Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001797

Physical Location & Seq

Genomic Coordinates Forward (+)

21811985 .. 21816501

Gene Structure 4517 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG151000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

ATGGGTGACACTGAGGAAGCTAATAGTGATATGATGCAAAGGCTTCAATCTTCCTTTGGAACATCTTCATCATCAATTCTGAAACAGCCTTTGTCTATGGACCAACTGAACATACCCCAATTCAACACTTCACAAATTCGCTCACGCCATTTTGCTCAGAGCTTTACTGGGGATAGCAGCAAAAGATCGGGGATACCACCCTCACACCCAAACCACATCCCACCACTTTCGCCTTATTCTCAGATCCCGGTGGCAAGGCCGATTAACCAGACAATGGGTTCGCAGAATTTTAGCCCAGGAGGACCCACCCATTCGCGATCATTGTCTCAACCAGCCTTCTTTTCCCTTGATTCACTGCCCCCATTGAGCCCATCCCCCTATCGTGAATCCCCGTCCACCTCCATGTCGGAGTCCGTGGCTGTGGATGTGTCAATGGAGGATAGGGATGCAAGTTCACATTCCTTGCTGCCCCCATCACCTTTTTCCAGGGGTAATTTCTCGAGGGTCGGTGAGACTTTGCCCCCTCGCAAAGCTCATAGGAGGTCTAATAGTGATATACCATTTGGGTTTTCTACTATGATGCAACAACAATCTCTACCCCCCATTGCTCCCGTGAGGGGTTCGGGTGGTTTGGACCTGTCAATGTCTGGTGCAGAAAATTCAGGGATGGTTAAGCCAGCTCAGTTGGTTAAAAAGGAATCCAGTTGGGAAAGAGCTGGCGATAACAATGCGGAAGGGACGGGTGAGAGGAAGTCTGAAGGCGAAGTAGTGGATGATTTGTTTTCTGCATATATGAATTTGGATAGCATTGATGCTTTGAACTCTTCGGGGACTGATGACAAGAATGGTAATGAGAATCGTGAGGATATGGACAGTAGTAGAGCAAGTGGGACTAAGACAAATTGTGACAGCAGTGATAATGAAGTGGAAAGCAGTGTTAATGAAAGTGGAGGCATGCATAGACCGGGACTGAATATTATGACTGATATGAGGGAAGGGATTAAAAGGAGTGCGGGGGGAGATATTGCGCCGACCACTCGACACTTCAGAAGTGTCTCCATGGACAGTTTTATGGGTAAGCTGCAATTTGGTGATGAGTCACCTAAACTACCGCCTTCACCAGGAACTCGGCCAGGACAACTTTCCCCCAGCAATTCAATTGATACGAATTCAAATGCCTTTAGCTTGGAATTTGGAAACGGTGAGTTCAGTGGGGCTGAAATGAAGAAAATTATGGCTAATGAAAAGCTTGCCGAGATTGCAATGGCCGATCCAAAGCGTGCAAAAAGGTATTGCATCTTCATCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

436

Amino Acids

47.09

Weight (kDa)

5.5

Isoelectric Point (pI)

64.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21230 AT2G21230 AT2G21230 AT2G21230 AT4G38900 AT4G38900 AT4G38900
fragaria_vesca	FvH4_2g10670 FvH4_2g10670 FvH4_2g10670 FvH4_2g10670 FvH4_2g10670 FvH4_2g38831 FvH4_2g38831
malus_domestica	MD05G1054500.v1.1 MD08G1016000.v1.1 MD08G1016200.v1.1 MD15G1015000.v1.1 MD15G1015100.v1.1
prunus_persica	Prupe.1G369300_v2.0.a1 Prupe.1G369300_v2.0.a1
pyrus_communis	pycom08g01400 pycom08g01410 pycom15g01300
rosa_chinensis	RchiOBHm_Chr6g0268361 RchiOBHm_Chr6g0302431
rosa_laevigata	RLG00000011172 RLG00000013914
rosa_multiflora	Rmu_co8451713.1_g000001 Rmu_sc0011714.1_g000001
rosa_roxburghii	Rroxscaffold_7G00165790 Rroxscaffold_7G00199840
rosa_rugosa	Rorug06G0040800 Rorug06G0314000 Rorug06G0314100 Rorug06G0314200 Rorug06G0314200
rosa_samantha	Rh6AG160900 Rh6AG427100 Rh6BG165300 Rh6BG475600 Rh6CG153200 Rh6CG439300 Rh6DG151000 Rh6DG426300
rosa_wichuraiana	Rw6G013910 Rw6G036950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	274
AccII	CGCG	1 cut(s)	316
AciI	CCGC	3 cut(s)	731, 1013, 1112
AclWI	GGATC	2 cut(s)	238, 1265
AcoI	YGGCCR	2 cut(s)	1130, 1266
AcsI	RAATTY	6 cut(s)	135, 286, 658, 796, 1168, 1190
AcuI	CTGAAG	2 cut(s)	777, 1030
AfiI	CCNNNNNNNGG	3 cut(s)	274, 617, 1121
AgsI	TTSAA	5 cut(s)	47, 124, 820, 1158, 1173
AjnI	CCWGG	4 cut(s)	295, 485, 1120, 1132
AluBI	AGCT	8 cut(s)	20, 162, 533, 680, 716, 1081, 1185, 1249
AluI	AGCT	8 cut(s)	20, 162, 533, 680, 716, 1081, 1185, 1249
Alw26I	GTCTC	3 cut(s)	330, 506, 1060
AlwI	GGATC	2 cut(s)	238, 1265
Ama87I	CYCGRG	1 cut(s)	499
AoxI	GGCC	3 cut(s)	257, 1130, 1266
ApeKI	GCWGC	3 cut(s)	177, 466, 1081
ApoI	RAATTY	6 cut(s)	135, 286, 658, 796, 1168, 1190
ArsI	GACNNNNNNTTYG	2 cut(s)	262, 294
Asp700I	GAANNNNTTC	1 cut(s)	64
AspLEI	GCGC	1 cut(s)	1030
AspS9I	GGNCC	3 cut(s)	100, 302, 634
AsuC2I	CCSGG	2 cut(s)	248, 966
AsuHPI	GGTGA	8 cut(s)	17, 468, 521, 755, 1092, 1103, 1110, 1214
AvaI	CYCGRG	1 cut(s)	499
AvaII	GGWCC	3 cut(s)	100, 302, 634
BanII	GRGCYC	1 cut(s)	371
BarI	GAAGNNNNNNTAC	1 cut(s)	1283
BbvI	GCAGC	3 cut(s)	189, 453, 1068
BccI	CCATC	3 cut(s)	379, 481, 661
BcgI	CGANNNNNNTGC	2 cut(s)	710, 744
BciT130I	CCWGG	4 cut(s)	297, 487, 1122, 1134
BciVI	GTATCC	1 cut(s)	186
BcnI	CCSGG	2 cut(s)	248, 966
BcoDI	GTCTC	3 cut(s)	330, 506, 1060
BfuI	GTATCC	1 cut(s)	186
BisI	GCNGC	3 cut(s)	178, 467, 1082
BlsI	GCNGC	3 cut(s)	179, 468, 1083
Bme1390I	CCNGG	6 cut(s)	248, 297, 487, 966, 1122, 1134
Bme18I	GGWCC	3 cut(s)	100, 302, 634
BmeT110I	CYCGRG	1 cut(s)	499
BmgT120I	GGNCC	3 cut(s)	100, 302, 634
BmiI	GGNNCC	1 cut(s)	304
BmrFI	CCNGG	6 cut(s)	248, 297, 487, 966, 1122, 1134
BmrI	ACTGGG	1 cut(s)	177
BmsI	GCATC	5 cut(s)	24, 436, 570, 802, 1305
BmuI	ACTGGG	1 cut(s)	177
BpuMI	CCSGG	2 cut(s)	248, 966
BsaJI	CCNNGG	4 cut(s)	295, 414, 486, 1059
Bsc4I	CCNNNNNNNGG	3 cut(s)	274, 617, 1121
Bse1I	ACTGG	2 cut(s)	172, 702
Bse3DI	GCAATG	2 cut(s)	603, 1269
BseBI	CCWGG	4 cut(s)	297, 487, 1122, 1134
BseDI	CCNNGG	4 cut(s)	295, 414, 486, 1059
BseGI	GGATG	6 cut(s)	216, 371, 430, 451, 672, 778
BseLI	CCNNNNNNNGG	3 cut(s)	274, 617, 1121
BseMI	GCAATG	2 cut(s)	603, 1269
BseMII	CTCAG	3 cut(s)	170, 254, 695
BseNI	ACTGG	2 cut(s)	172, 702
BseXI	GCAGC	3 cut(s)	189, 453, 1068
BseYI	CCCAGC	1 cut(s)	1148
BsgI	GTGCAG	1 cut(s)	672
Bsh1236I	CGCG	1 cut(s)	316
BshFI	GGCC	3 cut(s)	259, 1132, 1268
BsiHKCI	CYCGRG	1 cut(s)	499
BsiSI	CCGG	2 cut(s)	248, 965
BslFI	GGGAC	4 cut(s)	751, 844, 904, 981
BslI	CCNNNNNNNGG	3 cut(s)	274, 617, 1121
BsmAI	GTCTC	3 cut(s)	330, 506, 1060
BsmFI	GGGAC	4 cut(s)	751, 844, 904, 981
BsnI	GGCC	3 cut(s)	259, 1132, 1268
BsoBI	CYCGRG	1 cut(s)	499
Bsp1286I	GDGCHC	1 cut(s)	371
Bsp143I	GATC	4 cut(s)	185, 243, 317, 1270
Bsp19I	CCATGG	1 cut(s)	1059
Bsp68I	TCGCGA	1 cut(s)	316
BspACI	CCGC	3 cut(s)	731, 1013, 1112
BspANI	GGCC	3 cut(s)	259, 1132, 1268
BspCNI	CTCAG	4 cut(s)	4, 169, 253, 694
BspFNI	CGCG	1 cut(s)	316
BspLI	GGNNCC	1 cut(s)	304
BspPI	GGATC	2 cut(s)	238, 1265
BsrDI	GCAATG	2 cut(s)	603, 1269
BsrI	ACTGG	2 cut(s)	172, 702
BssECI	CCNNGG	4 cut(s)	295, 414, 486, 1059
BssMI	GATC	4 cut(s)	185, 243, 317, 1270
BssT1I	CCWWGG	1 cut(s)	1059
Bst2UI	CCWGG	4 cut(s)	297, 487, 1122, 1134
Bst4CI	ACNGT	3 cut(s)	875, 1067, 1202
Bst6I	CTCTTC	1 cut(s)	829
BstC8I	GCNNGC	5 cut(s)	678, 718, 956, 1251, 1281
BstDEI	CTNAG	5 cut(s)	12, 156, 240, 681, 894
BstDSI	CCRYGG	2 cut(s)	414, 1059
BstENI	CCTNNNNNAGG	1 cut(s)	1119
BstF5I	GGATG	6 cut(s)	216, 371, 430, 451, 672, 778
BstFNI	CGCG	1 cut(s)	316
BstHHI	GCGC	1 cut(s)	1030
BstKTI	GATC	4 cut(s)	188, 246, 320, 1273
BstMAI	GTCTC	3 cut(s)	330, 506, 1060
BstMBI	GATC	4 cut(s)	185, 243, 317, 1270
BstMWI	GCNNNNNNNGC	1 cut(s)	1259
BstNI	CCWGG	4 cut(s)	297, 487, 1122, 1134
BstNSI	RCATGY	1 cut(s)	958
BstSCI	CCNGG	6 cut(s)	246, 295, 485, 964, 1120, 1132
BstUI	CGCG	1 cut(s)	316
BstV1I	GCAGC	3 cut(s)	189, 453, 1068
BstX2I	RGATCY	1 cut(s)	243
BstYI	RGATCY	1 cut(s)	243
BsuI	GTATCC	1 cut(s)	186
BsuRI	GGCC	3 cut(s)	259, 1132, 1268
BtgI	CCRYGG	2 cut(s)	414, 1059
BtsCI	GGATG	6 cut(s)	216, 371, 430, 451, 672, 778
BtsI	GCAGTG	3 cut(s)	353, 919, 940
BtsIMutI	CAGTG	5 cut(s)	9, 353, 919, 940, 1216
BtuMI	TCGCGA	1 cut(s)	316
Cac8I	GCNNGC	5 cut(s)	678, 718, 956, 1251, 1281
CfoI	GCGC	1 cut(s)	1030
Cfr13I	GGNCC	3 cut(s)	100, 302, 634
CviAII	CATG	3 cut(s)	403, 955, 1060
DdeI	CTNAG	5 cut(s)	12, 156, 240, 681, 894
DpnI	GATC	4 cut(s)	187, 245, 319, 1272
DpnII	GATC	4 cut(s)	185, 243, 317, 1270
EaeI	YGGCCR	2 cut(s)	1130, 1266
Eam1104I	CTCTTC	1 cut(s)	829
EarI	CTCTTC	1 cut(s)	829
Eco130I	CCWWGG	1 cut(s)	1059
Eco24I	GRGCYC	1 cut(s)	371
Eco47I	GGWCC	3 cut(s)	100, 302, 634
Eco57I	CTGAAG	2 cut(s)	777, 1030
Eco88I	CYCGRG	1 cut(s)	499
EcoNI	CCTNNNNNAGG	1 cut(s)	1119
EcoO109I	RGGNCCY	1 cut(s)	302
EcoRI	GAATTC	1 cut(s)	1168
EcoRII	CCWGG	4 cut(s)	295, 485, 1120, 1132
EcoT14I	CCWWGG	1 cut(s)	1059
EcoT22I	ATGCAT	1 cut(s)	960
EcoT38I	GRGCYC	1 cut(s)	371
ErhI	CCWWGG	1 cut(s)	1059
FaeI	CATG	3 cut(s)	406, 958, 1063
FaqI	GGGAC	4 cut(s)	751, 844, 904, 981
FatI	CATG	3 cut(s)	402, 954, 1059
FauI	CCCGC	1 cut(s)	1006
Fnu4HI	GCNGC	3 cut(s)	178, 467, 1082
FokI	GGATG	6 cut(s)	203, 358, 437, 458, 679, 785
FriOI	GRGCYC	1 cut(s)	371
Fsp4HI	GCNGC	3 cut(s)	178, 467, 1082
GlaI	GCGC	1 cut(s)	1029
GluI	GCNGC	3 cut(s)	178, 467, 1082
GsaI	CCCAGC	1 cut(s)	1152
HaeIII	GGCC	3 cut(s)	259, 1132, 1268
HapII	CCGG	2 cut(s)	248, 965
HhaI	GCGC	1 cut(s)	1030
Hin1II	CATG	3 cut(s)	406, 958, 1063
Hin6I	GCGC	1 cut(s)	1028
HinP1I	GCGC	1 cut(s)	1028
HindIII	AAGCTT	1 cut(s)	1247
HinfI	GANTC	6 cut(s)	350, 386, 410, 698, 856, 1097
HpaII	CCGG	2 cut(s)	248, 965
HphI	GGTGA	8 cut(s)	17, 468, 521, 755, 1092, 1103, 1110, 1214
Hpy166II	GTNNAC	2 cut(s)	396, 455
Hpy188I	TCNGA	6 cut(s)	81, 159, 243, 409, 757, 1049
Hpy188III	TCNNGA	4 cut(s)	315, 383, 499, 860
Hpy8I	GTNNAC	2 cut(s)	396, 455
HpyAV	CCTTC	5 cut(s)	346, 728, 752, 989, 1125
HpyCH4III	ACNGT	3 cut(s)	875, 1067, 1202
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1259
HpyF3I	CTNAG	5 cut(s)	12, 156, 240, 681, 894
Hsp92II	CATG	3 cut(s)	406, 958, 1063
HspAI	GCGC	1 cut(s)	1028
Kzo9I	GATC	4 cut(s)	185, 243, 317, 1270
LmnI	GCTCC	1 cut(s)	613
Lsp1109I	GCAGC	3 cut(s)	189, 453, 1068
LweI	GCATC	5 cut(s)	24, 436, 570, 802, 1305
MaeIII	GTNAC	3 cut(s)	5, 905, 1098
MalI	GATC	4 cut(s)	187, 245, 319, 1272
MboI	GATC	4 cut(s)	185, 243, 317, 1270
MboII	GAAGA	6 cut(s)	42, 57, 816, 1237, 1291, 1297
MfeI	CAATTG	1 cut(s)	1158
MflI	RGATCY	1 cut(s)	243
MhlI	GDGCHC	1 cut(s)	371
MlyI	GAGTC	2 cut(s)	419, 1106
MmeI	TCCRAC	1 cut(s)	387
Mph1103I	ATGCAT	1 cut(s)	960
MroXI	GAANNNNTTC	1 cut(s)	64
MseI	TTAA	5 cut(s)	264, 672, 690, 939, 1002
MslI	CAYNNNNRTG	1 cut(s)	401
MspI	CCGG	2 cut(s)	248, 965
MspR9I	CCNGG	6 cut(s)	248, 297, 487, 966, 1122, 1134
MunI	CAATTG	1 cut(s)	1158
MvaI	CCWGG	4 cut(s)	297, 487, 1122, 1134
MvnI	CGCG	1 cut(s)	316
MwoI	GCNNNNNNNGC	1 cut(s)	1259
NciI	CCSGG	2 cut(s)	248, 966
NcoI	CCATGG	1 cut(s)	1059
NdeII	GATC	4 cut(s)	185, 243, 317, 1270
NlaIII	CATG	3 cut(s)	406, 958, 1063
NlaIV	GGNNCC	1 cut(s)	304
NmeAIII	GCCGAG	2 cut(s)	1108, 1279
NmuCI	GTSAC	3 cut(s)	5, 905, 1098
NruI	TCGCGA	1 cut(s)	316
NsiI	ATGCAT	1 cut(s)	960
NspI	RCATGY	1 cut(s)	958
PaeI	GCATGC	1 cut(s)	958
PaeR7I	CTCGAG	1 cut(s)	499
PdmI	GAANNNNTTC	1 cut(s)	64
PfeI	GAWTC	4 cut(s)	350, 386, 698, 856
PflMI	CCANNNNNTGG	1 cut(s)	274
PkrI	GCNGC	3 cut(s)	179, 468, 1083
PleI	GAGTC	2 cut(s)	418, 1105
PpsI	GAGTC	2 cut(s)	418, 1105
PpuMI	RGGWCCY	1 cut(s)	302
Psp5II	RGGWCCY	1 cut(s)	302
Psp6I	CCWGG	4 cut(s)	295, 485, 1120, 1132
PspFI	CCCAGC	1 cut(s)	1148
PspGI	CCWGG	4 cut(s)	295, 485, 1120, 1132
PspN4I	GGNNCC	1 cut(s)	304
PspPI	GGNCC	3 cut(s)	100, 302, 634
PspPPI	RGGWCCY	1 cut(s)	302
PsuI	RGATCY	1 cut(s)	243
RruI	TCGCGA	1 cut(s)	316
RseI	CAYNNNNRTG	1 cut(s)	401
SaqAI	TTAA	5 cut(s)	264, 672, 690, 939, 1002
SatI	GCNGC	3 cut(s)	178, 467, 1082
Sau3AI	GATC	4 cut(s)	185, 243, 317, 1270
Sau96I	GGNCC	3 cut(s)	100, 302, 634
SchI	GAGTC	2 cut(s)	419, 1106
ScrFI	CCNGG	6 cut(s)	248, 297, 487, 966, 1122, 1134
SduI	GDGCHC	1 cut(s)	371
SfaNI	GCATC	5 cut(s)	24, 436, 570, 802, 1305
Sfr274I	CTCGAG	1 cut(s)	499
SinI	GGWCC	3 cut(s)	100, 302, 634
SlaI	CTCGAG	1 cut(s)	499
SmiMI	CAYNNNNRTG	1 cut(s)	401
SmlI	CTYRAG	1 cut(s)	499
SmoI	CTYRAG	1 cut(s)	499
SphI	GCATGC	1 cut(s)	958
SsiI	CCGC	3 cut(s)	731, 1013, 1112
SspI	AATATT	1 cut(s)	976
StyD4I	CCNGG	6 cut(s)	246, 295, 485, 964, 1120, 1132
StyI	CCWWGG	1 cut(s)	1059
TaaI	ACNGT	3 cut(s)	875, 1067, 1202
TaqI	TCGA	2 cut(s)	500, 1039
TfiI	GAWTC	4 cut(s)	350, 386, 698, 856
Tru1I	TTAA	5 cut(s)	264, 672, 690, 939, 1002
Tru9I	TTAA	5 cut(s)	264, 672, 690, 939, 1002
TscAI	CASTG	5 cut(s)	16, 360, 919, 940, 1216
TseFI	GTSAC	3 cut(s)	5, 905, 1098
TseI	GCWGC	3 cut(s)	177, 466, 1081
Tsp45I	GTSAC	3 cut(s)	5, 905, 1098
TspDTI	ATGAA	7 cut(s)	57, 809, 936, 957, 1238, 1257, 1291
TspGWI	ACGGA	1 cut(s)	403
TspRI	CASTG	5 cut(s)	16, 360, 919, 940, 1216
Van91I	CCANNNNNTGG	1 cut(s)	274
VpaK11BI	GGWCC	3 cut(s)	100, 302, 634
XagI	CCTNNNNNAGG	1 cut(s)	1119
XapI	RAATTY	6 cut(s)	135, 286, 658, 796, 1168, 1190
XceI	RCATGY	1 cut(s)	958
XhoI	CTCGAG	1 cut(s)	499
XmnI	GAANNNNTTC	1 cut(s)	64
Zsp2I	ATGCAT	1 cut(s)	960

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.