Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0000902

Physical Location & Seq

Genomic Coordinates Forward (+)

17952976 .. 17956481

Gene Structure 3506 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G178200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGTTCAGCAAACCATAGATTCTAAATTTAGTGAATATGGGATGGGAGCTACCGAATCCGAATTGCCTGTTCATGATAAGCAACTGTCAGTTCCTGTAAAGAAGACTGCGTTAAGAGATCTGCAAAATGATATTAGAGTTGCAATGCCCAACTCTTTTGGGAACTCTCCTCTATTAAAGGATGGAGGACACATTAGTAATGCTCCTAGAGTTTCGGGCACCAAGAGACCTTTACCTGAACCTGAGTGCCCGATGAGCCTTCCTCAACACCAGCTCCCCAGTAGCAGTGCTGCAAATGGGCATCTTGTCTATGTTCGTAGAAAGTCGGAAGCAGATGTAGTCAGAAGTAGTACTTGTGATAATGCAAGCATTAATGCTGATTGTCAGGTATCAAGGACGCTTAGTCACCACGAGGCAAGCACCCGACCCAGTCACCACGAGACAAGCACCCGACCCAGTCACCAAGAGGCAAGCGCCCGACCCATATTCCAAACAAAGGAGTCAAAAGTTTATTGCATTCCGGCTTTTGCACCTTTTCCGATGTCAGCTTCAACCATCCAGCCTGGAAAACCTTCAGTTAGTGCCCCACATTGTAAGTCTGGTATAAGAATAGCACCATCAGGATCCAATCCCCTTGCTTCTGCTACCCAAACATTGGCTGGTTCAAAGGGACTCAGAAATCTGCACTGGGAAGCGCGATGTCATCAATTGCAGTTGCTATTAAGGAAATTGGACCAGTCAGAGCAAGAGGATTATCTCCACATGCTGCGGTCGCTCTCCTCAGTTGACCTGAGCAGACATGCAGTTGAGTTGGAAAAGAGATCAATTCAGCTTTCGCTGGAGGAAGCAAAAGAATTGCAGCGTGTTGGGTTTCTGAATGTTCTAGGGAAACCTGCGAAGCAATTCAAAGTACCGTCAACTCATCAAGACCGATCAGATAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIN52

Protein Analysis

315

Amino Acids

34.52

Weight (kDa)

9.22

Isoelectric Point (pI)

62.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000902)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38280
fragaria_vesca	FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_2g16620 FvH4_5g25250 FvH4_5g25250 FvH4_5g25250 FvH4_5g25250 FvH4_5g25250 FvH4_5g25250 FvH4_5g25250
malus_domestica	MD05G1134400.v1.1 MD06G1009100.v1.1 MD10G1139500.v1.1
prunus_persica	Prupe.5G011500_v2.0.a1 Prupe.8G178200_v2.0.a1 Prupe.8G178200_v2.0.a1 Prupe.8G178200_v2.0.a1 Prupe.8G178200_v2.0.a1 Prupe.8G178200_v2.0.a1 Prupe.8G178200_v2.0.a1
pyrus_communis	pycom05g13100 pycom06g00760 pycom10g11850
rosa_chinensis	RchiOBHm_Chr6g0280681 RchiOBHm_Chr7g0215391
rosa_laevigata	RLG00000002666 RLG00000013036
rosa_multiflora	Rmu_sc0000355.1_g000008 Rmu_sc0000976.1_g000009
rosa_roxburghii	Rroxscaffold_3G00244230 Rroxscaffold_7G00187760
rosa_rugosa	Rorug06G0133800 Rorug06G0133800 Rorug06G0133800 Rorug06G0133800 Rorug07G0152800 Rorug07G0152900 Rorug07G0153000 Rorug07G0153100
rosa_samantha	Rh6AG246400 Rh6BG248600 Rh6CG249900 Rh6DG241300 Rh7AG289600 Rh7BG281500 Rh7CG309200 Rh7DG293100
rosa_wichuraiana	Rw6G021320 Rw7G024740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	901
AccB1I	GGYRCC	1 cut(s)	218
AccB7I	CCANNNNNTGG	1 cut(s)	655
AccII	CGCG	1 cut(s)	697
AciI	CCGC	1 cut(s)	769
AclWI	GGATC	2 cut(s)	618, 631
AcsI	RAATTY	1 cut(s)	26
AcuI	CTGAAG	1 cut(s)	558
AfaI	GTAC	2 cut(s)	352, 912
AfiI	CCNNNNNNNGG	2 cut(s)	496, 655
AgsI	TTSAA	3 cut(s)	552, 666, 907
AhdI	GACNNNNNGTC	1 cut(s)	402
AjnI	CCWGG	1 cut(s)	562
AluBI	AGCT	4 cut(s)	50, 274, 548, 832
AluI	AGCT	4 cut(s)	50, 274, 548, 832
Alw26I	GTCTC	2 cut(s)	220, 434
AlwI	GGATC	2 cut(s)	618, 631
AlwNI	CAGNNNCTG	1 cut(s)	95
ApeKI	GCWGC	3 cut(s)	290, 766, 859
ApoI	RAATTY	1 cut(s)	26
AseI	ATTAAT	1 cut(s)	372
Asp700I	GAANNNNTTC	2 cut(s)	571, 902
AspLEI	GCGC	2 cut(s)	476, 697
AspS9I	GGNCC	1 cut(s)	733
AsuHPI	GGTGA	3 cut(s)	398, 425, 452
AvaII	GGWCC	1 cut(s)	733
BaeGI	GKGCMC	3 cut(s)	221, 251, 586
BamHI	GGATCC	1 cut(s)	623
BanI	GGYRCC	1 cut(s)	218
BauI	CACGAG	2 cut(s)	410, 437
BbsI	GAAGAC	1 cut(s)	110
BbvI	GCAGC	3 cut(s)	277, 753, 871
BccI	CCATC	4 cut(s)	37, 176, 563, 625
BciT130I	CCWGG	1 cut(s)	564
BcoDI	GTCTC	2 cut(s)	220, 434
BfaI	CTAG	2 cut(s)	207, 884
BfoI	RGCGCY	1 cut(s)	477
BfuAI	ACCTGC	1 cut(s)	901
BglII	AGATCT	1 cut(s)	118
BisI	GCNGC	3 cut(s)	291, 767, 860
BlsI	GCNGC	3 cut(s)	292, 768, 861
BmcAI	AGTACT	1 cut(s)	352
Bme1390I	CCNGG	1 cut(s)	564
Bme18I	GGWCC	1 cut(s)	733
BmeRI	GACNNNNNGTC	1 cut(s)	402
BmgT120I	GGNCC	1 cut(s)	733
BmiI	GGNNCC	2 cut(s)	220, 625
BmrFI	CCNGG	1 cut(s)	564
BmrI	ACTGGG	4 cut(s)	273, 423, 450, 697
BmsI	GCATC	1 cut(s)	310
BmuI	ACTGGG	4 cut(s)	273, 423, 450, 697
BpiI	GAAGAC	1 cut(s)	110
BplI	GAGNNNNNCTC	2 cut(s)	247, 279
BpmI	CTGGAG	1 cut(s)	860
Bpu10I	CCTNAGC	1 cut(s)	791
BsaI	GGTCTC	1 cut(s)	220
BsaXI	ACNNNNNCTCC	2 cut(s)	258, 288
Bsc4I	CCNNNNNNNGG	2 cut(s)	496, 655
Bse1I	ACTGG	5 cut(s)	279, 429, 456, 692, 736
Bse3DI	GCAATG	1 cut(s)	150
BseBI	CCWGG	1 cut(s)	564
BseGI	GGATG	3 cut(s)	48, 187, 555
BseLI	CCNNNNNNNGG	2 cut(s)	496, 655
BseMI	GCAATG	1 cut(s)	150
BseMII	CTCAG	4 cut(s)	234, 688, 782, 795
BseNI	ACTGG	5 cut(s)	279, 429, 456, 692, 736
BseRI	GAGGAG	2 cut(s)	159, 769
BseSI	GKGCMC	3 cut(s)	221, 251, 586
BseXI	GCAGC	3 cut(s)	277, 753, 871
BsgI	GTGCAG	1 cut(s)	668
Bsh1236I	CGCG	1 cut(s)	697
Bsh1285I	CGRYCG	1 cut(s)	773
BshNI	GGYRCC	1 cut(s)	218
BsiEI	CGRYCG	1 cut(s)	773
BsiSI	CCGG	1 cut(s)	521
BslFI	GGGAC	1 cut(s)	684
BslI	CCNNNNNNNGG	2 cut(s)	496, 655
BsmAI	GTCTC	2 cut(s)	220, 434
BsmFI	GGGAC	1 cut(s)	684
BsmI	GAATGC	1 cut(s)	516
Bso31I	GGTCTC	1 cut(s)	220
Bsp1286I	GDGCHC	3 cut(s)	221, 251, 586
Bsp143I	GATC	4 cut(s)	118, 623, 821, 932
BspACI	CCGC	1 cut(s)	769
BspCNI	CTCAG	4 cut(s)	235, 687, 783, 794
BspFNI	CGCG	1 cut(s)	697
BspHI	TCATGA	1 cut(s)	73
BspLI	GGNNCC	2 cut(s)	220, 625
BspMI	ACCTGC	1 cut(s)	901
BspPI	GGATC	2 cut(s)	618, 631
BspT107I	GGYRCC	1 cut(s)	218
BspTNI	GGTCTC	1 cut(s)	220
BsrDI	GCAATG	1 cut(s)	150
BsrI	ACTGG	5 cut(s)	279, 429, 456, 692, 736
BssMI	GATC	4 cut(s)	118, 623, 821, 932
BssSI	CACGAG	2 cut(s)	410, 437
Bst2BI	CACGAG	2 cut(s)	410, 437
Bst2UI	CCWGG	1 cut(s)	564
Bst4CI	ACNGT	2 cut(s)	87, 915
BstC8I	GCNNGC	3 cut(s)	367, 418, 472
BstDEI	CTNAG	5 cut(s)	243, 401, 674, 781, 791
BstF5I	GGATG	3 cut(s)	48, 187, 555
BstFNI	CGCG	1 cut(s)	697
BstH2I	RGCGCY	1 cut(s)	477
BstHHI	GCGC	2 cut(s)	476, 697
BstKTI	GATC	4 cut(s)	121, 626, 824, 935
BstMAI	GTCTC	2 cut(s)	220, 434
BstMBI	GATC	4 cut(s)	118, 623, 821, 932
BstMCI	CGRYCG	1 cut(s)	773
BstMWI	GCNNNNNNNGC	2 cut(s)	255, 772
BstNI	CCWGG	1 cut(s)	564
BstNSI	RCATGY	2 cut(s)	766, 803
BstSCI	CCNGG	1 cut(s)	562
BstSLI	GKGCMC	3 cut(s)	221, 251, 586
BstUI	CGCG	1 cut(s)	697
BstV1I	GCAGC	3 cut(s)	277, 753, 871
BstV2I	GAAGAC	1 cut(s)	110
BstX2I	RGATCY	2 cut(s)	118, 623
BstYI	RGATCY	2 cut(s)	118, 623
BtgZI	GCGATG	1 cut(s)	712
BtsCI	GGATG	3 cut(s)	48, 187, 555
BtsI	GCAGTG	1 cut(s)	292
BtsIMutI	CAGTG	2 cut(s)	292, 685
BveI	ACCTGC	1 cut(s)	901
Cac8I	GCNNGC	3 cut(s)	367, 418, 472
CaiI	CAGNNNCTG	1 cut(s)	95
CciI	TCATGA	1 cut(s)	73
CfoI	GCGC	2 cut(s)	476, 697
Cfr13I	GGNCC	1 cut(s)	733
CseI	GACGC	1 cut(s)	406
Csp6I	GTAC	2 cut(s)	351, 911
CviAII	CATG	3 cut(s)	74, 763, 800
CviJI	RGCY	8 cut(s)	50, 258, 274, 524, 548, 562, 659, 832
CviKI_1	RGCY	8 cut(s)	50, 258, 274, 524, 548, 562, 659, 832
CviQI	GTAC	2 cut(s)	351, 911
DdeI	CTNAG	5 cut(s)	243, 401, 674, 781, 791
DpnI	GATC	4 cut(s)	120, 625, 823, 934
DpnII	GATC	4 cut(s)	118, 623, 821, 932
DriI	GACNNNNNGTC	1 cut(s)	402
Eam1105I	GACNNNNNGTC	1 cut(s)	402
Eco31I	GGTCTC	1 cut(s)	220
Eco47I	GGWCC	1 cut(s)	733
Eco57I	CTGAAG	1 cut(s)	558
EcoRII	CCWGG	1 cut(s)	562
FaeI	CATG	3 cut(s)	77, 766, 803
FaiI	YATR	8 cut(s)	17, 39, 75, 312, 485, 605, 764, 801
FalI	AAGNNNNNCTT	2 cut(s)	337, 369
FaqI	GGGAC	1 cut(s)	684
FatI	CATG	3 cut(s)	73, 762, 799
Fnu4HI	GCNGC	3 cut(s)	291, 767, 860
FokI	GGATG	3 cut(s)	55, 194, 542
Fsp4HI	GCNGC	3 cut(s)	291, 767, 860
FspBI	CTAG	2 cut(s)	207, 884
GlaI	GCGC	2 cut(s)	475, 696
GluI	GCNGC	3 cut(s)	291, 767, 860
GsuI	CTGGAG	1 cut(s)	860
HaeII	RGCGCY	1 cut(s)	477
HapII	CCGG	1 cut(s)	521
HgaI	GACGC	1 cut(s)	406
HhaI	GCGC	2 cut(s)	476, 697
Hin1II	CATG	3 cut(s)	77, 766, 803
Hin6I	GCGC	2 cut(s)	474, 695
HinP1I	GCGC	2 cut(s)	474, 695
HincII	GTYRAC	2 cut(s)	787, 918
HindII	GTYRAC	2 cut(s)	787, 918
HinfI	GANTC	4 cut(s)	20, 56, 500, 672
HpaII	CCGG	1 cut(s)	521
HphI	GGTGA	3 cut(s)	398, 425, 452
Hpy166II	GTNNAC	2 cut(s)	787, 918
Hpy188I	TCNGA	8 cut(s)	61, 328, 344, 540, 677, 742, 876, 937
Hpy188III	TCNNGA	3 cut(s)	74, 621, 926
Hpy8I	GTNNAC	2 cut(s)	787, 918
HpyAV	CCTTC	2 cut(s)	269, 582
HpyCH4III	ACNGT	2 cut(s)	87, 915
HpyF10VI	GCNNNNNNNGC	2 cut(s)	255, 772
HpyF3I	CTNAG	5 cut(s)	243, 401, 674, 781, 791
Hsp92II	CATG	3 cut(s)	77, 766, 803
HspAI	GCGC	2 cut(s)	474, 695
Kzo9I	GATC	4 cut(s)	118, 623, 821, 932
LmnI	GCTCC	3 cut(s)	47, 208, 279
Lsp1109I	GCAGC	3 cut(s)	277, 753, 871
LweI	GCATC	1 cut(s)	310
MaeI	CTAG	2 cut(s)	207, 884
MaeIII	GTNAC	3 cut(s)	404, 431, 458
MalI	GATC	4 cut(s)	120, 625, 823, 934
MboI	GATC	4 cut(s)	118, 623, 821, 932
MboII	GAAGA	1 cut(s)	115
MfeI	CAATTG	1 cut(s)	707
MflI	RGATCY	2 cut(s)	118, 623
MhlI	GDGCHC	3 cut(s)	221, 251, 586
MluCI	AATT	7 cut(s)	26, 62, 707, 728, 825, 854, 902
MlyI	GAGTC	2 cut(s)	509, 666
MmeI	TCCRAC	2 cut(s)	306, 792
MnlI	CCTC	8 cut(s)	179, 180, 273, 406, 460, 742, 790, 835
MroXI	GAANNNNTTC	2 cut(s)	571, 902
MseI	TTAA	4 cut(s)	113, 176, 372, 722
MspI	CCGG	1 cut(s)	521
MspR9I	CCNGG	1 cut(s)	564
MunI	CAATTG	1 cut(s)	707
Mva1269I	GAATGC	1 cut(s)	516
MvaI	CCWGG	1 cut(s)	564
MvnI	CGCG	1 cut(s)	697
MwoI	GCNNNNNNNGC	2 cut(s)	255, 772
NdeII	GATC	4 cut(s)	118, 623, 821, 932
NlaIII	CATG	3 cut(s)	77, 766, 803
NlaIV	GGNNCC	2 cut(s)	220, 625
NmuCI	GTSAC	3 cut(s)	404, 431, 458
NspI	RCATGY	2 cut(s)	766, 803
PagI	TCATGA	1 cut(s)	73
PctI	GAATGC	1 cut(s)	516
PdmI	GAANNNNTTC	2 cut(s)	571, 902
PfeI	GAWTC	2 cut(s)	20, 56
PflFI	GACNNNGTC	2 cut(s)	429, 456
PflMI	CCANNNNNTGG	1 cut(s)	655
PkrI	GCNGC	3 cut(s)	292, 768, 861
PleI	GAGTC	2 cut(s)	508, 666
PpsI	GAGTC	2 cut(s)	508, 666
PshBI	ATTAAT	1 cut(s)	372
Psp6I	CCWGG	1 cut(s)	562
PspGI	CCWGG	1 cut(s)	562
PspN4I	GGNNCC	2 cut(s)	220, 625
PspPI	GGNCC	1 cut(s)	733
PstNI	CAGNNNCTG	1 cut(s)	95
PsuI	RGATCY	2 cut(s)	118, 623
PsyI	GACNNNGTC	2 cut(s)	429, 456
RsaI	GTAC	2 cut(s)	352, 912
RsaNI	GTAC	2 cut(s)	351, 911
SaqAI	TTAA	4 cut(s)	113, 176, 372, 722
SatI	GCNGC	3 cut(s)	291, 767, 860
Sau3AI	GATC	4 cut(s)	118, 623, 821, 932
Sau96I	GGNCC	1 cut(s)	733
ScaI	AGTACT	1 cut(s)	352
SchI	GAGTC	2 cut(s)	509, 666
ScrFI	CCNGG	1 cut(s)	564
SduI	GDGCHC	3 cut(s)	221, 251, 586
SfaNI	GCATC	1 cut(s)	310
SinI	GGWCC	1 cut(s)	733
Sse9I	AATT	7 cut(s)	26, 62, 707, 728, 825, 854, 902
SsiI	CCGC	1 cut(s)	769
SspMI	CTAG	2 cut(s)	207, 884
StyD4I	CCNGG	1 cut(s)	562
TaaI	ACNGT	2 cut(s)	87, 915
TaqII	GACCGA	1 cut(s)	945
TasI	AATT	7 cut(s)	26, 62, 707, 728, 825, 854, 902
TatI	WGTACW	1 cut(s)	350
TfiI	GAWTC	2 cut(s)	20, 56
Tru1I	TTAA	4 cut(s)	113, 176, 372, 722
Tru9I	TTAA	4 cut(s)	113, 176, 372, 722
TscAI	CASTG	2 cut(s)	292, 692
TseFI	GTSAC	3 cut(s)	404, 431, 458
TseI	GCWGC	3 cut(s)	290, 766, 859
Tsp45I	GTSAC	3 cut(s)	404, 431, 458
TspDTI	ATGAA	1 cut(s)	62
TspRI	CASTG	2 cut(s)	292, 692
Tth111I	GACNNNGTC	2 cut(s)	429, 456
Van91I	CCANNNNNTGG	1 cut(s)	655
VpaK11BI	GGWCC	1 cut(s)	733
VspI	ATTAAT	1 cut(s)	372
XapI	RAATTY	1 cut(s)	26
XceI	RCATGY	2 cut(s)	766, 803
XcmI	CCANNNNNNNNNTGG	1 cut(s)	656
XmnI	GAANNNNTTC	2 cut(s)	571, 902
XspI	CTAG	2 cut(s)	207, 884
ZrmI	AGTACT	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.