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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 221, 860 |
| AccIII | TCCGGA | 2 cut(s) | 259, 1307 |
| AciI | CCGC | 1 cut(s) | 1751 |
| AclI | AACGTT | 3 cut(s) | 477, 588, 699 |
| AclWI | GGATC | 3 cut(s) | 247, 1560, 1573 |
| AcsI | RAATTY | 1 cut(s) | 141 |
| AfaI | GTAC | 3 cut(s) | 283, 349, 1089 |
| AgsI | TTSAA | 8 cut(s) | 181, 502, 613, 1614, 1736, 1807, 1825, 1874 |
| AjnI | CCWGG | 1 cut(s) | 1504 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 30, 62 |
| AluBI | AGCT | 6 cut(s) | 168, 329, 1490, 1657, 1780, 1868 |
| AluI | AGCT | 6 cut(s) | 168, 329, 1490, 1657, 1780, 1868 |
| Alw21I | GWGCWC | 2 cut(s) | 170, 1558 |
| Alw26I | GTCTC | 1 cut(s) | 626 |
| AlwI | GGATC | 3 cut(s) | 247, 1560, 1573 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 98, 329, 974, 1196 |
| Aor13HI | TCCGGA | 2 cut(s) | 259, 1307 |
| AoxI | GGCC | 1 cut(s) | 60 |
| ApeKI | GCWGC | 6 cut(s) | 750, 1083, 1416, 1490, 1493, 1657 |
| ApoI | RAATTY | 1 cut(s) | 141 |
| AseI | ATTAAT | 5 cut(s) | 369, 813, 1035, 1146, 1257 |
| AspS9I | GGNCC | 5 cut(s) | 422, 977, 1199, 1310, 1681 |
| AsuC2I | CCSGG | 1 cut(s) | 153 |
| AsuHPI | GGTGA | 1 cut(s) | 503 |
| AvaII | GGWCC | 5 cut(s) | 422, 977, 1199, 1310, 1681 |
| BaeGI | GKGCMC | 2 cut(s) | 153, 1863 |
| BamHI | GGATCC | 1 cut(s) | 1565 |
| BanI | GGYRCC | 2 cut(s) | 221, 860 |
| BanII | GRGCYC | 1 cut(s) | 170 |
| BbsI | GAAGAC | 1 cut(s) | 113 |
| Bbv12I | GWGCWC | 2 cut(s) | 170, 1558 |
| BbvCI | CCTCAGC | 2 cut(s) | 57, 1864 |
| BbvI | GCAGC | 6 cut(s) | 762, 1095, 1428, 1477, 1505, 1644 |
| BccI | CCATC | 5 cut(s) | 371, 482, 704, 1505, 1522 |
| BciT130I | CCWGG | 1 cut(s) | 1506 |
| BciVI | GTATCC | 1 cut(s) | 1327 |
| BcnI | CCSGG | 1 cut(s) | 153 |
| BcoDI | GTCTC | 1 cut(s) | 626 |
| BfaI | CTAG | 2 cut(s) | 72, 210 |
| BfmI | CTRYAG | 2 cut(s) | 1491, 1658 |
| BfuI | GTATCC | 1 cut(s) | 1327 |
| BglII | AGATCT | 1 cut(s) | 1880 |
| BisI | GCNGC | 6 cut(s) | 751, 1084, 1417, 1491, 1494, 1658 |
| BlsI | GCNGC | 6 cut(s) | 752, 1085, 1418, 1492, 1495, 1659 |
| BmcAI | AGTACT | 2 cut(s) | 283, 349 |
| Bme1390I | CCNGG | 2 cut(s) | 153, 1506 |
| Bme18I | GGWCC | 5 cut(s) | 422, 977, 1199, 1310, 1681 |
| BmgT120I | GGNCC | 5 cut(s) | 422, 977, 1199, 1310, 1681 |
| BmrFI | CCNGG | 2 cut(s) | 153, 1506 |
| BmrI | ACTGGG | 1 cut(s) | 270 |
| BmsI | GCATC | 4 cut(s) | 307, 395, 728, 1701 |
| BmuI | ACTGGG | 1 cut(s) | 270 |
| BpiI | GAAGAC | 1 cut(s) | 113 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 157, 189, 1289, 1321 |
| BpmI | CTGGAG | 1 cut(s) | 1808 |
| Bpu10I | CCTNAGC | 2 cut(s) | 57, 1864 |
| BpuEI | CTTGAG | 1 cut(s) | 1691 |
| BpuMI | CCSGG | 1 cut(s) | 153 |
| BsaJI | CCNNGG | 2 cut(s) | 1481, 1728 |
| BsaWI | WCCGGW | 4 cut(s) | 259, 419, 863, 1307 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1545, 1575 |
| Bse1I | ACTGG | 6 cut(s) | 146, 276, 979, 1201, 1559, 1791 |
| Bse3DI | GCAATG | 1 cut(s) | 1075 |
| BseAI | TCCGGA | 2 cut(s) | 259, 1307 |
| BseBI | CCWGG | 1 cut(s) | 1506 |
| BseDI | CCNNGG | 2 cut(s) | 1481, 1728 |
| BseGI | GGATG | 1 cut(s) | 1497 |
| BseMI | GCAATG | 1 cut(s) | 1075 |
| BseMII | CTCAG | 4 cut(s) | 48, 231, 1875, 1878 |
| BseNI | ACTGG | 6 cut(s) | 146, 276, 979, 1201, 1559, 1791 |
| BseRI | GAGGAG | 2 cut(s) | 1566, 1717 |
| BseSI | GKGCMC | 2 cut(s) | 153, 1863 |
| BseXI | GCAGC | 6 cut(s) | 762, 1095, 1428, 1477, 1505, 1644 |
| BseYI | CCCAGC | 1 cut(s) | 161 |
| Bsh1285I | CGRYCG | 1 cut(s) | 758 |
| BshFI | GGCC | 1 cut(s) | 62 |
| BshNI | GGYRCC | 2 cut(s) | 221, 860 |
| BsiEI | CGRYCG | 1 cut(s) | 758 |
| BsiHKAI | GWGCWC | 2 cut(s) | 170, 1558 |
| BsiSI | CCGG | 6 cut(s) | 153, 260, 420, 864, 1308, 1463 |
| BslFI | GGGAC | 1 cut(s) | 1632 |
| BsmAI | GTCTC | 1 cut(s) | 626 |
| BsmFI | GGGAC | 1 cut(s) | 1632 |
| BsnI | GGCC | 1 cut(s) | 62 |
| Bsp1286I | GDGCHC | 4 cut(s) | 153, 170, 1558, 1863 |
| Bsp13I | TCCGGA | 2 cut(s) | 259, 1307 |
| Bsp143I | GATC | 3 cut(s) | 252, 1565, 1880 |
| BspACI | CCGC | 1 cut(s) | 1751 |
| BspANI | GGCC | 1 cut(s) | 62 |
| BspCNI | CTCAG | 4 cut(s) | 49, 232, 1876, 1877 |
| BspEI | TCCGGA | 2 cut(s) | 259, 1307 |
| BspHI | TCATGA | 1 cut(s) | 76 |
| BspMAI | CTGCAG | 2 cut(s) | 1495, 1662 |
| BspPI | GGATC | 3 cut(s) | 247, 1560, 1573 |
| BspQI | GCTCTTC | 2 cut(s) | 175, 1875 |
| BspT107I | GGYRCC | 2 cut(s) | 221, 860 |
| BsrDI | GCAATG | 1 cut(s) | 1075 |
| BsrI | ACTGG | 6 cut(s) | 146, 276, 979, 1201, 1559, 1791 |
| BssECI | CCNNGG | 2 cut(s) | 1481, 1728 |
| BssMI | GATC | 3 cut(s) | 252, 1565, 1880 |
| BssT1I | CCWWGG | 1 cut(s) | 1481 |
| Bst2UI | CCWGG | 1 cut(s) | 1506 |
| Bst6I | CTCTTC | 4 cut(s) | 175, 1068, 1635, 1875 |
| BstDEI | CTNAG | 9 cut(s) | 57, 240, 398, 731, 1064, 1437, 1739, 1864, 1884 |
| BstF5I | GGATG | 1 cut(s) | 1497 |
| BstKTI | GATC | 3 cut(s) | 255, 1568, 1883 |
| BstMAI | GTCTC | 1 cut(s) | 626 |
| BstMBI | GATC | 3 cut(s) | 252, 1565, 1880 |
| BstMCI | CGRYCG | 1 cut(s) | 758 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1663 |
| BstNI | CCWGG | 1 cut(s) | 1506 |
| BstNSI | RCATGY | 1 cut(s) | 1751 |
| BstSCI | CCNGG | 2 cut(s) | 151, 1504 |
| BstSFI | CTRYAG | 2 cut(s) | 1491, 1658 |
| BstSLI | GKGCMC | 2 cut(s) | 153, 1863 |
| BstV1I | GCAGC | 6 cut(s) | 762, 1095, 1428, 1477, 1505, 1644 |
| BstV2I | GAAGAC | 1 cut(s) | 113 |
| BstX2I | RGATCY | 2 cut(s) | 1565, 1880 |
| BstYI | RGATCY | 2 cut(s) | 1565, 1880 |
| BsuI | GTATCC | 1 cut(s) | 1327 |
| BsuRI | GGCC | 1 cut(s) | 62 |
| BtsCI | GGATG | 1 cut(s) | 1497 |
| BtsIMutI | CAGTG | 8 cut(s) | 153, 574, 685, 796, 907, 972, 1194, 1784 |
| CaiI | CAGNNNCTG | 4 cut(s) | 98, 329, 974, 1196 |
| CciI | TCATGA | 1 cut(s) | 76 |
| Cfr13I | GGNCC | 5 cut(s) | 422, 977, 1199, 1310, 1681 |
| CpoI | CGGWCCG | 1 cut(s) | 422 |
| CseI | GACGC | 1 cut(s) | 341 |
| Csp6I | GTAC | 3 cut(s) | 282, 348, 1088 |
| CspI | CGGWCCG | 1 cut(s) | 422 |
| CviAII | CATG | 3 cut(s) | 77, 1694, 1748 |
| CviQI | GTAC | 3 cut(s) | 282, 348, 1088 |
| DdeI | CTNAG | 9 cut(s) | 57, 240, 398, 731, 1064, 1437, 1739, 1864, 1884 |
| DpnI | GATC | 3 cut(s) | 254, 1567, 1882 |
| DpnII | GATC | 3 cut(s) | 252, 1565, 1880 |
| DraI | TTTAAA | 1 cut(s) | 1855 |
| Eam1104I | CTCTTC | 4 cut(s) | 175, 1068, 1635, 1875 |
| EarI | CTCTTC | 4 cut(s) | 175, 1068, 1635, 1875 |
| Ecl136II | GAGCTC | 1 cut(s) | 168 |
| Eco130I | CCWWGG | 1 cut(s) | 1481 |
| Eco24I | GRGCYC | 1 cut(s) | 170 |
| Eco32I | GATATC | 5 cut(s) | 429, 651, 762, 873, 1095 |
| Eco47I | GGWCC | 5 cut(s) | 422, 977, 1199, 1310, 1681 |
| Eco53kI | GAGCTC | 1 cut(s) | 168 |
| EcoICRI | GAGCTC | 1 cut(s) | 168 |
| EcoRI | GAATTC | 1 cut(s) | 141 |
| EcoRII | CCWGG | 1 cut(s) | 1504 |
| EcoRV | GATATC | 5 cut(s) | 429, 651, 762, 873, 1095 |
| EcoT14I | CCWWGG | 1 cut(s) | 1481 |
| EcoT38I | GRGCYC | 1 cut(s) | 170 |
| ErhI | CCWWGG | 1 cut(s) | 1481 |
| FaeI | CATG | 3 cut(s) | 80, 1697, 1751 |
| FaqI | GGGAC | 1 cut(s) | 1632 |
| FatI | CATG | 3 cut(s) | 76, 1693, 1747 |
| Fnu4HI | GCNGC | 6 cut(s) | 751, 1084, 1417, 1491, 1494, 1658 |
| FokI | GGATG | 1 cut(s) | 1484 |
| FriOI | GRGCYC | 1 cut(s) | 170 |
| Fsp4HI | GCNGC | 6 cut(s) | 751, 1084, 1417, 1491, 1494, 1658 |
| FspBI | CTAG | 2 cut(s) | 72, 210 |
| GluI | GCNGC | 6 cut(s) | 751, 1084, 1417, 1491, 1494, 1658 |
| GsaI | CCCAGC | 1 cut(s) | 165 |
| GsuI | CTGGAG | 1 cut(s) | 1808 |
| HaeIII | GGCC | 1 cut(s) | 62 |
| HapII | CCGG | 6 cut(s) | 153, 260, 420, 864, 1308, 1463 |
| HgaI | GACGC | 1 cut(s) | 341 |
| Hin1II | CATG | 3 cut(s) | 80, 1697, 1751 |
| HincII | GTYRAC | 1 cut(s) | 1288 |
| HindII | GTYRAC | 1 cut(s) | 1288 |
| HinfI | GANTC | 1 cut(s) | 23 |
| HpaI | GTTAAC | 1 cut(s) | 1288 |
| HpaII | CCGG | 6 cut(s) | 153, 260, 420, 864, 1308, 1463 |
| HphI | GGTGA | 1 cut(s) | 503 |
| Hpy166II | GTNNAC | 6 cut(s) | 565, 676, 787, 898, 1125, 1288 |
| Hpy188I | TCNGA | 6 cut(s) | 241, 325, 341, 1543, 1690, 1885 |
| Hpy188III | TCNNGA | 5 cut(s) | 77, 260, 1308, 1708, 1874 |
| Hpy8I | GTNNAC | 6 cut(s) | 565, 676, 787, 898, 1125, 1288 |
| HpyAV | CCTTC | 2 cut(s) | 175, 1608 |
| HpyCH4IV | ACGT | 3 cut(s) | 477, 588, 699 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1663 |
| HpyF3I | CTNAG | 9 cut(s) | 57, 240, 398, 731, 1064, 1437, 1739, 1864, 1884 |
| HpySE526I | ACGT | 3 cut(s) | 477, 588, 699 |
| Hsp92II | CATG | 3 cut(s) | 80, 1697, 1751 |
| Kpn2I | TCCGGA | 2 cut(s) | 259, 1307 |
| KspAI | GTTAAC | 1 cut(s) | 1288 |
| Kzo9I | GATC | 3 cut(s) | 252, 1565, 1880 |
| LguI | GCTCTTC | 2 cut(s) | 175, 1875 |
| Lsp1109I | GCAGC | 6 cut(s) | 762, 1095, 1428, 1477, 1505, 1644 |
| LweI | GCATC | 4 cut(s) | 307, 395, 728, 1701 |
| MaeI | CTAG | 2 cut(s) | 72, 210 |
| MaeII | ACGT | 3 cut(s) | 477, 588, 699 |
| MaeIII | GTNAC | 1 cut(s) | 1719 |
| MalI | GATC | 3 cut(s) | 254, 1567, 1882 |
| MboI | GATC | 3 cut(s) | 252, 1565, 1880 |
| MboII | GAAGA | 7 cut(s) | 118, 162, 514, 625, 1085, 1652, 1862 |
| MflI | RGATCY | 2 cut(s) | 1565, 1880 |
| MhlI | GDGCHC | 4 cut(s) | 153, 170, 1558, 1863 |
| MluCI | AATT | 8 cut(s) | 141, 202, 507, 618, 951, 1254, 1676, 1773 |
| MmeI | TCCRAC | 1 cut(s) | 1740 |
| MroI | TCCGGA | 2 cut(s) | 259, 1307 |
| MspA1I | CMGCKG | 1 cut(s) | 1657 |
| MspI | CCGG | 6 cut(s) | 153, 260, 420, 864, 1308, 1463 |
| MspR9I | CCNGG | 2 cut(s) | 153, 1506 |
| MvaI | CCWGG | 1 cut(s) | 1506 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1663 |
| NciI | CCSGG | 1 cut(s) | 153 |
| NdeII | GATC | 3 cut(s) | 252, 1565, 1880 |
| NlaIII | CATG | 3 cut(s) | 80, 1697, 1751 |
| NmeAIII | GCCGAG | 1 cut(s) | 88 |
| NmuCI | GTSAC | 1 cut(s) | 1719 |
| NspI | RCATGY | 1 cut(s) | 1751 |
| PagI | TCATGA | 1 cut(s) | 76 |
| PciSI | GCTCTTC | 2 cut(s) | 175, 1875 |
| PfeI | GAWTC | 1 cut(s) | 23 |
| PflFI | GACNNNGTC | 1 cut(s) | 335 |
| PfoI | TCCNGGA | 1 cut(s) | 1504 |
| PkrI | GCNGC | 6 cut(s) | 752, 1085, 1418, 1492, 1495, 1659 |
| PshBI | ATTAAT | 5 cut(s) | 369, 813, 1035, 1146, 1257 |
| Psp124BI | GAGCTC | 1 cut(s) | 170 |
| Psp1406I | AACGTT | 3 cut(s) | 477, 588, 699 |
| Psp6I | CCWGG | 1 cut(s) | 1504 |
| PspFI | CCCAGC | 1 cut(s) | 161 |
| PspGI | CCWGG | 1 cut(s) | 1504 |
| PspPI | GGNCC | 5 cut(s) | 422, 977, 1199, 1310, 1681 |
| PstI | CTGCAG | 2 cut(s) | 1495, 1662 |
| PstNI | CAGNNNCTG | 4 cut(s) | 98, 329, 974, 1196 |
| PsuI | RGATCY | 2 cut(s) | 1565, 1880 |
| PsyI | GACNNNGTC | 1 cut(s) | 335 |
| PvuII | CAGCTG | 1 cut(s) | 1657 |
| RsaI | GTAC | 3 cut(s) | 283, 349, 1089 |
| RsaNI | GTAC | 3 cut(s) | 282, 348, 1088 |
| Rsr2I | CGGWCCG | 1 cut(s) | 422 |
| RsrII | CGGWCCG | 1 cut(s) | 422 |
| SacI | GAGCTC | 1 cut(s) | 170 |
| SapI | GCTCTTC | 2 cut(s) | 175, 1875 |
| SatI | GCNGC | 6 cut(s) | 751, 1084, 1417, 1491, 1494, 1658 |
| Sau3AI | GATC | 3 cut(s) | 252, 1565, 1880 |
| Sau96I | GGNCC | 5 cut(s) | 422, 977, 1199, 1310, 1681 |
| ScaI | AGTACT | 2 cut(s) | 283, 349 |
| ScrFI | CCNGG | 2 cut(s) | 153, 1506 |
| SduI | GDGCHC | 4 cut(s) | 153, 170, 1558, 1863 |
| SfaNI | GCATC | 4 cut(s) | 307, 395, 728, 1701 |
| SfcI | CTRYAG | 2 cut(s) | 1491, 1658 |
| SinI | GGWCC | 5 cut(s) | 422, 977, 1199, 1310, 1681 |
| SmlI | CTYRAG | 1 cut(s) | 1706 |
| SmoI | CTYRAG | 1 cut(s) | 1706 |
| Sse9I | AATT | 8 cut(s) | 141, 202, 507, 618, 951, 1254, 1676, 1773 |
| SsiI | CCGC | 1 cut(s) | 1751 |
| SspMI | CTAG | 2 cut(s) | 72, 210 |
| SstI | GAGCTC | 1 cut(s) | 170 |
| StyD4I | CCNGG | 2 cut(s) | 151, 1504 |
| StyI | CCWWGG | 1 cut(s) | 1481 |
| TaiI | ACGT | 3 cut(s) | 480, 591, 702 |
| TaqI | TCGA | 3 cut(s) | 389, 722, 1166 |
| TaqII | GACCGA | 3 cut(s) | 439, 772, 1707 |
| TasI | AATT | 8 cut(s) | 141, 202, 507, 618, 951, 1254, 1676, 1773 |
| TatI | WGTACW | 2 cut(s) | 281, 347 |
| TfiI | GAWTC | 1 cut(s) | 23 |
| TscAI | CASTG | 8 cut(s) | 153, 574, 685, 796, 907, 979, 1201, 1791 |
| TseFI | GTSAC | 1 cut(s) | 1719 |
| TseI | GCWGC | 6 cut(s) | 750, 1083, 1416, 1490, 1493, 1657 |
| Tsp45I | GTSAC | 1 cut(s) | 1719 |
| TspRI | CASTG | 8 cut(s) | 153, 574, 685, 796, 907, 979, 1201, 1791 |
| Tth111I | GACNNNGTC | 1 cut(s) | 335 |
| VpaK11BI | GGWCC | 5 cut(s) | 422, 977, 1199, 1310, 1681 |
| VspI | ATTAAT | 5 cut(s) | 369, 813, 1035, 1146, 1257 |
| XapI | RAATTY | 1 cut(s) | 141 |
| XceI | RCATGY | 1 cut(s) | 1751 |
| XspI | CTAG | 2 cut(s) | 72, 210 |
| ZrmI | AGTACT | 2 cut(s) | 283, 349 |