Rroxscaffold_3G00244230

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000902
Physical Location & Seq
Reverse (-)
36750472 .. 36752986
2515 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00244230.1

Sequence Viewer

Length: 747 bp
ATGGTGAACTCTAGCCTCGACAACAATGCACTGGGTGACAGTGTGGTTAATTCACCTATCTCTCATAAACAATCAACATTAAGAATGAAAAAGGTGGCATTGCGAGATGTGCAGAATGATAATAGGATCTATATGCCTAATCATCCTGAAAATTCTTGTAATCTAGGACGGCAAGTTGGGGATCTTATTAAGGTTACTGGAACTAAGATAGTCACCCCTGAGCGTCCTCGGTGCTCCCCTTGCCACCAGTTCTCGAACGGTTTATGTGAGCAAGCACTAGGCAAGAGAAGAATTCAAGACATGACAGACCAAAGTGCTGATTGTCTCAATTCCAAACGACATTTACAGAAGCAGGCAGGTGTAACTGATGACAGAACCAAGAAGCAGGAGAATGAGAGTCCTTGTGCTCGTTCCAGGCACCTTAAACTTACTCCTGATCGTATGGTTTCTAACTTGGTTGATCCTAAGAGGAACAATGATGAGAACAGGACAGAGCGGTTTCTATGTCTGCAGAATCTCTTGAAACTCATTGATGAGTCTAATCAGGGTGAATATATCCAGATGCTTCGTTGTTTATCATCATCAGAGCTTAACAGACATGCTGTTGAGCTAGAGAAACGATCAATGCTGCTATCAGTCGAGGAAGCAAAAGAGATCCAAAGGATGAAGGCTCTAAATATTTTGGTCAAGTCCCCAATGACAAGCAATTCCCCATTGACATCTGAGCAAGTTCAATCCAAGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LIN52

Protein Analysis

248

Amino Acids

28.16

Weight (kDa)

9.22

Isoelectric Point (pI)

62.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 347
Acc36I ACCTGC 1 cut(s) 347
AccB1I GGYRCC 1 cut(s) 417
AccBSI CCGCTC 1 cut(s) 496
AciI CCGC 1 cut(s) 496
AclWI GGATC 4 cut(s) 134, 189, 455, 649
AcsI RAATTY 2 cut(s) 151, 291
AdeI CACNNNGTG 1 cut(s) 35
AgsI TTSAA 3 cut(s) 296, 523, 734
AjnI CCWGG 1 cut(s) 413
AluBI AGCT 2 cut(s) 589, 610
AluI AGCT 2 cut(s) 589, 610
Alw21I GWGCWC 2 cut(s) 236, 409
Alw26I GTCTC 1 cut(s) 329
AlwI GGATC 4 cut(s) 134, 189, 455, 649
ApeKI GCWGC 1 cut(s) 628
ApoI RAATTY 2 cut(s) 151, 291
AsuHPI GGTGA 5 cut(s) 16, 45, 47, 205, 560
BanI GGYRCC 1 cut(s) 417
Bbv12I GWGCWC 2 cut(s) 236, 409
BbvI GCAGC 1 cut(s) 615
BceAI ACGGC 1 cut(s) 185
BcgI CGANNNNNNTGC 2 cut(s) 8, 42
BciT130I CCWGG 1 cut(s) 415
BcoDI GTCTC 1 cut(s) 329
BfaI CTAG 4 cut(s) 12, 164, 278, 611
BfmI CTRYAG 1 cut(s) 509
BfuAI ACCTGC 1 cut(s) 347
BisI GCNGC 1 cut(s) 629
BlsI GCNGC 1 cut(s) 630
Bme1390I CCNGG 1 cut(s) 415
BmiI GGNNCC 1 cut(s) 419
BmrFI CCNGG 1 cut(s) 415
BmrI ACTGGG 1 cut(s) 41
BmsI GCATC 1 cut(s) 552
BmuI ACTGGG 1 cut(s) 41
Bpu10I CCTNAGC 1 cut(s) 219
BsaJI CCNNGG 1 cut(s) 227
Bse1I ACTGG 3 cut(s) 36, 202, 247
Bse3DI GCAATG 1 cut(s) 98
BseBI CCWGG 1 cut(s) 415
BseDI CCNNGG 1 cut(s) 227
BseGI GGATG 2 cut(s) 142, 669
BseMI GCAATG 1 cut(s) 98
BseMII CTCAG 2 cut(s) 210, 714
BseNI ACTGG 3 cut(s) 36, 202, 247
BseXI GCAGC 1 cut(s) 615
BsgI GTGCAG 1 cut(s) 131
BshNI GGYRCC 1 cut(s) 417
BsiHKAI GWGCWC 2 cut(s) 236, 409
BslFI GGGAC 1 cut(s) 676
BsmAI GTCTC 1 cut(s) 329
BsmFI GGGAC 1 cut(s) 676
Bsp1286I GDGCHC 2 cut(s) 236, 409
Bsp143I GATC 6 cut(s) 126, 181, 436, 460, 620, 654
BspACI CCGC 1 cut(s) 496
BspCNI CTCAG 2 cut(s) 211, 715
BspLI GGNNCC 1 cut(s) 419
BspMAI CTGCAG 1 cut(s) 513
BspMI ACCTGC 1 cut(s) 347
BspPI GGATC 4 cut(s) 134, 189, 455, 649
BspT107I GGYRCC 1 cut(s) 417
BsrBI CCGCTC 1 cut(s) 496
BsrDI GCAATG 1 cut(s) 98
BsrI ACTGG 3 cut(s) 36, 202, 247
BssECI CCNNGG 1 cut(s) 227
BssMI GATC 6 cut(s) 126, 181, 436, 460, 620, 654
Bst2UI CCWGG 1 cut(s) 415
Bst4CI ACNGT 2 cut(s) 41, 260
BstC8I GCNNGC 2 cut(s) 273, 354
BstDEI CTNAG 4 cut(s) 204, 219, 465, 723
BstF5I GGATG 2 cut(s) 142, 669
BstKTI GATC 6 cut(s) 129, 184, 439, 463, 623, 657
BstMAI GTCTC 1 cut(s) 329
BstMBI GATC 6 cut(s) 126, 181, 436, 460, 620, 654
BstMWI GCNNNNNNNGC 2 cut(s) 109, 240
BstNI CCWGG 1 cut(s) 415
BstNSI RCATGY 1 cut(s) 602
BstSCI CCNGG 1 cut(s) 413
BstSFI CTRYAG 1 cut(s) 509
BstV1I GCAGC 1 cut(s) 615
BstX2I RGATCY 3 cut(s) 126, 181, 654
BstYI RGATCY 3 cut(s) 126, 181, 654
BtsCI GGATG 2 cut(s) 142, 669
BtsIMutI CAGTG 2 cut(s) 29, 46
BveI ACCTGC 1 cut(s) 347
Cac8I GCNNGC 2 cut(s) 273, 354
CseI GACGC 1 cut(s) 212
CviAII CATG 2 cut(s) 301, 599
CviJI RGCY 4 cut(s) 15, 589, 610, 671
CviKI_1 RGCY 4 cut(s) 15, 589, 610, 671
DdeI CTNAG 4 cut(s) 204, 219, 465, 723
DpnI GATC 6 cut(s) 128, 183, 438, 462, 622, 656
DpnII GATC 6 cut(s) 126, 181, 436, 460, 620, 654
DraIII CACNNNGTG 1 cut(s) 35
EcoRI GAATTC 1 cut(s) 291
EcoRII CCWGG 1 cut(s) 413
FaeI CATG 2 cut(s) 304, 602
FaiI YATR 9 cut(s) 66, 132, 134, 265, 302, 443, 505, 555, 600
FaqI GGGAC 1 cut(s) 676
FatI CATG 2 cut(s) 300, 598
Fnu4HI GCNGC 1 cut(s) 629
FokI GGATG 2 cut(s) 129, 676
Fsp4HI GCNGC 1 cut(s) 629
FspBI CTAG 4 cut(s) 12, 164, 278, 611
GluI GCNGC 1 cut(s) 629
HgaI GACGC 1 cut(s) 212
Hin1II CATG 2 cut(s) 304, 602
HinfI GANTC 3 cut(s) 397, 514, 536
HphI GGTGA 5 cut(s) 16, 45, 47, 205, 560
Hpy166II GTNNAC 1 cut(s) 7
Hpy188I TCNGA 2 cut(s) 586, 724
Hpy188III TCNNGA 6 cut(s) 146, 253, 296, 434, 520, 559
Hpy8I GTNNAC 1 cut(s) 7
HpyAV CCTTC 1 cut(s) 661
HpyCH4III ACNGT 2 cut(s) 41, 260
HpyCH4V TGCA 3 cut(s) 29, 112, 511
HpyF10VI GCNNNNNNNGC 2 cut(s) 109, 240
HpyF3I CTNAG 4 cut(s) 204, 219, 465, 723
Hsp92II CATG 2 cut(s) 304, 602
Kzo9I GATC 6 cut(s) 126, 181, 436, 460, 620, 654
LmnI GCTCC 1 cut(s) 239
Lsp1109I GCAGC 1 cut(s) 615
LweI GCATC 1 cut(s) 552
MaeI CTAG 4 cut(s) 12, 164, 278, 611
MaeIII GTNAC 4 cut(s) 35, 193, 211, 361
MalI GATC 6 cut(s) 128, 183, 438, 462, 622, 656
MbiI CCGCTC 1 cut(s) 496
MboI GATC 6 cut(s) 126, 181, 436, 460, 620, 654
MboII GAAGA 1 cut(s) 300
MflI RGATCY 3 cut(s) 126, 181, 654
MhlI GDGCHC 2 cut(s) 236, 409
MluCI AATT 5 cut(s) 49, 151, 291, 328, 706
MlyI GAGTC 2 cut(s) 406, 545
MnlI CCTC 4 cut(s) 26, 237, 462, 634
MseI TTAA 5 cut(s) 48, 80, 189, 423, 591
MspR9I CCNGG 1 cut(s) 415
MvaI CCWGG 1 cut(s) 415
MwoI GCNNNNNNNGC 2 cut(s) 109, 240
NdeII GATC 6 cut(s) 126, 181, 436, 460, 620, 654
NlaIII CATG 2 cut(s) 304, 602
NlaIV GGNNCC 1 cut(s) 419
NmuCI GTSAC 2 cut(s) 35, 211
NspI RCATGY 1 cut(s) 602
PaqCI CACCTGC 1 cut(s) 347
PfeI GAWTC 1 cut(s) 514
PkrI GCNGC 1 cut(s) 630
PleI GAGTC 2 cut(s) 405, 544
PpsI GAGTC 2 cut(s) 405, 544
Psp6I CCWGG 1 cut(s) 413
PspGI CCWGG 1 cut(s) 413
PspN4I GGNNCC 1 cut(s) 419
PstI CTGCAG 1 cut(s) 513
PsuI RGATCY 3 cut(s) 126, 181, 654
SaqAI TTAA 5 cut(s) 48, 80, 189, 423, 591
SatI GCNGC 1 cut(s) 629
Sau3AI GATC 6 cut(s) 126, 181, 436, 460, 620, 654
SchI GAGTC 2 cut(s) 406, 545
ScrFI CCNGG 1 cut(s) 415
SduI GDGCHC 2 cut(s) 236, 409
SetI ASST 7 cut(s) 58, 96, 195, 361, 423, 591, 612
SfaNI GCATC 1 cut(s) 552
SfcI CTRYAG 1 cut(s) 509
Sse9I AATT 5 cut(s) 49, 151, 291, 328, 706
SsiI CCGC 1 cut(s) 496
SspI AATATT 1 cut(s) 679
SspMI CTAG 4 cut(s) 12, 164, 278, 611
StyD4I CCNGG 1 cut(s) 413
TaaI ACNGT 2 cut(s) 41, 260
TaqI TCGA 3 cut(s) 18, 254, 639
TasI AATT 5 cut(s) 49, 151, 291, 328, 706
TfiI GAWTC 1 cut(s) 514
Tru1I TTAA 5 cut(s) 48, 80, 189, 423, 591
Tru9I TTAA 5 cut(s) 48, 80, 189, 423, 591
TscAI CASTG 2 cut(s) 36, 46
TseFI GTSAC 2 cut(s) 35, 211
TseI GCWGC 1 cut(s) 628
Tsp45I GTSAC 2 cut(s) 35, 211
TspDTI ATGAA 2 cut(s) 101, 680
TspRI CASTG 2 cut(s) 36, 46
XapI RAATTY 2 cut(s) 151, 291
XceI RCATGY 1 cut(s) 602
XspI CTAG 4 cut(s) 12, 164, 278, 611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.