Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0001797

Physical Location & Seq

Genomic Coordinates Reverse (-)

9365126 .. 9367270

Gene Structure 2145 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1054500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1503 bp

ATGGACCAACTGAACATTCCTCAGTTCAACCCTTCACAAACTCATTCATGTCAATTTTCACAAAGCTTTACTGAGGATATTAATGGTAGCAAAAGAATGGGGATACCACCCTCGTCCTCATCCTCCTCCCACTCGCATCATATCCTACCCATTTCGCCCTGTTCTGAGATCATGGTGTCCCAACCAACCGTCTTTTCTCTTGATTCATTGCACCCATTAACCCCATCCCAATATCGTAATTCTTCCTCGTCGGCATCCATGCAGAATGGTGATGTAGGTGCGTGTTCCTTGTTGTCTCCCTCACATTTAACCAAAGAAAACTATTTGAGGACCGGTGAGTGTTTGTCGCCTTGTAATGCTCATAGACGGTCGAATAGTGATATCCCATTTGGTTTTTCTAGCTTGATGCAACAATCTTTCCCGCCCATTGCTCCGATCAGAGGTTTGGGTGGTTTGGAGCTGTCAATGTCTGGTGCAGAAAATTTAGGGTTGGTTAAGCCAGCTCAGTTGGTTCAAAAGAAATCTAGCTTGCAGAGAGTCAGTGACAATAATGTTGTAGGAGAGCTAGTGGATGATTTGTTTTTGATATATATGAATTCGGATAATATTGATGTGTTGAATTCCTTGGGCACTGATGACAAGAATGAGCATGAGAATTGTGAAGAACTGGGTAGAGCAAGTGGGATTAAGACAGGTGACAATAGTGTGACTGAAGCAGAAAGCAATGTTAATGAAAGTGGAGGCAGTATTCGAAAACTGGGATTGAATATTTTTAACGATAAGAGGGAAGTGATAAGGCGGAGTGCATGGGGTGATATAGCACCAACCAGTCGACACCGCAGAAGTGTCTCGATGGATTGTTTTAAGGGTAAGTTGCAGTTTGGTGATGAGTTACATAGACTGCCACCTTCATTAGGAACTCCTCCAGGACAAGTTTCACCCAGCAATTCCACCGGTGCTCCCAGCAATTCCATCGATGCTAATTTAAATGCCTTTAGCTCGGAGTTTAGATATGTTGAGTTCAGTGAGGCTGAAATGAAGAATATAATGGCGAACGAAAAACTTTCTGGGGTTGCTTTGACTGATCCAAAGCGTGCAAAGAGAATTTTGGCAAATAGTCAATCAGCTGTTCGCTCCAAAGAGCGGAAGATGCGCTACATTTCAGAGCTGAAGCAGAAGGTTCAGACACTAGAGACAGAAGTAGCCATACTGAATGCACAACTTACATTGTTAAAGGGAGATTTTGATAGTATCAGAAATGAAACTAATGAGTTGAAGTTTCGCCTTCAAGCTATGGAACAACAGGAACAACTCCTAGATGGTATGTATCACGAGTGCATTAGGCTTATGGTGCAAAACAGTAAGGTATTCAGTTCTTCGGTAAGAAACATGCATGAATATATATATATATATCTCAGCACATTTACAGCAGGGTTTTTTTTCCTTCAACCTTTTGTTTTATTAATATTCAATTACATATTTAAAAAAGATATTGATGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

501

Amino Acids

55.5

Weight (kDa)

6.21

Isoelectric Point (pI)

58.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	361 - 412	6.4e-07	Basic region leucine zipper
bZIP_1	PF00170	364 - 421	9.3e-07	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21230 AT2G21230 AT2G21230 AT2G21230 AT4G38900 AT4G38900 AT4G38900
fragaria_vesca	FvH4_2g10670 FvH4_2g10670 FvH4_2g10670 FvH4_2g10670 FvH4_2g10670 FvH4_2g38831 FvH4_2g38831
malus_domestica	MD05G1054500.v1.1 MD08G1016000.v1.1 MD08G1016200.v1.1 MD15G1015000.v1.1 MD15G1015100.v1.1
prunus_persica	Prupe.1G369300_v2.0.a1 Prupe.1G369300_v2.0.a1
pyrus_communis	pycom08g01400 pycom08g01410 pycom15g01300
rosa_chinensis	RchiOBHm_Chr6g0268361 RchiOBHm_Chr6g0302431
rosa_laevigata	RLG00000011172 RLG00000013914
rosa_multiflora	Rmu_co8451713.1_g000001 Rmu_sc0011714.1_g000001
rosa_roxburghii	Rroxscaffold_7G00165790 Rroxscaffold_7G00199840
rosa_rugosa	Rorug06G0040800 Rorug06G0314000 Rorug06G0314100 Rorug06G0314200 Rorug06G0314200
rosa_samantha	Rh6AG160900 Rh6AG427100 Rh6BG165300 Rh6BG475600 Rh6CG153200 Rh6CG439300 Rh6DG151000 Rh6DG426300
rosa_wichuraiana	Rw6G013910 Rw6G036950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	1144
AccI	GTMKAC	1 cut(s)	832
AciI	CCGC	4 cut(s)	422, 799, 838, 1144
AclWI	GGATC	1 cut(s)	1079
AcsI	RAATTY	4 cut(s)	481, 595, 619, 1104
AcuI	CTGAAG	2 cut(s)	732, 1190
AfiI	CCNNNNNNNGG	3 cut(s)	440, 914, 1143
AgeI	ACCGGT	2 cut(s)	332, 953
AgsI	TTSAA	8 cut(s)	28, 515, 619, 766, 1276, 1289, 1448, 1471
AjnI	CCWGG	1 cut(s)	925
AjuI	GAANNNNNNNTTGG	3 cut(s)	32, 178, 210
Alw21I	GWGCWC	1 cut(s)	961
Alw26I	GTCTC	3 cut(s)	300, 853, 1187
AlwI	GGATC	1 cut(s)	1079
ApoI	RAATTY	4 cut(s)	481, 595, 619, 1104
AseI	ATTAAT	2 cut(s)	81, 1463
AsiGI	ACCGGT	2 cut(s)	332, 953
AspLEI	GCGC	1 cut(s)	1155
AspS9I	GGNCC	2 cut(s)	4, 330
AsuHPI	GGTGA	6 cut(s)	281, 347, 707, 824, 896, 930
AsuII	TTCGAA	1 cut(s)	751
AvaII	GGWCC	2 cut(s)	4, 330
BaeGI	GKGCMC	1 cut(s)	632
BarI	GAAGNNNNNNTAC	4 cut(s)	1139, 1171, 1191, 1223
BauI	CACGAG	1 cut(s)	1331
Bbv12I	GWGCWC	1 cut(s)	961
BccI	CCATC	5 cut(s)	232, 847, 980, 1313, 1490
BcgI	CGANNNNNNTGC	2 cut(s)	955, 989
BciT130I	CCWGG	1 cut(s)	927
BciVI	GTATCC	1 cut(s)	96
BcoDI	GTCTC	3 cut(s)	300, 853, 1187
BfaI	CTAG	5 cut(s)	399, 525, 566, 1190, 1316
BfuI	GTATCC	1 cut(s)	96
Bme1390I	CCNGG	1 cut(s)	927
Bme18I	GGWCC	2 cut(s)	4, 330
BmgT120I	GGNCC	2 cut(s)	4, 330
BmrFI	CCNGG	1 cut(s)	927
BmrI	ACTGGG	2 cut(s)	677, 767
BmsI	GCATC	5 cut(s)	145, 263, 396, 967, 1140
BmuI	ACTGGG	2 cut(s)	677, 767
BpmI	CTGGAG	1 cut(s)	909
Bpu14I	TTCGAA	1 cut(s)	751
Bsa29I	ATCGAT	1 cut(s)	975
BsaJI	CCNNGG	1 cut(s)	624
BsaWI	WCCGGW	2 cut(s)	332, 953
BsaXI	ACNNNNNCTCC	4 cut(s)	552, 582, 943, 973
Bsc4I	CCNNNNNNNGG	3 cut(s)	440, 914, 1143
Bse118I	RCCGGY	2 cut(s)	332, 953
Bse1I	ACTGG	3 cut(s)	672, 762, 828
Bse3DI	GCAATG	3 cut(s)	206, 426, 730
BseBI	CCWGG	1 cut(s)	927
BseCI	ATCGAT	1 cut(s)	975
BseDI	CCNNGG	1 cut(s)	624
BseGI	GGATG	4 cut(s)	119, 224, 254, 577
BseLI	CCNNNNNNNGG	3 cut(s)	440, 914, 1143
BseMI	GCAATG	3 cut(s)	206, 426, 730
BseMII	CTCAG	5 cut(s)	35, 63, 156, 518, 1429
BseNI	ACTGG	3 cut(s)	672, 762, 828
BseRI	GAGGAG	2 cut(s)	115, 912
BseSI	GKGCMC	1 cut(s)	632
BseYI	CCCAGC	2 cut(s)	941, 962
BsgI	GTGCAG	1 cut(s)	495
Bsh1285I	CGRYCG	1 cut(s)	371
BshTI	ACCGGT	2 cut(s)	332, 953
BshVI	ATCGAT	1 cut(s)	975
BsiEI	CGRYCG	1 cut(s)	371
BsiHKAI	GWGCWC	1 cut(s)	961
BsiSI	CCGG	2 cut(s)	333, 954
BslFI	GGGAC	1 cut(s)	163
BslI	CCNNNNNNNGG	3 cut(s)	440, 914, 1143
BsmAI	GTCTC	3 cut(s)	300, 853, 1187
BsmFI	GGGAC	1 cut(s)	163
BsmI	GAATGC	1 cut(s)	1219
Bsp119I	TTCGAA	1 cut(s)	751
Bsp1286I	GDGCHC	2 cut(s)	632, 961
Bsp143I	GATC	3 cut(s)	168, 435, 1084
BspACI	CCGC	4 cut(s)	422, 799, 838, 1144
BspCNI	CTCAG	5 cut(s)	34, 64, 157, 517, 1428
BspDI	ATCGAT	1 cut(s)	975
BspPI	GGATC	1 cut(s)	1079
BspT104I	TTCGAA	1 cut(s)	751
BsrBI	CCGCTC	1 cut(s)	1144
BsrDI	GCAATG	3 cut(s)	206, 426, 730
BsrFI	RCCGGY	2 cut(s)	332, 953
BsrI	ACTGG	3 cut(s)	672, 762, 828
BssAI	RCCGGY	2 cut(s)	332, 953
BssECI	CCNNGG	1 cut(s)	624
BssMI	GATC	3 cut(s)	168, 435, 1084
BssSI	CACGAG	1 cut(s)	1331
BssT1I	CCWWGG	1 cut(s)	624
Bst2BI	CACGAG	1 cut(s)	1331
Bst2UI	CCWGG	1 cut(s)	927
Bst4CI	ACNGT	3 cut(s)	190, 369, 1361
BstBI	TTCGAA	1 cut(s)	751
BstC8I	GCNNGC	3 cut(s)	501, 530, 1095
BstDEI	CTNAG	5 cut(s)	21, 72, 165, 504, 1415
BstENI	CCTNNNNNAGG	1 cut(s)	912
BstF5I	GGATG	4 cut(s)	119, 224, 254, 577
BstHHI	GCGC	1 cut(s)	1155
BstKTI	GATC	3 cut(s)	171, 438, 1087
BstMAI	GTCTC	3 cut(s)	300, 853, 1187
BstMBI	GATC	3 cut(s)	168, 435, 1084
BstMCI	CGRYCG	1 cut(s)	371
BstMWI	GCNNNNNNNGC	2 cut(s)	1150, 1351
BstNI	CCWGG	1 cut(s)	927
BstNSI	RCATGY	1 cut(s)	1393
BstSCI	CCNGG	1 cut(s)	925
BstSLI	GKGCMC	1 cut(s)	632
Bsu15I	ATCGAT	1 cut(s)	975
BsuI	GTATCC	1 cut(s)	96
BsuTUI	ATCGAT	1 cut(s)	975
BtsCI	GGATG	4 cut(s)	119, 224, 254, 577
BtsIMutI	CAGTG	3 cut(s)	547, 630, 1030
Cac8I	GCNNGC	3 cut(s)	501, 530, 1095
CfoI	GCGC	1 cut(s)	1155
Cfr10I	RCCGGY	2 cut(s)	332, 953
Cfr13I	GGNCC	2 cut(s)	4, 330
ClaI	ATCGAT	1 cut(s)	975
CspAI	ACCGGT	2 cut(s)	332, 953
CviAII	CATG	7 cut(s)	48, 172, 259, 650, 807, 1390, 1394
DdeI	CTNAG	5 cut(s)	21, 72, 165, 504, 1415
DpnI	GATC	3 cut(s)	170, 437, 1086
DpnII	GATC	3 cut(s)	168, 435, 1084
DraI	TTTAAA	2 cut(s)	987, 1483
EciI	GGCGGA	1 cut(s)	814
Eco130I	CCWWGG	1 cut(s)	624
Eco32I	GATATC	1 cut(s)	382
Eco47I	GGWCC	2 cut(s)	4, 330
Eco57I	CTGAAG	2 cut(s)	732, 1190
EcoNI	CCTNNNNNAGG	1 cut(s)	912
EcoRI	GAATTC	2 cut(s)	595, 619
EcoRII	CCWGG	1 cut(s)	925
EcoRV	GATATC	1 cut(s)	382
EcoT14I	CCWWGG	1 cut(s)	624
EcoT22I	ATGCAT	1 cut(s)	1395
ErhI	CCWWGG	1 cut(s)	624
FaeI	CATG	7 cut(s)	51, 175, 262, 653, 810, 1393, 1397
FaqI	GGGAC	1 cut(s)	163
FatI	CATG	7 cut(s)	47, 171, 258, 649, 806, 1389, 1393
FauI	CCCGC	1 cut(s)	429
FblI	GTMKAC	1 cut(s)	832
FokI	GGATG	4 cut(s)	106, 211, 241, 584
FspBI	CTAG	5 cut(s)	399, 525, 566, 1190, 1316
GlaI	GCGC	1 cut(s)	1154
GsaI	CCCAGC	2 cut(s)	945, 966
GsuI	CTGGAG	1 cut(s)	909
HapII	CCGG	2 cut(s)	333, 954
HhaI	GCGC	1 cut(s)	1155
Hin1II	CATG	7 cut(s)	51, 175, 262, 653, 810, 1393, 1397
Hin6I	GCGC	1 cut(s)	1153
HinP1I	GCGC	1 cut(s)	1153
HincII	GTYRAC	1 cut(s)	833
HindII	GTYRAC	1 cut(s)	833
HindIII	AAGCTT	1 cut(s)	64
HinfI	GANTC	2 cut(s)	203, 537
HpaII	CCGG	2 cut(s)	333, 954
HphI	GGTGA	6 cut(s)	281, 347, 707, 824, 896, 930
Hpy166II	GTNNAC	1 cut(s)	833
Hpy188I	TCNGA	8 cut(s)	166, 435, 440, 601, 1003, 1165, 1185, 1256
Hpy188III	TCNNGA	3 cut(s)	200, 850, 1331
Hpy8I	GTNNAC	1 cut(s)	833
Hpy99I	CGWCG	1 cut(s)	253
HpyAV	CCTTC	5 cut(s)	42, 918, 1171, 1295, 1454
HpyCH4III	ACNGT	3 cut(s)	190, 369, 1361
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1150, 1351
HpyF3I	CTNAG	5 cut(s)	21, 72, 165, 504, 1415
Hsp92II	CATG	7 cut(s)	51, 175, 262, 653, 810, 1393, 1397
HspAI	GCGC	1 cut(s)	1153
Kzo9I	GATC	3 cut(s)	168, 435, 1084
LmnI	GCTCC	4 cut(s)	436, 457, 964, 1139
LweI	GCATC	5 cut(s)	145, 263, 396, 967, 1140
MaeI	CTAG	5 cut(s)	399, 525, 566, 1190, 1316
MaeIII	GTNAC	4 cut(s)	542, 695, 706, 891
MalI	GATC	3 cut(s)	170, 437, 1086
MbiI	CCGCTC	1 cut(s)	1144
MboI	GATC	3 cut(s)	168, 435, 1084
MboII	GAAGA	5 cut(s)	234, 674, 1051, 1159, 1368
MhlI	GDGCHC	2 cut(s)	632, 961
MlyI	GAGTC	1 cut(s)	546
Mph1103I	ATGCAT	1 cut(s)	1395
MspA1I	CMGCKG	1 cut(s)	1127
MspI	CCGG	2 cut(s)	333, 954
MspR9I	CCNGG	1 cut(s)	927
Mva1269I	GAATGC	1 cut(s)	1219
MvaI	CCWGG	1 cut(s)	927
MwoI	GCNNNNNNNGC	2 cut(s)	1150, 1351
NdeII	GATC	3 cut(s)	168, 435, 1084
NlaIII	CATG	7 cut(s)	51, 175, 262, 653, 810, 1393, 1397
NmuCI	GTSAC	3 cut(s)	542, 695, 706
NsiI	ATGCAT	1 cut(s)	1395
NspI	RCATGY	1 cut(s)	1393
NspV	TTCGAA	1 cut(s)	751
PctI	GAATGC	1 cut(s)	1219
PfeI	GAWTC	1 cut(s)	203
PfoI	TCCNGGA	1 cut(s)	925
PinAI	ACCGGT	2 cut(s)	332, 953
PleI	GAGTC	1 cut(s)	545
PpsI	GAGTC	1 cut(s)	545
PshBI	ATTAAT	2 cut(s)	81, 1463
Psp6I	CCWGG	1 cut(s)	925
PspFI	CCCAGC	2 cut(s)	941, 962
PspGI	CCWGG	1 cut(s)	925
PspPI	GGNCC	2 cut(s)	4, 330
PvuII	CAGCTG	1 cut(s)	1127
SalI	GTCGAC	1 cut(s)	831
Sau3AI	GATC	3 cut(s)	168, 435, 1084
Sau96I	GGNCC	2 cut(s)	4, 330
SchI	GAGTC	1 cut(s)	546
ScrFI	CCNGG	1 cut(s)	927
SduI	GDGCHC	2 cut(s)	632, 961
SfaNI	GCATC	5 cut(s)	145, 263, 396, 967, 1140
SfuI	TTCGAA	1 cut(s)	751
SgrAI	CRCCGGYG	1 cut(s)	953
SinI	GGWCC	2 cut(s)	4, 330
SmiI	ATTTAAAT	1 cut(s)	987
SsiI	CCGC	4 cut(s)	422, 799, 838, 1144
SspI	AATATT	3 cut(s)	607, 769, 1467
SspMI	CTAG	5 cut(s)	399, 525, 566, 1190, 1316
StyD4I	CCNGG	1 cut(s)	925
StyI	CCWWGG	1 cut(s)	624
SwaI	ATTTAAAT	1 cut(s)	987
TaaI	ACNGT	3 cut(s)	190, 369, 1361
TaqI	TCGA	5 cut(s)	371, 751, 832, 851, 975
TfiI	GAWTC	1 cut(s)	203
TscAI	CASTG	3 cut(s)	547, 637, 1030
TseFI	GTSAC	3 cut(s)	542, 695, 706
Tsp45I	GTSAC	3 cut(s)	542, 695, 706
TspDTI	ATGAA	8 cut(s)	36, 195, 608, 747, 900, 1052, 1275, 1410
TspRI	CASTG	3 cut(s)	547, 637, 1030
VpaK11BI	GGWCC	2 cut(s)	4, 330
VspI	ATTAAT	2 cut(s)	81, 1463
XagI	CCTNNNNNAGG	1 cut(s)	912
XapI	RAATTY	4 cut(s)	481, 595, 619, 1104
XceI	RCATGY	1 cut(s)	1393
XmiI	GTMKAC	1 cut(s)	832
XspI	CTAG	5 cut(s)	399, 525, 566, 1190, 1316
Zsp2I	ATGCAT	1 cut(s)	1395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.