCCTTCCTTTAACACAACTTTGGCTGCGGAGATGACTGTGAAGAACCCTAACTTCGGGGTCTACGAGTTCGAGCCGAGCACGGTGAGTTTCTTGTACTGTGGAAGCAGAGTCGGGAGTTCAGTATTGGTGATGGGGGAAGCTAAAGGAAAAAAGACAGCGAAGGTGAGTTTTGGGGTTGATGTGAGGTCGAATAGGCTACCGGAAGGGCCTAATACTCTGATCAGCGATATTGATTCCGGGATGGTGAAGCTAAGCGGCTCTGGCACGGTGAGTGGTAGGTTTACATTGTGGAAGATTATAAAAAAGAGGATGACGGGCAAGATGGATTGCACGATGACGTTGGTTGTGAAGAGTAAGACCATCAAGGGTCTAGTATGCAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LIN52

Protein Analysis

194

Amino Acids

21.26

Weight (kDa)

9.55

Isoelectric Point (pI)

31.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 500
AccI GTMKAC 1 cut(s) 261
AciI CCGC 3 cut(s) 40, 227, 456
AfaI GTAC 2 cut(s) 123, 296
AfiI CCNNNNNNNGG 1 cut(s) 254
AjnI CCWGG 1 cut(s) 18
AluBI AGCT 2 cut(s) 341, 451
AluI AGCT 2 cut(s) 341, 451
Alw21I GWGCWC 1 cut(s) 281
AlwNI CAGNNNCTG 1 cut(s) 60
Ama87I CYCGRG 1 cut(s) 146
AoxI GGCC 2 cut(s) 197, 407
ApeKI GCWGC 1 cut(s) 224
AseI ATTAAT 1 cut(s) 164
AspS9I GGNCC 2 cut(s) 178, 407
AsuC2I CCSGG 1 cut(s) 439
AsuHPI GGTGA 6 cut(s) 183, 295, 340, 376, 457, 481
AvaI CYCGRG 1 cut(s) 146
AvaII GGWCC 1 cut(s) 178
Bbv12I GWGCWC 1 cut(s) 281
BbvI GCAGC 1 cut(s) 211
BccI CCATC 4 cut(s) 325, 436, 517, 569
BceAI ACGGC 1 cut(s) 89
BciT130I CCWGG 1 cut(s) 20
BclI TGATCA 1 cut(s) 420
BcnI CCSGG 1 cut(s) 439
BfaI CTAG 1 cut(s) 572
BisI GCNGC 2 cut(s) 225, 457
BlpI GCTNAGC 1 cut(s) 452
BlsI GCNGC 2 cut(s) 226, 458
BmcAI AGTACT 1 cut(s) 123
Bme1390I CCNGG 2 cut(s) 20, 439
Bme18I GGWCC 1 cut(s) 178
BmeT110I CYCGRG 1 cut(s) 146
BmgT120I GGNCC 2 cut(s) 178, 407
BmrFI CCNGG 2 cut(s) 20, 439
Bpu1102I GCTNAGC 1 cut(s) 452
BpuMI CCSGG 1 cut(s) 439
BsaJI CCNNGG 2 cut(s) 147, 194
BsaWI WCCGGW 1 cut(s) 400
BsaXI ACNNNNNCTCC 2 cut(s) 114, 144
Bsc4I CCNNNNNNNGG 1 cut(s) 254
BseBI CCWGG 1 cut(s) 20
BseDI CCNNGG 2 cut(s) 147, 194
BseGI GGATG 2 cut(s) 447, 516
BseLI CCNNNNNNNGG 1 cut(s) 254
BseMII CTCAG 1 cut(s) 149
BseXI GCAGC 1 cut(s) 211
BshFI GGCC 2 cut(s) 199, 409
BsiHKAI GWGCWC 1 cut(s) 281
BsiHKCI CYCGRG 1 cut(s) 146
BsiSI CCGG 2 cut(s) 401, 438
BslI CCNNNNNNNGG 1 cut(s) 254
BsnI GGCC 2 cut(s) 199, 409
BsoBI CYCGRG 1 cut(s) 146
Bsp1286I GDGCHC 1 cut(s) 281
Bsp143I GATC 2 cut(s) 90, 420
Bsp1720I GCTNAGC 1 cut(s) 452
BspACI CCGC 3 cut(s) 40, 227, 456
BspANI GGCC 2 cut(s) 199, 409
BspCNI CTCAG 1 cut(s) 150
BspHI TCATGA 1 cut(s) 87
BssECI CCNNGG 2 cut(s) 147, 194
BssMI GATC 2 cut(s) 90, 420
BssT1I CCWWGG 1 cut(s) 194
Bst2UI CCWGG 1 cut(s) 20
Bst4CI ACNGT 5 cut(s) 74, 238, 283, 299, 469
Bst6I CTCTTC 1 cut(s) 545
BstDEI CTNAG 2 cut(s) 158, 452
BstF5I GGATG 2 cut(s) 447, 516
BstKTI GATC 2 cut(s) 93, 423
BstMBI GATC 2 cut(s) 90, 420
BstMWI GCNNNNNNNGC 2 cut(s) 39, 462
BstNI CCWGG 1 cut(s) 20
BstSCI CCNGG 2 cut(s) 18, 437
BstV1I GCAGC 1 cut(s) 211
BsuRI GGCC 2 cut(s) 199, 409
BtsCI GGATG 2 cut(s) 447, 516
CaiI CAGNNNCTG 1 cut(s) 60
CciI TCATGA 1 cut(s) 87
Cfr13I GGNCC 2 cut(s) 178, 407
Csp6I GTAC 2 cut(s) 122, 295
CviAII CATG 1 cut(s) 88
CviJI RGCY 9 cut(s) 18, 199, 224, 274, 341, 397, 409, 451, 459
CviKI_1 RGCY 9 cut(s) 18, 199, 224, 274, 341, 397, 409, 451, 459
CviQI GTAC 2 cut(s) 122, 295
DdeI CTNAG 2 cut(s) 158, 452
DpnI GATC 2 cut(s) 92, 422
DpnII GATC 2 cut(s) 90, 420
Eam1104I CTCTTC 1 cut(s) 545
EarI CTCTTC 1 cut(s) 545
Eco130I CCWWGG 1 cut(s) 194
Eco47I GGWCC 1 cut(s) 178
Eco88I CYCGRG 1 cut(s) 146
EcoO109I RGGNCCY 2 cut(s) 178, 407
EcoRII CCWGG 1 cut(s) 18
EcoT14I CCWWGG 1 cut(s) 194
ErhI CCWWGG 1 cut(s) 194
FaeI CATG 1 cut(s) 91
FaiI YATR 5 cut(s) 89, 97, 135, 500, 577
FatI CATG 1 cut(s) 87
FbaI TGATCA 1 cut(s) 420
FblI GTMKAC 1 cut(s) 261
Fnu4HI GCNGC 2 cut(s) 225, 457
FokI GGATG 2 cut(s) 454, 523
Fsp4HI GCNGC 2 cut(s) 225, 457
FspBI CTAG 1 cut(s) 572
GluI GCNGC 2 cut(s) 225, 457
HaeIII GGCC 2 cut(s) 199, 409
HapII CCGG 2 cut(s) 401, 438
Hin1II CATG 1 cut(s) 91
HinfI GANTC 3 cut(s) 188, 309, 434
HpaII CCGG 2 cut(s) 401, 438
HphI GGTGA 6 cut(s) 183, 295, 340, 376, 457, 481
Hpy166II GTNNAC 2 cut(s) 262, 483
Hpy188I TCNGA 1 cut(s) 420
Hpy188III TCNNGA 3 cut(s) 88, 146, 313
Hpy8I GTNNAC 2 cut(s) 262, 483
HpyAV CCTTC 3 cut(s) 213, 355, 398
HpyCH4III ACNGT 5 cut(s) 74, 238, 283, 299, 469
HpyCH4IV ACGT 2 cut(s) 171, 539
HpyCH4V TGCA 2 cut(s) 531, 579
HpyF10VI GCNNNNNNNGC 2 cut(s) 39, 462
HpyF3I CTNAG 2 cut(s) 158, 452
HpySE526I ACGT 2 cut(s) 171, 539
Hsp92II CATG 1 cut(s) 91
Ksp22I TGATCA 1 cut(s) 420
Kzo9I GATC 2 cut(s) 90, 420
LpnPI CCDG 6 cut(s) 5, 32, 67, 414, 447, 451
Lsp1109I GCAGC 1 cut(s) 211
MaeI CTAG 1 cut(s) 572
MaeII ACGT 2 cut(s) 171, 539
MalI GATC 2 cut(s) 92, 422
MboI GATC 2 cut(s) 90, 420
MboII GAAGA 3 cut(s) 253, 505, 562
MhlI GDGCHC 1 cut(s) 281
MlyI GAGTC 2 cut(s) 182, 318
MnlI CCTC 7 cut(s) 47, 142, 153, 191, 210, 378, 501
MseI TTAA 2 cut(s) 164, 210
MspI CCGG 2 cut(s) 401, 438
MspR9I CCNGG 2 cut(s) 20, 439
MvaI CCWGG 1 cut(s) 20
MwoI GCNNNNNNNGC 2 cut(s) 39, 462
NciI CCSGG 1 cut(s) 439
NdeII GATC 2 cut(s) 90, 420
NlaIII CATG 1 cut(s) 91
NmeAIII GCCGAG 1 cut(s) 300
PagI TCATGA 1 cut(s) 87
PcsI WCGNNNNNNNCGW 1 cut(s) 261
PfeI GAWTC 1 cut(s) 434
PfoI TCCNGGA 1 cut(s) 437
PkrI GCNGC 2 cut(s) 226, 458
PleI GAGTC 2 cut(s) 182, 317
PpsI GAGTC 2 cut(s) 182, 317
PpuMI RGGWCCY 1 cut(s) 178
PshBI ATTAAT 1 cut(s) 164
PsiI TTATAA 1 cut(s) 500
Psp5II RGGWCCY 1 cut(s) 178
Psp6I CCWGG 1 cut(s) 18
PspGI CCWGG 1 cut(s) 18
PspPI GGNCC 2 cut(s) 178, 407
PspPPI RGGWCCY 1 cut(s) 178
PstNI CAGNNNCTG 1 cut(s) 60
RsaI GTAC 2 cut(s) 123, 296
RsaNI GTAC 2 cut(s) 122, 295
SaqAI TTAA 2 cut(s) 164, 210
SatI GCNGC 2 cut(s) 225, 457
Sau3AI GATC 2 cut(s) 90, 420
Sau96I GGNCC 2 cut(s) 178, 407
ScaI AGTACT 1 cut(s) 123
SchI GAGTC 2 cut(s) 182, 318
ScrFI CCNGG 2 cut(s) 20, 439
SduI GDGCHC 1 cut(s) 281
SinI GGWCC 1 cut(s) 178
SsiI CCGC 3 cut(s) 40, 227, 456
SspMI CTAG 1 cut(s) 572
StyD4I CCNGG 2 cut(s) 18, 437
StyI CCWWGG 1 cut(s) 194
TaaI ACNGT 5 cut(s) 74, 238, 283, 299, 469
TaiI ACGT 2 cut(s) 174, 542
TaqI TCGA 2 cut(s) 270, 389
TatI WGTACW 2 cut(s) 121, 294
TauI GCSGC 1 cut(s) 459
TfiI GAWTC 1 cut(s) 434
Tru1I TTAA 2 cut(s) 164, 210
Tru9I TTAA 2 cut(s) 164, 210
TseI GCWGC 1 cut(s) 224
TspDTI ATGAA 2 cut(s) 55, 76
VpaK11BI GGWCC 1 cut(s) 178
VspI ATTAAT 1 cut(s) 164
XmiI GTMKAC 1 cut(s) 261
XspI CTAG 1 cut(s) 572
ZrmI AGTACT 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.