pycom06g00760

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0000902
Physical Location & Seq
Reverse (-)
691422 .. 692159
738 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g00760.1

Sequence Viewer

Length: 738 bp
ATGATGAACTCGAATCTCAGCAACAATGCACTGGCCAACAGTGTGCTTGGTTCATCTGTGTGCCATAAGCAATCCACATTACCGGTAAAAAAGGTGGCGTTGAGAGATGTACAGAACGATAATAGAAGCTGTACGCCTAGTTATCCTGAGAATTCTTTTCTAGGACGGCTGCTCGCAGATCCAATTAAGGTTTCTGGAACTAAGATACTCAGCCCTGAGTTTGCGCGGAGCCCTCCTTGCCACCAGTTCACGAGAATCAGCGATCCAAGTGATCATCTCATGCATGGTGGGGTTGTGAAGAAGTTAGATTCGGAGCTAGGAAAGCGAAGAGCTCAAGGTGTTAAGGAAGATTGTCTAAATTTCAAACGACATTGTTCGCAAAAGCAGCCAGACCTACCTAAAGAAAGAAACAAGAAGCAAGAGTTAGAGCCATCTTGTATACCTGCATTTTCACCAACGCATTGGGCTTCTCCGATTAAATTCTCACCTAATAGACCACCAGTTCCAAATTTTCTTAGAAAGTCTAGTAATGGCCTTCCAGCTGCTCATTCCAAGCACCTTAGATTTACTCCTGAATCTGAAGTTCCCCAATCAATTCTTTCTGAGAGGAACCGTGATGAGGAAAGGACAGAACGGTTTCTACATCTGCAGAACCTCTTGAAACACTTTGACGAGTCTGATCAGAGCGAATATCTCCACAGTATGTCACTGTCTTCTGGCAATGCCTTTTTAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LIN52

Protein Analysis

246

Amino Acids

27.61

Weight (kDa)

9.37

Isoelectric Point (pI)

77.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 451
AccI GTMKAC 1 cut(s) 439
AccII CGCG 1 cut(s) 226
AciI CCGC 1 cut(s) 226
AclWI GGATC 2 cut(s) 173, 257
AcoI YGGCCR 1 cut(s) 33
AcsI RAATTY 4 cut(s) 151, 358, 479, 508
AcuI CTGAAG 1 cut(s) 600
AfaI GTAC 2 cut(s) 111, 133
AfiI CCNNNNNNNGG 1 cut(s) 619
AgeI ACCGGT 1 cut(s) 82
AgsI TTSAA 2 cut(s) 364, 661
AjuI GAANNNNNNNTTGG 2 cut(s) 175, 207
AluBI AGCT 4 cut(s) 129, 316, 332, 542
AluI AGCT 4 cut(s) 129, 316, 332, 542
Alw21I GWGCWC 1 cut(s) 334
AlwI GGATC 2 cut(s) 173, 257
AoxI GGCC 2 cut(s) 33, 532
ApeKI GCWGC 3 cut(s) 169, 385, 542
ApoI RAATTY 4 cut(s) 151, 358, 479, 508
AsiGI ACCGGT 1 cut(s) 82
Asp700I GAANNNNTTC 1 cut(s) 636
AspLEI GCGC 1 cut(s) 226
AsuHPI GGTGA 2 cut(s) 444, 477
BalI TGGCCA 1 cut(s) 35
BanII GRGCYC 2 cut(s) 233, 334
BauI CACGAG 1 cut(s) 250
BbsI GAAGAC 1 cut(s) 705
Bbv12I GWGCWC 1 cut(s) 334
BbvI GCAGC 3 cut(s) 156, 397, 529
BccI CCATC 1 cut(s) 439
BceAI ACGGC 1 cut(s) 182
BclI TGATCA 2 cut(s) 271, 679
BfaI CTAG 4 cut(s) 138, 161, 317, 525
BfmI CTRYAG 1 cut(s) 647
BfuAI ACCTGC 1 cut(s) 451
BisI GCNGC 3 cut(s) 170, 386, 543
BlsI GCNGC 3 cut(s) 171, 387, 544
BmiI GGNNCC 2 cut(s) 230, 611
BpiI GAAGAC 1 cut(s) 705
BpuEI CTTGAG 1 cut(s) 318
BsaWI WCCGGW 1 cut(s) 82
Bsc4I CCNNNNNNNGG 1 cut(s) 619
Bse118I RCCGGY 1 cut(s) 82
Bse1I ACTGG 3 cut(s) 36, 244, 500
Bse3DI GCAATG 1 cut(s) 727
BseLI CCNNNNNNNGG 1 cut(s) 619
BseMI GCAATG 1 cut(s) 727
BseMII CTCAG 5 cut(s) 31, 138, 207, 223, 594
BseNI ACTGG 3 cut(s) 36, 244, 500
BseXI GCAGC 3 cut(s) 156, 397, 529
Bsh1236I CGCG 1 cut(s) 226
BshFI GGCC 2 cut(s) 35, 534
BshTI ACCGGT 1 cut(s) 82
BsiHKAI GWGCWC 1 cut(s) 334
BsiSI CCGG 1 cut(s) 83
BslI CCNNNNNNNGG 1 cut(s) 619
BsnI GGCC 2 cut(s) 35, 534
Bsp1286I GDGCHC 2 cut(s) 233, 334
Bsp1407I TGTACA 1 cut(s) 109
Bsp143I GATC 4 cut(s) 178, 262, 271, 679
BspACI CCGC 1 cut(s) 226
BspANI GGCC 2 cut(s) 35, 534
BspCNI CTCAG 5 cut(s) 30, 139, 208, 222, 595
BspFNI CGCG 1 cut(s) 226
BspLI GGNNCC 2 cut(s) 230, 611
BspMAI CTGCAG 1 cut(s) 651
BspMI ACCTGC 1 cut(s) 451
BspPI GGATC 2 cut(s) 173, 257
BspQI GCTCTTC 1 cut(s) 322
BsrDI GCAATG 1 cut(s) 727
BsrFI RCCGGY 1 cut(s) 82
BsrGI TGTACA 1 cut(s) 109
BsrI ACTGG 3 cut(s) 36, 244, 500
BssAI RCCGGY 1 cut(s) 82
BssMI GATC 4 cut(s) 178, 262, 271, 679
BssNAI GTATAC 1 cut(s) 440
BssSI CACGAG 1 cut(s) 250
Bst1107I GTATAC 1 cut(s) 440
Bst2BI CACGAG 1 cut(s) 250
Bst4CI ACNGT 5 cut(s) 41, 614, 636, 701, 711
Bst6I CTCTTC 1 cut(s) 322
BstAUI TGTACA 1 cut(s) 109
BstC8I GCNNGC 1 cut(s) 174
BstDEI CTNAG 8 cut(s) 17, 147, 201, 209, 216, 515, 560, 603
BstFNI CGCG 1 cut(s) 226
BstHHI GCGC 1 cut(s) 226
BstKTI GATC 4 cut(s) 181, 265, 274, 682
BstMBI GATC 4 cut(s) 178, 262, 271, 679
BstMWI GCNNNNNNNGC 3 cut(s) 237, 322, 385
BstSFI CTRYAG 1 cut(s) 647
BstUI CGCG 1 cut(s) 226
BstV1I GCAGC 3 cut(s) 156, 397, 529
BstV2I GAAGAC 1 cut(s) 705
BstX2I RGATCY 1 cut(s) 178
BstXI CCANNNNNNTGG 1 cut(s) 462
BstYI RGATCY 1 cut(s) 178
BstZ17I GTATAC 1 cut(s) 440
BsuRI GGCC 2 cut(s) 35, 534
BtsIMutI CAGTG 3 cut(s) 29, 46, 707
BveI ACCTGC 1 cut(s) 451
Cac8I GCNNGC 1 cut(s) 174
CfoI GCGC 1 cut(s) 226
Cfr10I RCCGGY 1 cut(s) 82
Csp6I GTAC 2 cut(s) 110, 132
CspAI ACCGGT 1 cut(s) 82
CviAII CATG 2 cut(s) 280, 284
CviQI GTAC 2 cut(s) 110, 132
DdeI CTNAG 8 cut(s) 17, 147, 201, 209, 216, 515, 560, 603
DpnI GATC 4 cut(s) 180, 264, 273, 681
DpnII GATC 4 cut(s) 178, 262, 271, 679
EaeI YGGCCR 1 cut(s) 33
Eam1104I CTCTTC 1 cut(s) 322
EarI CTCTTC 1 cut(s) 322
Ecl136II GAGCTC 1 cut(s) 332
Eco24I GRGCYC 2 cut(s) 233, 334
Eco53kI GAGCTC 1 cut(s) 332
Eco57I CTGAAG 1 cut(s) 600
EcoICRI GAGCTC 1 cut(s) 332
EcoRI GAATTC 1 cut(s) 151
EcoT22I ATGCAT 1 cut(s) 285
EcoT38I GRGCYC 2 cut(s) 233, 334
FaeI CATG 2 cut(s) 283, 287
FaiI YATR 5 cut(s) 66, 281, 285, 440, 704
FatI CATG 2 cut(s) 279, 283
FbaI TGATCA 2 cut(s) 271, 679
FblI GTMKAC 1 cut(s) 439
Fnu4HI GCNGC 3 cut(s) 170, 386, 543
FriOI GRGCYC 2 cut(s) 233, 334
Fsp4HI GCNGC 3 cut(s) 170, 386, 543
FspBI CTAG 4 cut(s) 138, 161, 317, 525
GlaI GCGC 1 cut(s) 225
GluI GCNGC 3 cut(s) 170, 386, 543
HaeIII GGCC 2 cut(s) 35, 534
HapII CCGG 1 cut(s) 83
HhaI GCGC 1 cut(s) 226
Hin1II CATG 2 cut(s) 283, 287
Hin6I GCGC 1 cut(s) 224
HinP1I GCGC 1 cut(s) 224
HinfI GANTC 5 cut(s) 13, 255, 308, 575, 674
HpaII CCGG 1 cut(s) 83
HphI GGTGA 2 cut(s) 444, 477
Hpy166II GTNNAC 2 cut(s) 249, 440
Hpy188I TCNGA 6 cut(s) 313, 474, 580, 604, 679, 684
Hpy188III TCNNGA 5 cut(s) 146, 195, 250, 572, 658
Hpy8I GTNNAC 2 cut(s) 249, 440
HpyAV CCTTC 1 cut(s) 545
HpyCH4III ACNGT 5 cut(s) 41, 614, 636, 701, 711
HpyCH4V TGCA 4 cut(s) 29, 283, 446, 649
HpyF10VI GCNNNNNNNGC 3 cut(s) 237, 322, 385
HpyF3I CTNAG 8 cut(s) 17, 147, 201, 209, 216, 515, 560, 603
Hsp92II CATG 2 cut(s) 283, 287
HspAI GCGC 1 cut(s) 224
Ksp22I TGATCA 2 cut(s) 271, 679
Kzo9I GATC 4 cut(s) 178, 262, 271, 679
LguI GCTCTTC 1 cut(s) 322
LmnI GCTCC 2 cut(s) 228, 313
Lsp1109I GCAGC 3 cut(s) 156, 397, 529
MaeI CTAG 4 cut(s) 138, 161, 317, 525
MaeIII GTNAC 1 cut(s) 705
MalI GATC 4 cut(s) 180, 264, 273, 681
MboI GATC 4 cut(s) 178, 262, 271, 679
MboII GAAGA 4 cut(s) 310, 339, 359, 705
MflI RGATCY 1 cut(s) 178
MhlI GDGCHC 2 cut(s) 233, 334
MlsI TGGCCA 1 cut(s) 35
MluCI AATT 6 cut(s) 151, 183, 358, 479, 508, 594
MluNI TGGCCA 1 cut(s) 35
MlyI GAGTC 1 cut(s) 683
MnlI CCTC 4 cut(s) 243, 600, 613, 665
Mox20I TGGCCA 1 cut(s) 35
Mph1103I ATGCAT 1 cut(s) 285
MroXI GAANNNNTTC 1 cut(s) 636
MscI TGGCCA 1 cut(s) 35
MseI TTAA 4 cut(s) 186, 342, 477, 731
MslI CAYNNNNRTG 1 cut(s) 58
Msp20I TGGCCA 1 cut(s) 35
MspA1I CMGCKG 1 cut(s) 542
MspI CCGG 1 cut(s) 83
MvnI CGCG 1 cut(s) 226
MwoI GCNNNNNNNGC 3 cut(s) 237, 322, 385
NdeII GATC 4 cut(s) 178, 262, 271, 679
NlaIII CATG 2 cut(s) 283, 287
NlaIV GGNNCC 2 cut(s) 230, 611
NmuCI GTSAC 1 cut(s) 705
NsiI ATGCAT 1 cut(s) 285
PciSI GCTCTTC 1 cut(s) 322
PdmI GAANNNNTTC 1 cut(s) 636
PfeI GAWTC 4 cut(s) 13, 255, 308, 575
PinAI ACCGGT 1 cut(s) 82
PkrI GCNGC 3 cut(s) 171, 387, 544
PleI GAGTC 1 cut(s) 682
PpsI GAGTC 1 cut(s) 682
Psp124BI GAGCTC 1 cut(s) 334
PspN4I GGNNCC 2 cut(s) 230, 611
PsrI GAACNNNNNNTAC 2 cut(s) 624, 656
PstI CTGCAG 1 cut(s) 651
PsuI RGATCY 1 cut(s) 178
PvuII CAGCTG 1 cut(s) 542
RsaI GTAC 2 cut(s) 111, 133
RsaNI GTAC 2 cut(s) 110, 132
RseI CAYNNNNRTG 1 cut(s) 58
SacI GAGCTC 1 cut(s) 334
SapI GCTCTTC 1 cut(s) 322
SaqAI TTAA 4 cut(s) 186, 342, 477, 731
SatI GCNGC 3 cut(s) 170, 386, 543
Sau3AI GATC 4 cut(s) 178, 262, 271, 679
SchI GAGTC 1 cut(s) 683
SduI GDGCHC 2 cut(s) 233, 334
SfcI CTRYAG 1 cut(s) 647
SmiMI CAYNNNNRTG 1 cut(s) 58
SmlI CTYRAG 1 cut(s) 333
SmoI CTYRAG 1 cut(s) 333
Sse9I AATT 6 cut(s) 151, 183, 358, 479, 508, 594
SsiI CCGC 1 cut(s) 226
SspMI CTAG 4 cut(s) 138, 161, 317, 525
SstI GAGCTC 1 cut(s) 334
TaaI ACNGT 5 cut(s) 41, 614, 636, 701, 711
TaqI TCGA 1 cut(s) 11
TasI AATT 6 cut(s) 151, 183, 358, 479, 508, 594
TatI WGTACW 1 cut(s) 109
TfiI GAWTC 4 cut(s) 13, 255, 308, 575
Tru1I TTAA 4 cut(s) 186, 342, 477, 731
Tru9I TTAA 4 cut(s) 186, 342, 477, 731
TscAI CASTG 3 cut(s) 36, 46, 714
TseFI GTSAC 1 cut(s) 705
TseI GCWGC 3 cut(s) 169, 385, 542
Tsp45I GTSAC 1 cut(s) 705
TspDTI ATGAA 2 cut(s) 20, 42
TspRI CASTG 3 cut(s) 36, 46, 714
XapI RAATTY 4 cut(s) 151, 358, 479, 508
XmiI GTMKAC 1 cut(s) 439
XmnI GAANNNNTTC 1 cut(s) 636
XspI CTAG 4 cut(s) 138, 161, 317, 525
Zsp2I ATGCAT 1 cut(s) 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.