Rorug07G0152800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000902
Physical Location & Seq
Reverse (-)
12131616 .. 12132748
1133 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0152800.1

Sequence Viewer

Length: 633 bp
ATGGCAGATCAAGAAAGCCAGGTCTGGCCCTTGGCGCCGGGCAAGCTACACCAAAGAAGCGACGAAAATCCCACGTTCAAAGCCATACGCCGAGAGAGAAGCAACAAGTGCTTCGTCTACGTTTTCTCCGGCATCGTCCTCTTCAGCATCGCCATCTTGGTTTTCGCGCTGCTCGTTCTCCGAGTCAAGTTGCCGGAGATCAAACTGAGATCCGTCACCGTGAAGAATCTCAAGTACTCGTCTTGGCCGCCTTCGTTCAACACATCTTTGTCTGCACAAATGACAGTGAAGAATCCAAACTTCGGGGACTATGAGTTTGTGCCGACCACGGTGAGTTTCTTGTACGGAGGAAGCAAAGTTGGGAGCACGAAAGTGGTGAAGGGGCAAGCCAAAGGGAAGAAGACTGGGAGGGTGAGTTTTGGGGTTGATTTGAGGTCGAACAAGCTGCCGGAGGGGGCTAATAATCTGACGAGTGATATAAATTCCGGGATGTTGAAGCTGACCGGCACCGGCAAAGTGAGTGGTAAAGTGACTTTGTGGAAGATTATAAACAAGAGAAAGACGGGGAAGATGGATTGCACCATGACGCTTGTTTTGAAGAGTAAGACCATCAAGGATTTGGTGTGCAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LIN52

Protein Analysis

210

Amino Acids

23.24

Weight (kDa)

10.21

Isoelectric Point (pI)

28.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 94 - 174 7.9e-06 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 548
AccB1I GGYRCC 2 cut(s) 34, 506
AccI GTMKAC 1 cut(s) 117
AccII CGCG 1 cut(s) 167
AciI CCGC 1 cut(s) 248
AclWI GGATC 1 cut(s) 204
AcoI YGGCCR 1 cut(s) 245
AcsI RAATTY 1 cut(s) 481
AcuI CTGAAG 1 cut(s) 127
AcyI GRCGYC 1 cut(s) 35
AfaI GTAC 2 cut(s) 236, 344
AfiI CCNNNNNNNGG 1 cut(s) 302
AgsI TTSAA 4 cut(s) 79, 259, 496, 598
AjnI CCWGG 1 cut(s) 18
AleI CACNNNNGTG 1 cut(s) 371
AluBI AGCT 3 cut(s) 46, 445, 499
AluI AGCT 3 cut(s) 46, 445, 499
Alw21I GWGCWC 1 cut(s) 368
AlwI GGATC 1 cut(s) 204
AoxI GGCC 2 cut(s) 26, 245
ApeKI GCWGC 2 cut(s) 169, 445
ApoI RAATTY 1 cut(s) 481
ArsI GACNNNNNNTTYG 4 cut(s) 299, 331, 577, 609
AspLEI GCGC 2 cut(s) 37, 169
AspS9I GGNCC 1 cut(s) 27
AsuC2I CCSGG 2 cut(s) 39, 487
AsuHPI GGTGA 4 cut(s) 208, 343, 388, 424
BanI GGYRCC 2 cut(s) 34, 506
BbsI GAAGAC 1 cut(s) 407
Bbv12I GWGCWC 1 cut(s) 368
BbvI GCAGC 2 cut(s) 156, 432
BccI CCATC 3 cut(s) 161, 565, 617
BcgI CGANNNNNNTGC 2 cut(s) 427, 461
BciT130I CCWGG 1 cut(s) 20
BcnI CCSGG 2 cut(s) 39, 487
BfoI RGCGCY 1 cut(s) 38
BisI GCNGC 3 cut(s) 170, 248, 446
BlsI GCNGC 3 cut(s) 171, 249, 447
BmcAI AGTACT 1 cut(s) 236
Bme1390I CCNGG 3 cut(s) 20, 39, 487
BmgT120I GGNCC 1 cut(s) 27
BmiI GGNNCC 2 cut(s) 36, 508
BmrFI CCNGG 3 cut(s) 20, 39, 487
BmrI ACTGGG 1 cut(s) 414
BmsI GCATC 2 cut(s) 141, 156
BmuI ACTGGG 1 cut(s) 414
BpiI GAAGAC 1 cut(s) 407
BpuEI CTTGAG 1 cut(s) 215
BpuMI CCSGG 2 cut(s) 39, 487
BsaHI GRCGYC 1 cut(s) 35
BsaJI CCNNGG 2 cut(s) 30, 327
BsaXI ACNNNNNCTCC 4 cut(s) 110, 140, 400, 430
Bsc4I CCNNNNNNNGG 1 cut(s) 302
Bse118I RCCGGY 2 cut(s) 503, 509
Bse1I ACTGG 1 cut(s) 409
BseBI CCWGG 1 cut(s) 20
BseDI CCNNGG 2 cut(s) 30, 327
BseGI GGATG 1 cut(s) 495
BseLI CCNNNNNNNGG 1 cut(s) 302
BseMII CTCAG 1 cut(s) 197
BseNI ACTGG 1 cut(s) 409
BseXI GCAGC 2 cut(s) 156, 432
BsgI GTGCAG 1 cut(s) 258
Bsh1236I CGCG 1 cut(s) 167
BshFI GGCC 2 cut(s) 28, 247
BshNI GGYRCC 2 cut(s) 34, 506
BsiHKAI GWGCWC 1 cut(s) 368
BsiSI CCGG 7 cut(s) 38, 129, 194, 449, 486, 504, 510
BslFI GGGAC 1 cut(s) 320
BslI CCNNNNNNNGG 1 cut(s) 302
BsmFI GGGAC 1 cut(s) 320
BsnI GGCC 2 cut(s) 28, 247
Bsp1286I GDGCHC 1 cut(s) 368
Bsp143I GATC 3 cut(s) 7, 198, 209
BspACI CCGC 1 cut(s) 248
BspANI GGCC 2 cut(s) 28, 247
BspCNI CTCAG 1 cut(s) 198
BspFNI CGCG 1 cut(s) 167
BspLI GGNNCC 2 cut(s) 36, 508
BspPI GGATC 1 cut(s) 204
BspT107I GGYRCC 2 cut(s) 34, 506
BsrFI RCCGGY 2 cut(s) 503, 509
BsrI ACTGG 1 cut(s) 409
BssAI RCCGGY 2 cut(s) 503, 509
BssECI CCNNGG 2 cut(s) 30, 327
BssMI GATC 3 cut(s) 7, 198, 209
BssNI GRCGYC 1 cut(s) 35
BssT1I CCWWGG 1 cut(s) 30
Bst2UI CCWGG 1 cut(s) 20
Bst4CI ACNGT 3 cut(s) 220, 286, 331
Bst6I CTCTTC 2 cut(s) 146, 593
BstACI GRCGYC 1 cut(s) 35
BstAPI GCANNNNNTGC 1 cut(s) 108
BstC8I GCNNGC 2 cut(s) 44, 387
BstDEI CTNAG 1 cut(s) 206
BstDSI CCRYGG 1 cut(s) 327
BstF5I GGATG 1 cut(s) 495
BstFNI CGCG 1 cut(s) 167
BstH2I RGCGCY 1 cut(s) 38
BstHHI GCGC 2 cut(s) 37, 169
BstKTI GATC 3 cut(s) 10, 201, 212
BstMBI GATC 3 cut(s) 7, 198, 209
BstMWI GCNNNNNNNGC 3 cut(s) 34, 43, 108
BstNI CCWGG 1 cut(s) 20
BstSCI CCNGG 3 cut(s) 18, 37, 485
BstUI CGCG 1 cut(s) 167
BstV1I GCAGC 2 cut(s) 156, 432
BstV2I GAAGAC 1 cut(s) 407
BstX2I RGATCY 1 cut(s) 209
BstYI RGATCY 1 cut(s) 209
BsuRI GGCC 2 cut(s) 28, 247
BtgI CCRYGG 1 cut(s) 327
BtgZI GCGATG 1 cut(s) 133
BtsCI GGATG 1 cut(s) 495
BtsIMutI CAGTG 1 cut(s) 291
Cac8I GCNNGC 2 cut(s) 44, 387
CfoI GCGC 2 cut(s) 37, 169
Cfr10I RCCGGY 2 cut(s) 503, 509
Cfr13I GGNCC 1 cut(s) 27
CseI GACGC 1 cut(s) 595
Csp6I GTAC 2 cut(s) 235, 343
CspCI CAANNNNNGTGG 2 cut(s) 502, 537
CviAII CATG 1 cut(s) 583
CviJI RGCY 9 cut(s) 18, 28, 46, 83, 247, 389, 445, 458, 499
CviKI_1 RGCY 9 cut(s) 18, 28, 46, 83, 247, 389, 445, 458, 499
CviQI GTAC 2 cut(s) 235, 343
DdeI CTNAG 1 cut(s) 206
DinI GGCGCC 1 cut(s) 36
DpnI GATC 3 cut(s) 9, 200, 211
DpnII GATC 3 cut(s) 7, 198, 209
EaeI YGGCCR 1 cut(s) 245
Eam1104I CTCTTC 2 cut(s) 146, 593
EarI CTCTTC 2 cut(s) 146, 593
Eco130I CCWWGG 1 cut(s) 30
Eco57I CTGAAG 1 cut(s) 127
EcoRII CCWGG 1 cut(s) 18
EcoT14I CCWWGG 1 cut(s) 30
EgeI GGCGCC 1 cut(s) 36
EheI GGCGCC 1 cut(s) 36
ErhI CCWWGG 1 cut(s) 30
FaeI CATG 1 cut(s) 586
FaiI YATR 5 cut(s) 86, 312, 479, 548, 584
FaqI GGGAC 1 cut(s) 320
FatI CATG 1 cut(s) 582
FblI GTMKAC 1 cut(s) 117
Fnu4HI GCNGC 3 cut(s) 170, 248, 446
FokI GGATG 1 cut(s) 502
Fsp4HI GCNGC 3 cut(s) 170, 248, 446
GlaI GCGC 2 cut(s) 36, 168
GluI GCNGC 3 cut(s) 170, 248, 446
HaeII RGCGCY 1 cut(s) 38
HaeIII GGCC 2 cut(s) 28, 247
HapII CCGG 7 cut(s) 38, 129, 194, 449, 486, 504, 510
HgaI GACGC 1 cut(s) 595
HhaI GCGC 2 cut(s) 37, 169
Hin1I GRCGYC 1 cut(s) 35
Hin1II CATG 1 cut(s) 586
Hin6I GCGC 2 cut(s) 35, 167
HinP1I GCGC 2 cut(s) 35, 167
HinfI GANTC 3 cut(s) 183, 226, 292
HpaII CCGG 7 cut(s) 38, 129, 194, 449, 486, 504, 510
HphI GGTGA 4 cut(s) 208, 343, 388, 424
Hpy166II GTNNAC 1 cut(s) 118
Hpy188I TCNGA 2 cut(s) 182, 468
Hpy188III TCNNGA 1 cut(s) 11
Hpy8I GTNNAC 1 cut(s) 118
Hpy99I CGWCG 1 cut(s) 65
HpyAV CCTTC 2 cut(s) 261, 373
HpyCH4III ACNGT 3 cut(s) 220, 286, 331
HpyCH4IV ACGT 2 cut(s) 74, 120
HpyCH4V TGCA 3 cut(s) 275, 579, 627
HpyF10VI GCNNNNNNNGC 3 cut(s) 34, 43, 108
HpyF3I CTNAG 1 cut(s) 206
HpySE526I ACGT 2 cut(s) 74, 120
Hsp92I GRCGYC 1 cut(s) 35
Hsp92II CATG 1 cut(s) 586
HspAI GCGC 2 cut(s) 35, 167
KasI GGCGCC 1 cut(s) 34
Kzo9I GATC 3 cut(s) 7, 198, 209
LmnI GCTCC 1 cut(s) 363
Lsp1109I GCAGC 2 cut(s) 156, 432
LweI GCATC 2 cut(s) 141, 156
MaeII ACGT 2 cut(s) 74, 120
MaeIII GTNAC 2 cut(s) 214, 529
MalI GATC 3 cut(s) 9, 200, 211
MboI GATC 3 cut(s) 7, 198, 209
MboII GAAGA 8 cut(s) 133, 235, 301, 409, 412, 553, 580, 610
MflI RGATCY 1 cut(s) 209
MhlI GDGCHC 1 cut(s) 368
MluCI AATT 1 cut(s) 481
Mly113I GGCGCC 1 cut(s) 35
MlyI GAGTC 1 cut(s) 192
MnlI CCTC 5 cut(s) 149, 341, 402, 426, 445
MslI CAYNNNNRTG 1 cut(s) 371
MspI CCGG 7 cut(s) 38, 129, 194, 449, 486, 504, 510
MspR9I CCNGG 3 cut(s) 20, 39, 487
MvaI CCWGG 1 cut(s) 20
MvnI CGCG 1 cut(s) 167
MwoI GCNNNNNNNGC 3 cut(s) 34, 43, 108
NarI GGCGCC 1 cut(s) 35
NciI CCSGG 2 cut(s) 39, 487
NdeII GATC 3 cut(s) 7, 198, 209
NlaIII CATG 1 cut(s) 586
NlaIV GGNNCC 2 cut(s) 36, 508
NmeAIII GCCGAG 1 cut(s) 116
NmuCI GTSAC 2 cut(s) 214, 529
OliI CACNNNNGTG 1 cut(s) 371
PcsI WCGNNNNNNNCGW 1 cut(s) 171
PfeI GAWTC 2 cut(s) 226, 292
PfoI TCCNGGA 1 cut(s) 485
PkrI GCNGC 3 cut(s) 171, 249, 447
PleI GAGTC 1 cut(s) 191
PluTI GGCGCC 1 cut(s) 38
PpsI GAGTC 1 cut(s) 191
PsiI TTATAA 1 cut(s) 548
Psp6I CCWGG 1 cut(s) 18
PspGI CCWGG 1 cut(s) 18
PspN4I GGNNCC 2 cut(s) 36, 508
PspPI GGNCC 1 cut(s) 27
PsuI RGATCY 1 cut(s) 209
RsaI GTAC 2 cut(s) 236, 344
RsaNI GTAC 2 cut(s) 235, 343
RseI CAYNNNNRTG 1 cut(s) 371
SatI GCNGC 3 cut(s) 170, 248, 446
Sau3AI GATC 3 cut(s) 7, 198, 209
Sau96I GGNCC 1 cut(s) 27
ScaI AGTACT 1 cut(s) 236
SchI GAGTC 1 cut(s) 192
ScrFI CCNGG 3 cut(s) 20, 39, 487
SduI GDGCHC 1 cut(s) 368
SetI ASST 7 cut(s) 24, 48, 77, 123, 437, 447, 501
SfaNI GCATC 2 cut(s) 141, 156
SfoI GGCGCC 1 cut(s) 36
SmiMI CAYNNNNRTG 1 cut(s) 371
SmlI CTYRAG 1 cut(s) 230
SmoI CTYRAG 1 cut(s) 230
Sse9I AATT 1 cut(s) 481
SsiI CCGC 1 cut(s) 248
SspDI GGCGCC 1 cut(s) 34
StyD4I CCNGG 3 cut(s) 18, 37, 485
StyI CCWWGG 1 cut(s) 30
TaaI ACNGT 3 cut(s) 220, 286, 331
TaiI ACGT 2 cut(s) 77, 123
TaqI TCGA 1 cut(s) 437
TasI AATT 1 cut(s) 481
TatI WGTACW 1 cut(s) 234
TauI GCSGC 1 cut(s) 250
TfiI GAWTC 2 cut(s) 226, 292
TscAI CASTG 1 cut(s) 291
TseFI GTSAC 2 cut(s) 214, 529
TseI GCWGC 2 cut(s) 169, 445
Tsp45I GTSAC 2 cut(s) 214, 529
TspGWI ACGGA 2 cut(s) 202, 360
TspRI CASTG 1 cut(s) 291
XapI RAATTY 1 cut(s) 481
XcmI CCANNNNNNNNNTGG 1 cut(s) 616
XmiI GTMKAC 1 cut(s) 117
ZrmI AGTACT 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.