AT4G38900
BZIP Family

BEST Arabidopsis thaliana protein match is Basic-leucine zipper (bZIP) transcription factor family protein (TAIR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0001797
Physical Location & Seq
Reverse (-)
18139237 .. 18142071
2835 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G38900.1

Sequence Viewer

Length: 1662 bp
ATGGGTGATACAGAGAAGTGTAACAGTGATATGATCCAGAGACTTCATTCATCTTTCGGCACTACTTCTTCTTCCATTCCCAAAAATCCCATTTCTCAGCTCGATTTAAACCCTAATTTCATCCGCTCATCAGCTCCTCAATTCTCCAAGCCTTTCAGTGACAGTGGCAAACGAATCGGTGTTCCTCCGTCGCACCCCAACTTAATCCCACCGACTTCTCCGTTTTCTCAGATCCCGACCACCCGACAACCCGGTTCGCATAATTTTAACCCGGGAGGAGCTAATCATTCACGGTCAATGTCACAGCCCAACTCTTTCTTCTCTTTTGACTCCTTACCTCCGTTAAGCCCTTCTCCGTTTCGAGATCACGATGTTTCAATGGAGGATAGAGATTCCGGCGTGTTTAACAGCAACCATTCGTTGCCTCCATCGCCGTTCACGAGGTGTAATTCGACCTCTTCTAGCTCCTTGAGAGTCGGTGAGAGTTTACCTCCGAGAAAGTCTCATAGACGCTCCAACAGTGATATCCCCAGTGGGTTTAATTCGATGCCTTTGATCCCTCCGAGACCATTGGAGAGGTCTTTTTCTGGTGGGGAGTGTGCTGATTGGTCAAAGTCTAATCCTTTTGTGAAGAAGGAATCGAGCTGCGAAAGGGAAGGTGTCGGAGAGAGAGAAGCTATGGATGATCTCTTCTCAGCATATATGAATCTTGAAAACATTGATGTGTTGAACTCCTCTGAAGCTGATGATAGCAAGAACGGTAATGAGAATAGGGATGATATGGAGAGCAGCAGAGCAAGCGGGACCAAGACTAACGGTAGTGATACGGAAGGAGAGAGCAGCAGTGTCAATGAGAGTGCCAATAATAATATGAATTCTTCTGGTGAAAAGAGAGAGAGCGTGAAGAGAAGAGCGGCTGGAGGAGATATTGCTCCTACCACCAGACATTACAGGAGTGTTTCAGTGGACAGTTGTTTCATGGAGAAGTTGTCTTTTGGTGATGAATCTCTAAAGCCGCCTCCTTCTCCTGGATCTATGTCAAGGAAAGTTTCCCCTACCAATTCGGTTGATGGGAACTCGGGTGCTGCTTTTAGCATCGAGTTCAATAACGGTGAGTTTACTGCAGCGGAAATGAAGAAGATCATGGCAAATGATAAACTAGCAGAGATGGCCATGTCTGACCCTAAACGTGTCAAAAGGAATGATCCTCTTTTCAGAATCTTAGCGAACCGTCAATCCGCAGCACGGTCAAAGGAGAGGAAGATGCGGTACATAGTAGAATTGGAACACAAAGTGCAGACTCTTCAGACCGAGGCTACCACATTGTCTGCTCAGCTCACACTTTTGCAGCGCGATATGATGGGGTTGACAAATCAGAACAATGAGCTTAAGTTCCGGCTTCAAGCAATGGAGCAACAAGCGCGTCTTCGCGATGCTCTGAACGAAGCACTGAATGGAGAAGTCCAGCGACTGAAACTGGCAATCGGTGAGAGCAGTCAGAACGAATCAGAGAGATCAAAGATGCAATCACTCAACGCTGAGATGTTCCAGCAACTCAACATCAGCCAGTTAAGACAGCAGCCACAACAGATGCAGCAACAGTCTCATCAGCAGAACCACCAGAATGGAACCATGGCAACAAAATCTGAATCAAATGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bZIP_1 bZIP_2

Protein Analysis

553

Amino Acids

61.16

Weight (kDa)

6.63

Isoelectric Point (pI)

62.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_1 PF00170 406 - 459 4.9e-07 bZIP transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 126, 914
AccII CGCG 3 cut(s) 1353, 1423, 1431
AciI CCGC 7 cut(s) 124, 801, 914, 1016, 1127, 1239, 1267
AclWI GGATC 5 cut(s) 28, 226, 550, 1039, 1199
AcoI YGGCCR 1 cut(s) 1170
AcsI RAATTY 1 cut(s) 874
AcuI CTGAAG 2 cut(s) 759, 1289
AdeI CACNNNGTG 2 cut(s) 444, 1294
AfaI GTAC 1 cut(s) 1271
AfiI CCNNNNNNNGG 2 cut(s) 1028, 1245
AflII CTTAAG 1 cut(s) 1388
AflIII ACRYGT 1 cut(s) 1189
AgsI TTSAA 5 cut(s) 378, 713, 730, 1105, 1403
AjnI CCWGG 1 cut(s) 1027
AjuI GAANNNNNNNTTGG 2 cut(s) 302, 334
AloI GAACNNNNNNTCC 2 cut(s) 1220, 1252
AluBI AGCT 9 cut(s) 100, 134, 281, 465, 645, 677, 743, 1336, 1387
AluI AGCT 9 cut(s) 100, 134, 281, 465, 645, 677, 743, 1336, 1387
Alw26I GTCTC 4 cut(s) 34, 507, 559, 1608
AlwI GGATC 5 cut(s) 28, 226, 550, 1039, 1199
AlwNI CAGNNNCTG 1 cut(s) 1471
Ama87I CYCGRG 2 cut(s) 271, 1078
AoxI GGCC 1 cut(s) 1170
ApeKI GCWGC 9 cut(s) 645, 789, 840, 1085, 1124, 1241, 1348, 1579, 1594
ApoI RAATTY 1 cut(s) 874
AspLEI GCGC 2 cut(s) 1353, 1423
AspS9I GGNCC 1 cut(s) 804
AsuC2I CCSGG 3 cut(s) 252, 272, 273
AsuHPI GGTGA 6 cut(s) 17, 491, 896, 1010, 1124, 1499
AvaI CYCGRG 2 cut(s) 271, 1078
AvaII GGWCC 1 cut(s) 804
BalI TGGCCA 1 cut(s) 1172
BarI GAAGNNNNNNTAC 2 cut(s) 1253, 1285
BauI CACGAG 1 cut(s) 439
BbsI GAAGAC 1 cut(s) 1418
BbvI GCAGC 9 cut(s) 632, 801, 852, 1072, 1136, 1253, 1360, 1591, 1606
BccI CCATC 4 cut(s) 436, 1064, 1162, 1354
BceAI ACGGC 1 cut(s) 418
BcgI CGANNNNNNTGC 2 cut(s) 157, 191
BciT130I CCWGG 1 cut(s) 1029
BcnI CCSGG 3 cut(s) 252, 272, 273
BcoDI GTCTC 4 cut(s) 34, 507, 559, 1608
BfaI CTAG 2 cut(s) 462, 1160
BfmI CTRYAG 1 cut(s) 1122
BfrI CTTAAG 1 cut(s) 1388
BlpI GCTNAGC 1 cut(s) 1332
Bme1390I CCNGG 4 cut(s) 252, 272, 273, 1029
Bme18I GGWCC 1 cut(s) 804
BmeT110I CYCGRG 2 cut(s) 271, 1078
BmgT120I GGNCC 1 cut(s) 804
BmiI GGNNCC 2 cut(s) 805, 1630
BmrFI CCNGG 4 cut(s) 252, 272, 273, 1029
BmrI ACTGGG 1 cut(s) 525
BmsI GCATC 6 cut(s) 537, 1104, 1254, 1423, 1512, 1581
BmuI ACTGGG 1 cut(s) 525
BpiI GAAGAC 1 cut(s) 1418
BplI GAGNNNNNCTC 4 cut(s) 475, 507, 487, 519
BpmI CTGGAG 1 cut(s) 939
Bpu1102I GCTNAGC 1 cut(s) 1332
BpuEI CTTGAG 1 cut(s) 490
BpuMI CCSGG 3 cut(s) 252, 272, 273
BsaI GGTCTC 1 cut(s) 559
BsaJI CCNNGG 3 cut(s) 271, 1311, 1632
BsaXI ACNNNNNCTCC 2 cut(s) 974, 1004
Bsc4I CCNNNNNNNGG 2 cut(s) 1028, 1245
Bse1I ACTGG 3 cut(s) 531, 1482, 1567
Bse3DI GCAATG 1 cut(s) 1413
BseBI CCWGG 1 cut(s) 1029
BseDI CCNNGG 3 cut(s) 271, 1311, 1632
BseGI GGATG 3 cut(s) 120, 688, 781
BseLI CCNNNNNNNGG 2 cut(s) 1028, 1245
BseMI GCAATG 1 cut(s) 1413
BseMII CTCAG 5 cut(s) 110, 242, 708, 1346, 1530
BseNI ACTGG 3 cut(s) 531, 1482, 1567
BseRI GAGGAG 4 cut(s) 126, 291, 724, 936
BseXI GCAGC 9 cut(s) 632, 801, 852, 1072, 1136, 1253, 1360, 1591, 1606
BsgI GTGCAG 1 cut(s) 1316
Bsh1236I CGCG 3 cut(s) 1353, 1423, 1431
BshFI GGCC 1 cut(s) 1172
BsiHKCI CYCGRG 2 cut(s) 271, 1078
BsiSI CCGG 4 cut(s) 252, 272, 396, 1396
BslFI GGGAC 1 cut(s) 817
BslI CCNNNNNNNGG 2 cut(s) 1028, 1245
BsmAI GTCTC 4 cut(s) 34, 507, 559, 1608
BsmFI GGGAC 1 cut(s) 817
BsnI GGCC 1 cut(s) 1172
Bso31I GGTCTC 1 cut(s) 559
BsoBI CYCGRG 2 cut(s) 271, 1078
Bsp143I GATC 9 cut(s) 33, 231, 364, 555, 685, 1031, 1140, 1204, 1514
Bsp1720I GCTNAGC 1 cut(s) 1332
Bsp19I CCATGG 1 cut(s) 1632
Bsp68I TCGCGA 1 cut(s) 1431
BspACI CCGC 7 cut(s) 124, 801, 914, 1016, 1127, 1239, 1267
BspANI GGCC 1 cut(s) 1172
BspCNI CTCAG 5 cut(s) 109, 241, 707, 1345, 1531
BspFNI CGCG 3 cut(s) 1353, 1423, 1431
BspLI GGNNCC 2 cut(s) 805, 1630
BspMAI CTGCAG 1 cut(s) 1126
BspPI GGATC 5 cut(s) 28, 226, 550, 1039, 1199
BspQI GCTCTTC 1 cut(s) 904
BspTI CTTAAG 1 cut(s) 1388
BspTNI GGTCTC 1 cut(s) 559
BsrBI CCGCTC 2 cut(s) 126, 914
BsrDI GCAATG 1 cut(s) 1413
BsrI ACTGG 3 cut(s) 531, 1482, 1567
BssECI CCNNGG 3 cut(s) 271, 1311, 1632
BssMI GATC 9 cut(s) 33, 231, 364, 555, 685, 1031, 1140, 1204, 1514
BssSI CACGAG 1 cut(s) 439
BssT1I CCWWGG 1 cut(s) 1632
Bst2BI CACGAG 1 cut(s) 439
Bst2UI CCWGG 1 cut(s) 1029
Bst6I CTCTTC 5 cut(s) 463, 695, 899, 904, 1308
BstAFI CTTAAG 1 cut(s) 1388
BstC8I GCNNGC 1 cut(s) 799
BstDEI CTNAG 6 cut(s) 96, 228, 694, 1222, 1332, 1539
BstDSI CCRYGG 1 cut(s) 1632
BstF5I GGATG 3 cut(s) 120, 688, 781
BstFNI CGCG 3 cut(s) 1353, 1423, 1431
BstHHI GCGC 2 cut(s) 1353, 1423
BstKTI GATC 9 cut(s) 36, 234, 367, 558, 688, 1034, 1143, 1207, 1517
BstMAI GTCTC 4 cut(s) 34, 507, 559, 1608
BstMBI GATC 9 cut(s) 33, 231, 364, 555, 685, 1031, 1140, 1204, 1514
BstMWI GCNNNNNNNGC 4 cut(s) 430, 798, 1169, 1420
BstNI CCWGG 1 cut(s) 1029
BstSCI CCNGG 4 cut(s) 250, 270, 271, 1027
BstSFI CTRYAG 1 cut(s) 1122
BstUI CGCG 3 cut(s) 1353, 1423, 1431
BstV1I GCAGC 9 cut(s) 632, 801, 852, 1072, 1136, 1253, 1360, 1591, 1606
BstV2I GAAGAC 1 cut(s) 1418
BstX2I RGATCY 2 cut(s) 231, 1031
BstXI CCANNNNNNTGG 1 cut(s) 1625
BstYI RGATCY 2 cut(s) 231, 1031
BsuRI GGCC 1 cut(s) 1172
BtgI CCRYGG 1 cut(s) 1632
BtgZI GCGATG 2 cut(s) 414, 1446
BtsCI GGATG 3 cut(s) 120, 688, 781
BtsI GCAGTG 1 cut(s) 850
BtsIMutI CAGTG 8 cut(s) 31, 163, 169, 526, 538, 850, 969, 1448
BtuMI TCGCGA 1 cut(s) 1431
Cac8I GCNNGC 1 cut(s) 799
CaiI CAGNNNCTG 1 cut(s) 1471
CfoI GCGC 2 cut(s) 1353, 1423
Cfr13I GGNCC 1 cut(s) 804
Cfr9I CCCGGG 1 cut(s) 271
CseI GACGC 2 cut(s) 519, 1412
Csp6I GTAC 1 cut(s) 1270
CviAII CATG 4 cut(s) 979, 1144, 1174, 1633
CviQI GTAC 1 cut(s) 1270
DdeI CTNAG 6 cut(s) 96, 228, 694, 1222, 1332, 1539
DpnI GATC 9 cut(s) 35, 233, 366, 557, 687, 1033, 1142, 1206, 1516
DpnII GATC 9 cut(s) 33, 231, 364, 555, 685, 1031, 1140, 1204, 1514
DraI TTTAAA 1 cut(s) 108
DraIII CACNNNGTG 2 cut(s) 444, 1294
EaeI YGGCCR 1 cut(s) 1170
Eam1104I CTCTTC 5 cut(s) 463, 695, 899, 904, 1308
EarI CTCTTC 5 cut(s) 463, 695, 899, 904, 1308
Eco130I CCWWGG 1 cut(s) 1632
Eco31I GGTCTC 1 cut(s) 559
Eco32I GATATC 1 cut(s) 526
Eco47I GGWCC 1 cut(s) 804
Eco57I CTGAAG 2 cut(s) 759, 1289
Eco88I CYCGRG 2 cut(s) 271, 1078
EcoRI GAATTC 1 cut(s) 874
EcoRII CCWGG 1 cut(s) 1027
EcoRV GATATC 1 cut(s) 526
EcoT14I CCWWGG 1 cut(s) 1632
ErhI CCWWGG 1 cut(s) 1632
FaeI CATG 4 cut(s) 982, 1147, 1177, 1636
FalI AAGNNNNNCTT 2 cut(s) 1410, 1442
FaqI GGGAC 1 cut(s) 817
FatI CATG 4 cut(s) 978, 1143, 1173, 1632
FauI CCCGC 1 cut(s) 794
FokI GGATG 3 cut(s) 107, 695, 788
FspBI CTAG 2 cut(s) 462, 1160
GlaI GCGC 2 cut(s) 1352, 1422
GsuI CTGGAG 1 cut(s) 939
HaeIII GGCC 1 cut(s) 1172
HapII CCGG 4 cut(s) 252, 272, 396, 1396
HgaI GACGC 2 cut(s) 519, 1412
HhaI GCGC 2 cut(s) 1353, 1423
Hin1II CATG 4 cut(s) 982, 1147, 1177, 1636
Hin6I GCGC 2 cut(s) 1351, 1421
HinP1I GCGC 2 cut(s) 1351, 1421
HincII GTYRAC 1 cut(s) 1368
HindII GTYRAC 1 cut(s) 1368
HpaII CCGG 4 cut(s) 252, 272, 396, 1396
HphI GGTGA 6 cut(s) 17, 491, 896, 1010, 1124, 1499
Hpy166II GTNNAC 5 cut(s) 438, 488, 967, 1119, 1368
Hpy188III TCNNGA 7 cut(s) 37, 235, 362, 368, 439, 710, 1430
Hpy8I GTNNAC 5 cut(s) 438, 488, 967, 1119, 1368
Hpy99I CGWCG 1 cut(s) 193
HpyAV CCTTC 5 cut(s) 360, 628, 650, 824, 1032
HpyCH4IV ACGT 1 cut(s) 1189
HpyCH4V TGCA 5 cut(s) 1124, 1297, 1348, 1525, 1594
HpyF10VI GCNNNNNNNGC 4 cut(s) 430, 798, 1169, 1420
HpyF3I CTNAG 6 cut(s) 96, 228, 694, 1222, 1332, 1539
HpySE526I ACGT 1 cut(s) 1189
Hsp92II CATG 4 cut(s) 982, 1147, 1177, 1636
HspAI GCGC 2 cut(s) 1351, 1421
Kzo9I GATC 9 cut(s) 33, 231, 364, 555, 685, 1031, 1140, 1204, 1514
LguI GCTCTTC 1 cut(s) 904
LmnI GCTCC 6 cut(s) 139, 278, 470, 518, 937, 1411
Lsp1109I GCAGC 9 cut(s) 632, 801, 852, 1072, 1136, 1253, 1360, 1591, 1606
LweI GCATC 6 cut(s) 537, 1104, 1254, 1423, 1512, 1581
MaeI CTAG 2 cut(s) 462, 1160
MaeII ACGT 1 cut(s) 1189
MaeIII GTNAC 3 cut(s) 20, 158, 300
MalI GATC 9 cut(s) 35, 233, 366, 557, 687, 1033, 1142, 1206, 1516
MbiI CCGCTC 2 cut(s) 126, 914
MboI GATC 9 cut(s) 33, 231, 364, 555, 685, 1031, 1140, 1204, 1514
MflI RGATCY 2 cut(s) 231, 1031
MlsI TGGCCA 1 cut(s) 1172
MluCI AATT 8 cut(s) 115, 140, 262, 448, 541, 874, 1060, 1280
MluNI TGGCCA 1 cut(s) 1172
MlyI GAGTC 3 cut(s) 323, 483, 1294
MmeI TCCRAC 2 cut(s) 540, 643
Mox20I TGGCCA 1 cut(s) 1172
MscI TGGCCA 1 cut(s) 1172
MseI TTAA 8 cut(s) 107, 203, 267, 344, 405, 540, 1389, 1571
MslI CAYNNNNRTG 2 cut(s) 722, 1623
Msp20I TGGCCA 1 cut(s) 1172
MspA1I CMGCKG 1 cut(s) 1127
MspCI CTTAAG 1 cut(s) 1388
MspI CCGG 4 cut(s) 252, 272, 396, 1396
MspR9I CCNGG 4 cut(s) 252, 272, 273, 1029
MvaI CCWGG 1 cut(s) 1029
MvnI CGCG 3 cut(s) 1353, 1423, 1431
MwoI GCNNNNNNNGC 4 cut(s) 430, 798, 1169, 1420
NciI CCSGG 3 cut(s) 252, 272, 273
NcoI CCATGG 1 cut(s) 1632
NdeII GATC 9 cut(s) 33, 231, 364, 555, 685, 1031, 1140, 1204, 1514
NlaIII CATG 4 cut(s) 982, 1147, 1177, 1636
NlaIV GGNNCC 2 cut(s) 805, 1630
NmuCI GTSAC 2 cut(s) 158, 300
NruI TCGCGA 1 cut(s) 1431
PciSI GCTCTTC 1 cut(s) 904
PcsI WCGNNNNNNNCGW 1 cut(s) 437
PfeI GAWTC 8 cut(s) 174, 392, 638, 706, 1004, 1218, 1505, 1649
PfoI TCCNGGA 1 cut(s) 1027
PleI GAGTC 3 cut(s) 323, 482, 1294
PpsI GAGTC 3 cut(s) 323, 482, 1294
Psp6I CCWGG 1 cut(s) 1027
PspGI CCWGG 1 cut(s) 1027
PspN4I GGNNCC 2 cut(s) 805, 1630
PspPI GGNCC 1 cut(s) 804
PstI CTGCAG 1 cut(s) 1126
PstNI CAGNNNCTG 1 cut(s) 1471
PsuI RGATCY 2 cut(s) 231, 1031
RruI TCGCGA 1 cut(s) 1431
RsaI GTAC 1 cut(s) 1271
RsaNI GTAC 1 cut(s) 1270
RseI CAYNNNNRTG 2 cut(s) 722, 1623
SapI GCTCTTC 1 cut(s) 904
SaqAI TTAA 8 cut(s) 107, 203, 267, 344, 405, 540, 1389, 1571
Sau3AI GATC 9 cut(s) 33, 231, 364, 555, 685, 1031, 1140, 1204, 1514
Sau96I GGNCC 1 cut(s) 804
SchI GAGTC 3 cut(s) 323, 483, 1294
ScrFI CCNGG 4 cut(s) 252, 272, 273, 1029
SfaNI GCATC 6 cut(s) 537, 1104, 1254, 1423, 1512, 1581
SfcI CTRYAG 1 cut(s) 1122
SinI GGWCC 1 cut(s) 804
SmaI CCCGGG 1 cut(s) 273
SmiMI CAYNNNNRTG 2 cut(s) 722, 1623
SmlI CTYRAG 2 cut(s) 469, 1388
SmoI CTYRAG 2 cut(s) 469, 1388
Sse9I AATT 8 cut(s) 115, 140, 262, 448, 541, 874, 1060, 1280
SsiI CCGC 7 cut(s) 124, 801, 914, 1016, 1127, 1239, 1267
SspMI CTAG 2 cut(s) 462, 1160
StyD4I CCNGG 4 cut(s) 250, 270, 271, 1027
StyI CCWWGG 1 cut(s) 1632
TaiI ACGT 1 cut(s) 1192
TaqI TCGA 6 cut(s) 102, 361, 452, 545, 641, 1098
TaqII GACCGA 1 cut(s) 1325
TasI AATT 8 cut(s) 115, 140, 262, 448, 541, 874, 1060, 1280
TauI GCSGC 2 cut(s) 917, 1018
TfiI GAWTC 8 cut(s) 174, 392, 638, 706, 1004, 1218, 1505, 1649
Tru1I TTAA 8 cut(s) 107, 203, 267, 344, 405, 540, 1389, 1571
Tru9I TTAA 8 cut(s) 107, 203, 267, 344, 405, 540, 1389, 1571
TscAI CASTG 8 cut(s) 31, 163, 169, 526, 538, 850, 969, 1455
TseFI GTSAC 2 cut(s) 158, 300
TseI GCWGC 9 cut(s) 645, 789, 840, 1085, 1124, 1241, 1348, 1579, 1594
Tsp45I GTSAC 2 cut(s) 158, 300
TspDTI ATGAA 8 cut(s) 35, 39, 109, 719, 887, 967, 1017, 1148
TspGWI ACGGA 5 cut(s) 177, 210, 330, 345, 842
TspMI CCCGGG 1 cut(s) 271
TspRI CASTG 8 cut(s) 31, 163, 169, 526, 538, 850, 969, 1455
Vha464I CTTAAG 1 cut(s) 1388
VpaK11BI GGWCC 1 cut(s) 804
XapI RAATTY 1 cut(s) 874
XmaI CCCGGG 1 cut(s) 271
XspI CTAG 2 cut(s) 462, 1160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.